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At least 181 records · Page 10

Ringing Artifact Reduction Method for Ultrasound Reconstruction Using Multi-Agent Consensus Equilibrium

Non-destructive characterization of multi-layered structures that can be accessed from only a single side is important for applications such as well-bore integrity inspection. Existing methods related to Synthetic Aperture Focusing Technique (SAFT) rapidly produce acceptable results but with significant artifacts. Recently, ultrasound model-based iterative reconstruction (UMBIR) approaches have shown significant improvements over SAFT. However, even these methods produce ringing artifacts due to the high fractional-bandwidth of the excitation signal.In this paper, we propose a ringing artifact reduction method for ultrasound image reconstruction that uses a multi-agent consensus equilibrium (RARE-MACE) framework. Our approach integrates a physics-based forward model that accounts for the propagation of a collimated ultrasonic beam in multi-layered media, a spatially varying image prior, and a denoiser designed to suppress the ringing artifacts that are characteristic of reconstructions from high-fractional bandwidth ultrasound sensor data. We test our method on simulated and experimental measurements and show substantial improvements in image quality compared to SAFT and UMBIR.

Alanazi, Abdulrahman M↗

CYP76BK1 orthologs catalyze furan and lactone ring formation in clerodane diterpenoids across the mint family

The Lamiaceae (mint family) is the largest known source of furanoclerodanes, a subset of clerodane diterpenoids with broad bioactivities including insect antifeedant properties. The Ajugoideae subfamily, in particular, accumulates significant numbers of structurally related furanoclerodanes. The biosynthetic capacity for formation of these diterpenoids is retained across most Lamiaceae subfamilies, including the early-diverging Callicarpoideae which forms a sister clade to the rest of Lamiaceae. VacCYP76BK1, a cytochrome P450 monooxygenase from Vitex agnus-castus, was previously found to catalyze the formation of the proposed precursor to furan and lactone-containing labdane diterpenoids. Through transcriptome-guided pathway exploration, we identified orthologs of VacCYP76BK1 in Ajuga reptans and Callicarpa americana. Functional characterization demonstrated that both could catalyze the oxidative cyclization of clerodane backbones to yield a furan ring. Subsequent investigation revealed a total of 10 CYP76BK1 orthologs across six Lamiaceae subfamilies. Through analysis of available chromosome-scale genomes, we identified four CYP76BK1 members as syntelogs within a conserved syntenic block across divergent subfamilies. This suggests an evolutionary lineage that predates the speciation of the Lamiaceae. Functional characterization of the CYP76BK1 orthologs affirmed conservation of function, as all catalyzed furan ring formation. Additionally, some orthologs yielded two novel lactone ring moieties. The presence of the CYP76BK1 orthologs across Lamiaceae subfamilies closely overlaps with the distribution of reported furanoclerodanes. Together, the activities and distribution of the CYP76BK1 orthologs identified here support their central role in furanoclerodane biosynthesis within the Lamiaceae family. Our findings lay the groundwork for biotechnological applications to harness the economic potential of this promising class of compounds.

59 BASIC BIOLOGICAL SCIENCES↗

Pseudo-atomic orbital behavior in graphene nanoribbons with four-membered rings

The incorporation of nonhexagonal rings into graphene nanoribbons (GNRs) is an effective strategy for engineering localized electronic states, bandgaps, and magnetic properties. Here, we demonstrate the successful synthesis of nanoribbons having four-membered ring (cyclobutadienoid) linkages by using an on-surface synthesis approach involving direct contact transfer of coronene-type precursors followed by thermally assisted [2 + 2] cycloaddition. The resulting coronene-cyclobutadienoid nanoribbons feature a narrow 600-meV bandgap and novel electronic frontier states that can be interpreted as linear chains of effective p x and p y pseudo-atomic orbitals. We show that these states give rise to exceptional physical properties, such as a rigid indirect energy gap. This provides a previously unexplored strategy for constructing narrow gap GNRs via modification of precursor molecules whose function is to modulate the coupling between adjacent four-membered ring states.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Redundancy in Aromatic O -Demethylation and Ring-Opening Reactions in Novosphingobium aromaticivorans and Their Impact in the Metabolism of Plant-Derived Phenolics

ABSTRACT Lignin is a plant heteropolymer composed of phenolic subunits. Because of its heterogeneity and recalcitrance, the development of efficient methods for its valorization still remains an open challenge. One approach to utilize lignin is its chemical deconstruction into mixtures of monomeric phenolic compounds, followed by biological funneling into a single product. Novosphingobium aromaticivorans DSM 12444 has been previously engineered to produce 2-pyrone-4,6-dicarboxylic acid (PDC) from depolymerized lignin by simultaneously metabolizing multiple aromatics through convergent routes involving the intermediates 3-methoxygallic acid (3-MGA) and protocatechuic acid (PCA). We investigated enzymes predicted to be responsible for O -demethylation and oxidative aromatic ring opening, two critical reactions involved in the metabolism of phenolic compounds by N. aromaticivorans . The results showed the involvement of DesA in O -demethylation of syringic and vanillic acids, LigM in O- demethylation of vanillic acid and 3-MGA, and a new O- demethylase, DmtS, in the conversion of 3-MGA into gallic acid (GA). In addition, we found that LigAB was the main aromatic ring-opening dioxygenase involved in 3-MGA, PCA, and GA metabolism and that a previously uncharacterized dioxygenase, LigAB2, had high activity with GA. Our results indicate a metabolic route not previously identified in N. aromaticivorans that involves O -demethylation of 3-MGA to GA. We predict that this pathway channels ∼15% of the carbon flow from syringic acid, with the rest following ring opening of 3-MGA. The new knowledge obtained in this study allowed for the creation of an improved engineered strain for the funneling of aromatic compounds that exhibits stoichiometric conversion of syringic acid into PDC. IMPORTANCE For lignocellulosic biorefineries to effectively contribute to reduction of fossil fuel use, they need to become efficient at producing chemicals from all major components of plant biomass. Making products from lignin will require engineering microorganisms to funnel multiple phenolic compounds to the chemicals of interest, and N. aromaticivorans is a promising chassis for this technology. The ability of N. aromaticivorans to efficiently and simultaneously degrade many phenolic compounds may be linked to having functionally redundant aromatic degradation pathways and enzymes with broad substrate specificity. A detailed knowledge of aromatic degradation pathways is thus essential to identify genetic engineering targets to maximize product yields. Furthermore, knowledge of enzyme substrate specificity is critical to redirect flow of carbon to desired pathways. This study described an uncharacterized pathway in N. aromaticivorans and the enzymes that participate in this pathway, allowing the engineering of an improved strain for production of PDC from lignin.

Biotechnology & Applied Microbiology↗

Detection of large extracellular silver nanoparticle rings observed during mitosis using darkfield microscopy

During studies on the absorption and interactions between silver nanoparticles and mammalian cells grown in vitro it was observed that large extracellular rings of silver nanoparticles were deposited on the microscope slide, many located near post-mitotic cells. Silver nanoparticles (AgNP, 80nm), coated with citrate, were incubated at concentrations of 0.3 to 30 μg/ml with a human-derived culture of retinal pigment epithelial cells (ARPE-19) and observed using darkfield and fluorescent microscopy, 24 h after treatment. Approximately cell-sized extracellular rings of deposited AgNP were observed on the slides among a field of dispersed individual AgNP. The mean diameter of 45 nanoparticles circles was 62.5 +/-12 microns. Ring structures were frequently observed near what appeared to be post-mitotic daughter cells, giving rise to the possibility that cell membrane fragments were deposited on the slide during mitosis, and those fragments selectively attracted and retained silver nanoparticles from suspension in the cell culture medium. These circular structures were observable for the following technical reasons: 1) darkfield microscope could observe single nanoparticles below 100 nm in size, 2) a large concentration (10 8 and 10 9 ) of nanoparticles was used in these experiments 3) negatively charged nanoparticles were attracted to adhesion membrane proteins remaining on the slide from mitosis. The observation of silver nanoparticles attracted to apparent remnants of cellular mitosis could be a useful tool for the study of normal and abnormal mitosis.

59 BASIC BIOLOGICAL SCIENCES↗

Proposed Longitudinal Profile Diagnostics for Optical Stochastic Cooling of Stored Electrons in the IOTA Ring

One of the predicted signatures of successful optical stochastic cooling (OSC) in the Fermilab Integrable Optics Test Accelerator (IOTA) ring is reduction of the bunch length. The IOTA OSC experiment is designed for a low nominal beam current (~0.1 microAmps of 100-MeV electrons) to reduce intrabeam scattering (IBS), and during cooling, OSC is expected to reduce the bunch length from ~200 ps to ~130 ps*. These equilibrium bunch lengths can be measured using a streak camera and the optical synchrotron radiation (OSR) generated in a ring dipole by the circulating beam. A similar measurement was previously performed at the Advanced Photon Source with a Hamamatsu C5680 synchroscan streak camera operating at 117.3 MHz**. In this case, synchronous summing of OSR resulted in a bunch length measurement of 276 ± 30 ps using only 57 electrons circulating at 425 MeV. At IOTA, an existing streak camera has been modified to operate at the 11th harmonic of the ring’s revolution frequency of 7.50 MHz and has been installed on an OSR port in support of the OSC experiments. The integrated system will have sufficient sensitivity and resolution for measuring the evolution and equilibrium values of the bunch length during OSC experiments.

Lumpkin, Alex H.↗

Observation of Undulator Radiation Generated by a Single Electron Circulating in a Storage Ring and Possible Applications

An experimental study into the undulator radiation, generated by a single electron was carried out at the Integrable Optics Test Accelerator (IOTA) storage ring at Fermilab. The individual photons were detected by a Single Photon Avalanche Diode (SPAD) at an average rate of 1 detection per 300 revolutions in the ring. The detection events were continuously recorded by a picosecond event timer for as long as 1 minute at a time. The collected data were used to test if there is any deviation from the classically predicted Poissonian photostatistics. It was motivated by the observation * of sub-Poissonian statistics in a similar experiment. The observation * could be an instrumentation effect related to low detection efficiency and long detector dead time. In our experiment, the detector (SPAD) has a much higher efficiency (65%) and a much lower dead time. In addition, we show that the collected data (recorded detection times) can be used to study the synchrotron motion of a single electron and infer some parameters of the ring. For example, by comparing the results of simulation and measurement for the synchrotron motion we were able to estimate the magnitude of the RF phase jitter.

43 PARTICLE ACCELERATORS↗

Beam-Based Diagnostics of Electric Guide Fields and Lattice Parameters for Run-1 of the Muon g-2 Storage Ring at Fermilab

A portion of the Muon g-2 Storage Ring electric system, which provides vertical beam focusing, exhibited an unexpected time dependence that produced a characteristic evolution of the stored beam during Run-1 of the Muon g-2 Experiment at Fermilab (E989). A method to reconstruct the Run-1 electric guide fields has been developed, which is based on a numerical model of the muon storage ring and optimization algorithms supported by COSY INFINITY. This method takes beam profile measurements from the Muon g-2 straw tracking detectors as input, and it produces a full reconstruction of the time-dependent fields. The fields can then be used for the reproduction of detailed beam tracking simulations and the calculation of ring lattice parameters for acceptance studies and systematic error evaluations.

43 PARTICLE ACCELERATORS↗

Damping-Ring-Free Injector Design for Linear Colliders

The current designs of future electron-positron linear colliders incorporate large and complex damping rings to produce asymmetric beams for beamstrahlung mitigation at the interaction point. This paper presents the design of an damping-ring-free electron injector capable of delivering flat electron beams with phase-space partition comparable to the electron-beam parameters produced downstream of the damping ring in the proposed international linear collider (ILC) design. The performance of the proposed configuration, its sensitivity to jitter along with its impact on spin-polarization is discussed.

43 PARTICLE ACCELERATORS↗

Spin-transparent storage rings for quantum computing

Spin-transparent storage rings, where any spin direction repeats after one full turn, can be used in conjunction with ion traps as a new quantum computing platform [1]. Advantages of spin-transparent rings for quantum computing include: large numbers of stored qubits; long quantum coherence times of up to several hours; long storage lifetimes; and room temperature operation. These exceptional qualities mean rings could provide a scalable way to implement algorithms with deep complexity requiring many quantum operations while simultaneously providing a large number of qubits. This new platform where the qubit has long quantum coherence time can also be used as a quantum sensor or a part of a quantum memory.

Accelerator Physics↗

Dynamic aperture studies at the Fermilab recycler ring

As part of the Proton Improvement Plan II (PIP-II), Fermilab aims to increase beam intensity delivered to neutrino experiments. In this context, higher intensity injection into the Recycler Ring enhances space charge effects, pushing operations closer to third-order resonances. These resonances reduce the Dynamic Aperture (DA), leading to increased beam loss. This study presents simulations of DA as a function of tune in the Recycler Ring, incorporating chaos indicators such as the Reversibility Error Method (REM) and Frequency Map Analysis (FMA). The effectiveness of existing resonance mitigation strategies is evaluated by quantifying their ability to delay DA degradation. Additionally, the study examines how space charge detuning and DA limitations dictate viable operational tune points for the Recycler Ring.

Gonzalez-Ortiz, Cristhian [Fermilab]↗

Using Forward-Reversal Integration to Optimize EIC's e-ring Dynamic Aperture

The forward-reversal integration has been proved efficient in optimizing the dynamic aperture for light source rings, which usually have a multi-fold periodical lattice structure. This method has been integrated into the ELEGANT code since the version 2019.4. In this technote, this approach has been used to optimize the dynamic aperture of a collider ring, i.e., the future electron ion collider’s (EIC) e-ring.

43 PARTICLE ACCELERATORS↗

Measured vs. Calculated Dose Rates During Ring Injection Dump Replacement

One of the most irradiated Spallation Neutron Source (SNS) accelerator components is the ring injection dump (RID), which is located downstream of the accumulator ring injection section. The unstripped and only partially stripped H - beam, about 5% of the full SNS beam current, is discarded in the injection into the accumulator ring and is redirected to the RID. According to the accelerator operation plan, the beam stop and the window assemblies of the existing RID are removed and replaced when they have reached their end-of-life owing to radiation exposure. This procedure, which includes multiple steps, took place during a facility maintenance period in March 2023. To support work planning and meet as low as reasonably achievable (ALARA) requirements during removal and exchange of the components, dose rates were calculated for each stage of the exchange operation. During each stage, dose rates were measured before and after work. This comparison shows that measured dose rates are within a factor of 2 of the predicted (calculated) dose rates.

43 PARTICLE ACCELERATORS↗

Dynamic Aperture Studies at the Fermilab Recycler Ring

As part of the Proton Improvement Plan II (PIP-II), Fermilab aims to increase beam intensity delivered to neutrino experiments. In this context, higher intensity injection into the Recycler Ring enhances space charge effects, pushing operations closer to third-order resonances. These resonances reduce the Dynamic Aperture (DA), leading to increased beam loss. This study presents simulations of DA as a function of tune in the Recycler Ring, incorporating chaos indicators such as the Reversibility Error Method (REM). The effectiveness of existing resonance mitigation strategies is evaluated by quantifying their ability to delay DA degradation. Additionally, the study examines how space charge detuning and DA limitations dictate viable operational tune points for the Recycler Ring.

Gonzalez-Ortiz, Cristhian Eduardo [Fermilab]↗

Assessment of BPM options for the EIC Beam Accumulator Ring

The electron injection system for the Electron-Ion Collider (EIC) at BNL is designed to provide a beam of polarized electrons, which is crucial for studying the structure of protons and atomic nuclei. The Beam Accumulator Ring (BAR) is a part of the injection chain between the 750 MeV linear accelerator and the Rapid Cycling Synchrotron (RCS), which accelerates the beam up to full energy (5–18 GeV). The functional role of the BAR is to accumulate the charge injected from the linear accelerator in order to achieve the high intensity of the polarized electron beam required by the specifications for injection into the RCS. This objective will be realized through the sequential injection of bunches with a charge of 1.1 nC at a repetition rate of 30 Hz. Once the charge of a single bunch reaches 28 nC, the beam will be extracted from the BAR and injected into the RCS. The beam instrumentation needs to provide reliable measurements with the required accuracy over the dynamic range from 0.1 nC (one tenth of a typical injected bunch charge) to 32 nC – the maximum expected accumulated current. There are 10 Beam Position Monitors (BPMs) in the ring, 1 extra button-electrode assembly for the RF system, and 8 BPMs in the beam transport lines. The BPM locations are shown in Fig. 1, marked by blue rectangles. The ring BPMs will be capable of both average orbit and turn-by-turn measurement modes. Accurate measurement of the beam position with a large horizontal offset requires polynomial correction of the BPM nonlinearity.

43 PARTICLE ACCELERATORS↗

CFD simulations of electric motor end ring cooling for improved thermal management

Proper thermal management of an electric motor for vehicle applications extends its operating range. One cooling approach is to impinge Automatic Transmission Fluid (ATF) onto the rotor end ring. Increased ATF coverage correlates to enhanced heat transfer. Computational Fluid Dynamics (CFD) analytical tools provide a mechanism to assess motor thermal management prior to hardware fabrication. The complexity of the fluid flow (e.g., jet atomization, interface tracking, wall impingement) and heat transfer makes these simulations challenging. Computational costs are high when solving these flows on high-speed rotating meshes. Typically, a Volume-of Fluid (VOF) technique (i.e., two-fluid system) is used to resolve ATF dynamics within this rotating framework. Suitable numerical resolution of the relevant physics for thin films under strong inertial forces at high rotor speeds is computationally expensive, further increasing the run times. In this work, a numerical study of rotor-ring cooling by ATF is presented using a patent automated Cartesian cut-cell based method coupled with Automatic Mesh Refinement (AMR). This approach automatically creates the Cartesian mesh on-the-fly and can effectively handle complex rotating geometries by adaptively refining the mesh based on local gradients in the flow field which results in better resolution of the air-ATF interface. A Single non-inertial Reference Frame (SRF) approach is used to account for the rotating geometry and to further improve the overall computational efficiency. Quasi-steady state conditions are targeted in the analysis of the results. Important physics such as ATF jet structure, velocity detail near the air-jet interface, ATF coverage/accumulation on the ring surface, and cooling capacity are presented for a low-resolution Reynolds averaged Navier-Stokes (RANS), high-resolution RANS, and high-resolution Large-Eddy Simulation (LES) models. Computations are scaled over hundreds of cores on a supercomputer to maximize turnaround time. Each numerical approach is shown to capture the general trajectory of the oil jet prior to surface impingement. The high-resolution LES simulation, however, is superior in capturing small scale details and heat transfer between the free jet and surrounding air.

42 ENGINEERING↗

First M87 Event Horizon Telescope Results. VII. Polarization of the Ring

In 2017 April, the Event Horizon Telescope (EHT) observed the near-horizon region around the supermassive black hole at the core of the M87 galaxy. These 1.3 mm wavelength observations revealed a compact asymmetric ring-like source morphology. This structure originates from synchrotron emission produced by relativistic plasma located in the immediate vicinity of the black hole. Here we present the corresponding linear-polarimetric EHT images of the center of M87. We find that only a part of the ring is significantly polarized. The resolved fractional linear polarization has a maximum located in the southwest part of the ring, where it rises to the level of ~15%. The polarization position angles are arranged in a nearly azimuthal pattern. We perform quantitative measurements of relevant polarimetric properties of the compact emission and find evidence for the temporal evolution of the polarized source structure over one week of EHT observations. The details of the polarimetric data reduction and calibration methodology are provided. We carry out the data analysis using multiple independent imaging and modeling techniques, each of which is validated against a suite of synthetic data sets. The gross polarimetric structure and its apparent evolution with time are insensitive to the method used to reconstruct the image. These polarimetric images carry information about the structure of the magnetic fields responsible for the synchrotron emission. Their physical interpretation is discussed in an accompanying publication.

79 ASTRONOMY AND ASTROPHYSICS↗

Origin of the ring ellipticity in the black hole images of M87*

We investigate the origin of the elliptical ring structure observed in the images of the supermassive black hole M87*, aiming to disentangle contributions from gravitational, astrophysical, and imaging effects. Leveraging the enhanced capabilities of the Event Horizon Telescope (EHT)'s 2018 array, including improved (u,v)-coverage from the Greenland Telescope, we measured the ring's ellipticity using five independent imaging methods, obtaining a consistent average value of τ = 0.08−0.02+0.03 with a position angle of ξ = 50.1−7.6+6.2 degrees. To interpret this measurement, we compared it to general relativistic magnetohydrodynamic (GRMHD) simulations spanning a wide range of physical parameters including the thermal or nonthermal electron distribution function, spins, and ion-to-electron temperature ratios in both low- and high-density regions. We find no statistically significant correlation between spin and ellipticity in GRMHD images. Instead, we identify a correlation between ellipticity and the fraction of non-ring emission, particularly in nonthermal models and models with higher jet emission. These results indicate that the ellipticity measured from the M87* emission structure is consistent with that expected from simulations of turbulent accretion flows around black holes, where it is dominated by astrophysical effects rather than gravitational ones. Future high-resolution imaging, including space very long baseline interferometry and long-term monitoring, will be essential to isolate gravitational signatures from astrophysical effects.Key words: accretion, accretion disks / black hole physics / gravitation / galaxies: active** These authors have contributed equally to this work.*** NASA Hubble Fellowship Program, Einstein Fellow.† Deceased.

Dahale, Rohan [Granada U., Theor. Phys. Astrophys.↗