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At least 181 records · Page 10

Tools for Assessing Performance Project: FY2021 Quarter 4 Report

The rotatable building located at Texas Tech’s Reese Technology Center is approximately 14 m wide (width being defined as more normal to the wind than parallel), 9 m long (aligned more with the wind than perpendicular), and 4 m tall. By placing 29 sonic anemometers downwind of the building, see Fig. 1, this facility provided a chance to collect data concerning both the wake velocity deficit distribution in the downstream and crosssteam directions (relative to the mean wind) behind an isolated building. A preliminary comparison between this data and the recently- developed fast-running diffusive wake model, which was developed based on wind tunnel and LES (performed with JOULES) simulations, for the purpose of either validating this model of understanding potential persistent differences between the idealized wind tunnel or LES conditions and those of full-scale real world phenomena. For this preliminary exploration, we utilized the diffusive wake model implemented in the QUIC model.

42 ENGINEERING↗

Tools for Assessing Performance: FY23-Q1 Report [Slides]

LANL was tasked with working with NREL to implement QUIC within the TAP API by the end of Q1, FY2023. If QUICURB cannot be implemented in a way that it can be run outside of the QUIC platform, there will be no further R&D funding for QUIC development. QUIC includes a graphical user interface that imports and preprocesses the various input data streams (3D building databases, ambient wind, vegetation, etc.) and writes them in a format that the QUICURB Fortran executable requires. In order to interface with the TAP API, a Python script was developed that would replace the functionality previously only available within QUICGUI. LANL worked with NREL to test the Python script to ensure that it was operation and fulfilled the requirements.

58 GEOSCIENCES↗

Tools for Assessing Performance (TAP) Project: FY2023 Quarter 2 Report

LANL personnel presented TAP-sponsored work at the 103 rd Annual Meeting of the American Meteorological Society, which was held in Denver, CO in January 2023. There were four different presentations related to TAP-sponsored work that were given by LANL staff and studentsat this meeting: (1) Gloeckler, T., M. Nelson, H. Shah, M. Deshler, L. Wedell, R. Linn, N. Duboc, S. Pol, P. Bieringer, A. Annunzio, B. Martin, and H. Tinnesand, 2023. Testing Validity and Limitations of a Low-Order Diffusive Wake Model. 15 th Symposium on the Urban Environment, January 8-12, 2023, Denver, CO, U.S.A. (2) Nelson, M., H. Shah, T. Gloeckler, M. Deshler, L. Wedell, A. Ortega, R. Linn, N. Duboc, P. Conry, S. Pol, and H. Tinnesand, 2023. The Isolated Building Wake Experiment. Paper 1A.1. 24 th Symposium on Boundary Layers and Turbulence, January 8-12, 2023. Denver, CO, U.S.A. (3) Shah, H., M. Nelson, S. Pol, R. Linn, N. Duboc, and H. Tinnesand, 2023. Detailed Measurement of a Building Wake Under Real-World Atmospheric Conditions. Poster 102. 24 th Symposium on Boundary Layers and Turbulence, January 8-12, 2023, Denver, CO, U.S.A. (4) Wedell, L., M. Nelson, H. Shah, T. Gloeckler, M. Deshler, R. Linn, S. Pol, H. Tinnesand, 2023. The Isolated Building Wake Experiment: Using a Rotating Building to Mulitply the Number of Wake Measurement Locations without Moving the Instruments. Paper 1A.4A. 24 th Symposium on Boundary Layers and Turbulence, January 8-12, 2023, Denver, CO, U.S.A.

54 ENVIRONMENTAL SCIENCES↗

TOKIO on ClusterStor: Connecting Standard Tools to Enable Holistic I/O Performance Analysis

At present, I/O performance analysis requires different tools to characterize individual components of the I/O subsystem, and institutional I/O expertise is relied upon to translate these disparate data into an integrated view of application performance. This process is labor-intensive and not sustainable as the storage hierarchy deepens and system complexity increases. To address this growing disparity, we have developed the Total Knowledge of I/O (TOKIO) framework to combine the insights from existing component-level monitoring tools and provide a holistic view of performance across the entire I/O stack. A reference implementation of TOKIO, pytokio, is presented here. Using monitoring tools included with Cray XC and ClusterStor systems alongside commonly deployed community-supported tools, we demonstrate how pytokio provides a lightweight foundation for holistic I/O performance analyses on two Cray XC systems deployed at different HPC centers. We present results from integrated analyses that allow users to quantify the degree of I/O contention that affected their jobs and probabilistically identify unhealthy storage devices that impacted their performance.We also apply pytokio to inspect the utilization of NERSC’s DataWarp burst buffer and demonstrate how pytokio can be used to identify users and applications who may stand to benefit most from migrating their workloads from Lustre to the burst buffer.

Lockwood, Glenn K.↗

System Administration Tools

High Performance Computing clusters and supercomputers are expensive and complex systems to manage. The software tools to manage these systems are also aging to the point where they are no longer actively developed and their methodology is antiquated. There has been a surge of new methodologies and software tools developed by the cloud providers to maximize availability of services and scalability of server deployment. The authors would like to utilize these new software tools to distribute our proof of concept, named Kraken, that will be responsible for booting and managing LANL's HPC systems in the future

Peltz, Paul↗

Power- and Cooling-Aware Parallel Performance Diagnosis

Increasing concern about the power consumption of data centers and computer laboratories, which in some cases matches or exceeds the resources required to power a small city, drive a need for a new, integrated approach to parallel performance diagnosis that integrates traditional application oriented performance data with measurements of the physical runtime environment. We have developed infrastructure for combined evaluation of system, application, and machine room performance in the high end environment. We motivate our approach, with a case study of the performance, power and cooling impact of the choice of physical location for a scientific application within the machine room. We present a new intensity metric for use in automated performance diagnosis tools, and discuss the challenges encountered.

Environmental Molecular Sciences Laboratory↗

Performance Analysis of and Tool Support for Transactional Memory on BG/Q

Martin Schindewolf worked during his internship at the Lawrence Livermore National Laboratory (LLNL) under the guidance of Martin Schulz at the Computer Science Group of the Center for Applied Scientific Computing. We studied the performance of the TM subsystem of BG/Q as well as researched the possibilities for tool support for TM. To study the performance, we run CLOMP-TM. CLOMP-TM is a benchmark designed for the purpose to quantify the overhead of OpenMP and compare different synchronization primitives. To advance CLOMP-TM, we added Message Passing Interface (MPI) routines for a hybrid parallelization. This enables to run multiple MPI tasks, each running OpenMP, on one node. With these enhancements, a beneficial MPI task to OpenMP thread ratio is determined. Further, the synchronization primitives are ranked as a function of the application characteristics. To demonstrate the usefulness of these results, we investigate a real Monte Carlo simulation called Monte Carlo Benchmark (MCB). Applying the lessons learned yields the best task to thread ratio. Further, we were able to tune the synchronization by transactifying the MCB. Further, we develop tools that capture the performance of the TM run time system and present it to the application's developer. The performance of the TM run time system relies on the built-in statistics. These tools use the Blue Gene Performance Monitoring (BGPM) interface to correlate the statistics from the TM run time system with performance counter values. This combination provides detailed insights in the run time behavior of the application and enables to track down the cause of degraded performance. Further, one tool has been implemented that separates the performance counters in three categories: Successful Speculation, Unsuccessful Speculation and No Speculation . All of the tools are crafted around IBM's xlc compiler for C and C++ and have been run and tested on a Q32 early access system.

97 MATHEMATICS AND COMPUTING↗

Automated Cache Performance Analysis And Optimization

While there is no lack of performance counter tools for coarse-grained measurement of cache activity, there is a critical lack of tools for relating data layout to cache behavior to application performance. Generally, any nontrivial optimizations are either not done at all, or are done ”by hand” requiring significant time and expertise. To the best of our knowledge no tool available to users measures the latency of memory reference instructions for particular addresses and makes this information available to users in an easy-to-use and intuitive way. In this project, we worked to enable the Open|SpeedShop performance analysis tool to gather memory reference latency information for specific instructions and memory addresses, and to gather and display this information in an easy-to-use and intuitive way to aid performance analysts in identifying problematic data structures in their codes. This tool was primarily designed for use in the supercomputer domain as well as grid, cluster, cloud-based parallel e-commerce, and engineering systems and middleware. Ultimately, we envision a tool to automate optimization of application cache layout and utilization in the Open|SpeedShop performance analysis tool. To commercialize this software, we worked to develop core capabilities for gathering enhanced memory usage performance data from applications and create and apply novel methods for automatic data structure layout optimizations, tailoring the overall approach to support existing supercomputer and cluster programming models and constraints. In this Phase I project, we focused on infrastructure necessary to gather performance data and present it in an intuitive way to users. With the advent of enhanced Precise Event-Based Sampling (PEBS) counters on recent Intel processor architectures and equivalent technology on AMD processors, we are now in a position to access memory reference information for particular addresses. Prior to the introduction of PEBS counters, cache behavior could only be measured reliably in the aggregate across tens or hundreds of thousands of instructions. With the newest iteration of PEBS technology, cache events can be tied to a tuple of instruction pointer, target address (for both loads and stores), memory hierarchy, and observed latency. With this information we can now begin asking questions regarding the efficiency of not only regions of code, but how these regions interact with particular data structures and how these interactions evolve over time. In the short term, this information will be vital for performance analysts understanding and optimizing the behavior of their codes for the memory hierarchy. In the future, we can begin to ask how data layouts might be changed to improve performance and, for a particular application, what the theoretical optimal performance might be. The overall benefit to be produced by this effort was a commercial quality easy-to- use and scalable performance tool that will allow both beginner and experienced parallel programmers to automatically tune their applications for optimal cache usage. Effective use of such a tool can literally save weeks of performance tuning effort. Easy to use. With the proposed innovations, finding and fixing memory performance issues would be more automated and hide most to all of the performance engineer expertise ”under the hood” of the Open|SpeedShop performance tool. One of the biggest public benefits from the proposed innovations is that it makes performance analysis more usable to a larger group of application developers. Intuitive reporting of results. The Open|SpeedShop performance analysis tool has a rich set of intuitive, yet detailed reports for presenting performance results to application developers. Our goal was to leverage this existing technology to present the results from our memory performance addition to Open|SpeedShop. Suitable for experts as well as novices. Application performance is getting more difficult to measure as the hardware platforms they run on become more complicated. This makes life difficult for the application developer, in that they need to know more about the hardware platform, including the memory system hierarchy, in order to understand the performance of their application. Some application developers are comfortable in that sceario, while others want to do their scientific research and not have to understand all the nuances in the hardware platform they are running their application on. Our proposed innovations were aimed to support both experts and novice performance analysts. Useful in many markets. The enhancement to Open|SpeedShop would appeal to a broader market space, as it will be useful in scientific, commercial, and cloud computing environments. Our goal was to use technology developed initially at the and Lawrence Livermore National Laboratory combined with the development and commercial software experience of the Argo Navis Technologies, LLC (ANT) to form a powerful combination to delivery these objectives.

97 MATHEMATICS AND COMPUTING↗

Plasma Surface Interactions: Bridging from the Surface to the Micron Frontier through Leadership Class Computing (Final Technical Progress Report)

The performance demands on plasma-facing components (PFCs) in future fusion power plants are beyond the capability of current materials. In defining the plasma-surface interaction (PSI), it is evident that three coupled spatial regions influence PFC materials evolution and performance. These regions consist of (1) the edge and scrape-off layer region of the plasma, (2) the near-surface material response to extreme thermal and particle fluxes under the influence of, and feedback to, the plasma sheath, and (3) the structural material’s response to an intense, 14 MeV peaked neutron spectrum, which produces very high concentrations of transmuted elements through (n,p) and (n,α) reactions and structural material property degradation. The objective of this project is to develop and deploy validated, high-performance simulation tools capable of predicting the performance of tungsten-based plasma-facing components (PFCs) in a burning fusion plasma environment, which includes modeling surface morphology evolution in either erosion or re-deposition regimes, and the recycling of hydrogen species. This requires the development of a leadership-scale computational code to predict PFC behavior that is well integrated to a suite of multiscale modeling techniques to bridge the scales needed to address complex physical and computational issues at the plasma surface interface and the transition region below the surface where neutron damage processes in the bulk dominate material behavior. Successful completion of this project will provide PFC simulation tools to evaluate steady-state performance of tungsten-based PFC and divertor components in burning plasma environments. This will enable the identification of critical experiments to confirm whether practical PFC solutions exist for magnetic fusion energy beyond ITER. More specifically, the research activities within this project focus on two broadly defined research thrusts: 1) Developing a new simulation code, Xolotl-PSI to predict PFC operating lifetime and performance, that is specifically designed to take advantage of leadership class computing facilities; and 2) Integrating and applying discrete particle-based, as well as continuum-based, multiscale modeling techniques to provide scientific discovery of the mechanisms controlling PFC and bulk materials evolution under fusion plasma and 14-MeV neutron exposure; in this thrust, the challenge of scale-bridging between atomistic/microstructural modeling and the continuum-scale of PFC device performance is achieved through multiscale modeling techniques. Throughout the grant period, research at UMass Amherst focused on the atomic-scale analysis of the dynamics and kinetics (transport and reactions) of small mobile helium clusters near surfaces and grain boundaries in plasma-exposed tungsten, as well as the proper parameterization and incorporation of these processes into our SciDAC team’s continuum-level cluster dynamics code (Xolotl). Our work also included characterization of large-scale molecular-dynamics (MD) simulation results of helium implantation into tungsten based on the findings of our analysis and comparisons of Xolotl simulation predictions with the large-scale MD simulation results for Xolotl validation purposes; emphasis was placed on the impact of helium cluster dynamics/kinetics on tungsten surface morphology, near-surface tungsten structure, and helium retention. Furthermore, our work included initiation of a research program on evaluating the impact of structural defects in tungsten due to plasma exposure (such as helium nanobubbles) on tungsten’s thermophysical properties, focusing on lattice thermal conductivity. Our studies contributed to a fundamental understanding of the effects of plasma-surface interactions on the dynamical response of plasma-facing materials in nuclear fusion devices and the development of predictive hierarchical multiscale computational tools for the quantitative description of the material’s dynamical response to plasma exposure.

36 MATERIALS SCIENCE↗

Tailored Fiber Placement for Complex Preforms

Tailored Fiber Placement (TFP) offers a novel approach to optimize fiber architecture for the fabrication of complex, structural parts not traditionally suitable for advanced composites. This technology not only offers new routes for weight reduction via metal substitution, it also offers cost reduction through minimization of material scrap and reduced labor. This reduction in component weight leads to increased fuel efficiency, and reduced production energy consumption, thereby, helping to achieve the stated IACMI technical goals. This technology leverages centuries of manufacturing development in support of the textile and embroidery industry. One major drawback to this technology is the lack of commercial or non- proprietary structural performance data and robust analytical tools used to optimize fiber architecture and predict performance. This project was structured to utilize common sub-element features to validate analytical performance tools, generate performance data, and gather cost and performance data on components of interest. This project was designed to give industry sponsors the confidence and ability to take full advantage of TFP to fabricate primary, highly loaded structure and integrate features such as metallic fasteners. The project focused principally on the use of high strength carbon fiber, such as T700, and the use of aerospace epoxy resin matrix to primarily support development of new composite applications in vehicle, aerospace, and industrial markets. This project applied previously developed analytical tools to predict the performance of TFP produced parts. This work focused on developing the pipeline to characterize material in order to accurately predict component performance when modifying the TFP print paths and stitch density. This focused on experimental characterization via standardized ASTM testing, alongside experimental testing of more representative service components by testing curved beam strength, beam shear performance, a large scale TFP lug, and ultimately designing a fully TFP clip bracket that reduced weight and cost compared to a traditional metallic component. The new knowledge gained from this program included: 1) development and demonstration of novel analytical tools applied to analysis of TFP preforms; 2) development and demonstration of a building block approach using coupons and sub-elements to optimize the design of a more complex component; 3) demonstration that optimized fiber orientation using TFP can exceed performance of conventional textile composite materials and can open new applications currently limited to metallic components; 4) Demonstration of performance and cost benefits of the TFP process as compared to metallic and conventional textile composites. Recommendations for follow-on work include development of design allowables to assess the impact of high temperature/moisture exposure or saturation during loading, tracking the impact of stitching needle wear on the performance of parts and ability to stitch thicker preforms, using TFP preforms as local reinforcement at areas of bearing or complex loading, and topology optimization of components by tow steering. The expertise developed during the course of this project can be leveraged to provide commercial engineering design and fabrication services using TFP. UDRI is in the process of formalizing their partnership with Spintech, who will serve as the commercialization partner for this technology and provide molding services and deliver finished components to the end user. UDRI will continue to produce the preforms until the economics allow Spintech to procure its own TFP equipment or lease UDRI equipment, at which point UDRI will step away from manufacture and serve as the engineering and design lead on product development.

36 MATERIALS SCIENCE↗

Performance analysis and data reduction for exascale scientific workflows

Chimbuko is the first in situ, scalable, workflow-level performance analysis tool for trace-level analysis and visualization of application performance. This tool was developed by the Co-design Center for Online Data Analysis and Reduction and funded by the U.S. Department of Energy’s Exascale Computing Project. We provide a detailed description of Chimbuko’s architecture and illustrate our online and offline visualization with multiple use cases. We also present results for the deployment and scalability of the tool as applied to a high-energy physics workflow running at large scale on the Frontier supercomputer.

97 MATHEMATICS AND COMPUTING↗