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NASA NTRS1995

The analysis of control trajectories using symbolic and database computing

This final report comprises the formal semi-annual status reports for this grant for the periods June 30-December 31, 1993, January 1-June 30, 1994, and June 1-December 31, 1994. The research supported by this grant is broadly concerned with the symbolic computation, mixed numeric-symbolic computation, and database computation of trajectories of dynamical systems, especially control systems. A review of work during the report period covers: trajectories and approximating series, the Cayley algebra of trees, actions of differential operators, geometrically stable integration algorithms, hybrid systems, trajectory stores, PTool, and other activities. A list of publications written during the report period is attached.

Grossman, Robert↗

NASA NTRS2016

Fast, Safe, Propellant-Efficient Spacecraft Motion Planning Under Clohessy-Wiltshire-Hill Dynamics

This paper presents a sampling-based motion planning algorithm for real-time and propellant-optimized autonomous spacecraft trajectory generation in near-circular orbits. Specifically, this paper leverages recent algorithmic advances in the field of robot motion planning to the problem of impulsively actuated, propellant- optimized rendezvous and proximity operations under the Clohessy-Wiltshire-Hill dynamics model. The approach calls upon a modified version of the FMT* algorithm to grow a set of feasible trajectories over a deterministic, low-dispersion set of sample points covering the free state space. To enforce safety, the tree is only grown over the subset of actively safe samples, from which there exists a feasible one-burn collision-avoidance maneuver that can safely circularize the spacecraft orbit along its coasting arc under a given set of potential thruster failures. Key features of the proposed algorithm include 1) theoretical guarantees in terms of trajectory safety and performance, 2) amenability to real-time implementation, and 3) generality, in the sense that a large class of constraints can be handled directly. As a result, the proposed algorithm offers the potential for widespread application, ranging from on-orbit satellite servicing to orbital debris removal and autonomous inspection missions.

spacecraft relative motio↗

DOE OSTI2017

Upscaling transpiration in diverse forests: Insights from a tropical premontane site

Upscaling water use of individual trees to stands using sap flux techniques is a common method for partitioning site water balance, but few such studies have occurred in the tropics. Increasing interests in the role of tropical forests in global cycles have spurred upscaling studies in natural tropical forests, which present challenges from greater tree species and functional diversity, and potential factors that would reduce transpiration, such as frequent cloud cover and wet canopy conditions. In a premontane wet tropical forest in central Costa Rica, sap flow was measured in 15 trees stratified into 5 size classes based on tree diameters. None of the trees belonged to the same species, genus, or even family. Here, we also accounted for potential radial variation in sap flux density. Data were scaled to estimate transpiration within a small 2.2-ha watershed using stand surveys of sapwood area. Stand transpiration averaged only 1.4 ± 0.7 mm day -1 within this forested watershed due to persistent low radiation, evaporative demand, and frequent wet canopy conditions. Our systematic approach used tree size attributes to scale water use to the stand, given difficulties to quantify species differences in such a diverse ecosystem. Contrary to previous evidence on temperate trees, the large trees sampled did not exhibit flow reductions in deeper sapwood, which warrants further study. Finally, these results highlight some unique aspects of measuring transpiration in wet tropical forests that are important to consider for future studies in diverse stands.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Impacts of Riparian and Non-riparian Woody Encroachment on Tallgrass Prairie Ecohydrology

Woody encroachment has impacted grassland ecohydrology worldwide, prompting management strategies aimed at woody vegetation removal to prevent or mitigate loss of water yield. For this work, we measured stream discharge following sustained cutting of riparian trees (2010–2020) in a native tallgrass prairie (northeastern Kansas, USA). Discharge has declined at this site since the 1980’s despite a concurrent increase in precipitation. This decline has been previously attributed to increased transpiration of stream water by riparian vegetation. We used water stable isotopes (δ 18 O and δ 2 H) to determine whether riparian grasses, shrubs, and trees primarily used stream/groundwater or soil water. Additionally, we quantified the increase in riparian and non-riparian woody cover (1978–2020) and combined it with sap-flux data to estimate changes in transpirative water loss. Sustained cutting of riparian trees did not result in increased discharge. Rather than stream/groundwater, the largest proportion of water used by riparian trees (Quercus spp.) was deep soil water. Cornus drummondii (clonal woody shrub) used a higher proportion of stream water and had greater overall variability in water-use. Riparian shrub cover increased about 57% from 1978 to 2020. Over the same time period, shrub cover increased about 20% in areas outside the riparian zone, resulting in an estimated 25% increase in daily transpirative water loss. Although stream water use was less than 50% for all riparian zone species, the total increase in shrub cover on this watershed, coupled with higher transpiration rates of shrubs, suggests that these woody species—within and outside the riparian zone—are key contributors to observed declines in stream flow in this system.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

SPRUCE S1 Bog Tree Basal Area and Understory Community Composition Assessed in the Southern and Northern Ends of the S1 Bog

The composition and cover of woody and understory species, along with the timing of stem growth, were characterized near minirhizotron installations at the south and north ends of the S1 bog in order to understand the relationship between root dynamics and the surrounding plant communities. There are three data streams: (1) Woody species basal area -- the number, basal area, and distance from the center point of all trees within a 5-m radius of each minirhizotron pair, which were quantified in 2011, (2) Understory cover -- the understory vascular plant community composition and percent cover, which were surveyed in 1 m2 areas at four cardinal directions adjacent to each pair of minirhizotrons in June 2011, and (3) Stem growth -- the basal area increment (stem growth) of nearby trees, which was quantified using automated or manual dendrobands in 2011 and 2012, respectively. The measurements were made in the S1-Bog of the Marcell Experimental Forest (MEF) near Grand Rapids, Minnesota.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2016

Extension of the ADAPT Framework for Multiple Simulators

Probabilistic Risk Assessment (PRA) uses fault tree/event tree analysis to evaluate the environmental impacts of nuclear power plants due to internal or external initiating events. In a fault tree, basic failure events are assembled using primarily And/Or logic to determine the combinations of failures that lead to failure of the system as a whole. An event tree is forward-facing, and begins with a single initiating event. From there the analysis considers what event may occur next, and branches out among the possible configurations of occurrence and non-occurrence of that event. This branching continues until end states are reached. End states may include a safe and stable configuration of the plant, or any number of differing failure states. Both fault and event trees require basic event probabilities as inputs to provide insight on the likelihood of different outcomes. PRA has been applied to nuclear power plants as an analysis tool since the 1975 Reactor Safety Study. In a traditional PRA, the order of events is prescribed by the analyst and each event is typically a binary aleatory uncertainty: occurrence or non-occurrence. Discrete dynamic event tree (DDET) analysis eliminates this subjectivity in ordering of events by using the output of a dynamic system model (simulator) to inform the branching. Branching conditions are triggered by the existence of a relevant plant state in the code, and therefore only occur as physically appropriate. The DDET approach also allows consideration of both epistemic and aleatory uncertainties on a phenomenologically and stochastically consistent platform. One limitation of the DDET driver codes developed to date (namely ADAPT, ADS, and MCDET ) is that the tree is driven by a single simulator. The goal of this work is a general multi-simulator driver. This limits the parameter space that may be explored in a single DDET to that which may be covered by a single simulator. In this work, the Analysis of Dynamic Accident Progression Trees (ADAPT) code is extended to support multiple arbitrary simulators. This capability will increase the depth and breadth of phenomena that may be analyzed in a single DDET. For example, a large-scale system code may pass the analysis to a more detailed code if certain conditions are met, in order to capture relevant phenomena that would be lost if only the system code were to be used. In addition, the time required to cover a given uncertainty space may be reduced by dynamically identifying and running only the situations that are appropriate given the plant conditions in each simulator. The use of multiple simulators is expected to further reduce subjectivity in PRA by enabling high fidelity modeling of reality. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2025

deadtrees.earth — An open-access and interactive database for centimeter-scale aerial imagery to uncover global tree mortality dynamics

Excessive tree mortality is a global concern and remains poorly understood as it is a complex phenomenon. We lack global and temporally continuous coverage on tree mortality data. Ground-based observations on tree mortality, e.g., derived from national inventories, are very sparse, and may not be standardized or spatially explicit. Earth observation data, combined with supervised machine learning, offer a promising approach to map overstory tree mortality in a consistent manner over space and time. However, global-scale machine learning requires broad training data covering a wide range of environmental settings and forest types. Low altitude observation platforms (e.g., drones or airplanes) provide a cost-effective source of training data by capturing high-resolution orthophotos of overstory tree mortality events at centimeter-scale resolution. Here, we introduce deadtrees.earth, an open-access platform hosting more than two thousand centimeter-resolution orthophotos, covering more than 1,000,000 ha, of which more than 58,000 ha are manually annotated with live/dead tree classifications. This community-sourced and rigorously curated dataset can serve as a comprehensive reference dataset to uncover tree mortality patterns from local to global scales using space-based Earth observation data and machine learning models. This will provide the basis to attribute tree mortality patterns to environmental changes or project tree mortality dynamics to the future. The open nature of deadtrees.earth, together with its curation of high-quality, spatially representative, and ecologically diverse data will continuously increase our capacity to uncover and understand tree mortality dynamics.

Citizen science↗

NASA NTRS1986

A simple biosphere model (SiB) for use within general circulation models

A simple realistic biosphere model for calculating the transfer of energy, mass and momentum between the atmosphere and the vegetated surface of the earth has been developed for use in atmospheric general circulation models. The vegetation in each terrestrial model grid is represented by an upper level, representing the perennial canopy of trees and shrubs, and a lower level, representing the annual cover of grasses and other heraceous species. The vegetation morphology and the physical and physiological properties of the vegetation layers determine such properties as: the reflection, transmission, absorption and emission of direct and diffuse radiation; the infiltration, drainage, and storage of the residual rainfall in the soil; and the control over the stomatal functioning. The model, with prescribed vegetation parameters and soil interactive soil moisture, can be used for prediction of the atmospheric circulation and precipitaion fields for short periods of up to a few weeks.

Sellers, P. J.↗

NASA NTRS1986

A brief description of the simple biosphere model (SiB)

A biosphere model for calculating the transfer of energy, mass, and momentum between the atmosphere and the vegetated surface of the Earth was designed for atmospheric general circulation models. An upper vegetation layer represents the perennial canopy of trees or shrubs, a lower layer represents the annual ground cover of grasses and other herbacious species. The local coverage of each vegetation layer may be fractional or complete but as the individual vegetation elements are considered to be evenly spaced, their root systems are assumed to extend uniformly throughout the entire grid-area. The biosphere has seven prognostic physical-state variables: two temperatures (one for the canopy and one for the ground cover and soil surface); two interception water stores (one for the canopy and one for the ground cover); and three soil moisture stores (two of which can be reached by the vegetation root systems and one underlying recharge layer into and out of which moisture is transferred only by hydraulic diffusion).

Sellers, P. J.↗

NASA NTRSDate not supplied

Employing NASA Earth Observations and Socioeconomic Data to Conduct Site Suitability Analyses on Residential Tree Planting Initiatives in Phoenix, Arizona

Phoenix, Arizona is the hottest large city in the United States with an average summer daytime temperature of 106°F. Temperatures in Phoenix continue to climb due to increasing global greenhouse gas concentrations and regional urbanization. The impacts of high temperatures, including heat-related illnesses and deaths, are disproportionately concentrated in low-income neighborhoods often characterized by little tree canopy, lack of green space, and insufficient access to shade. The City of Phoenix’s Office of Heat Response and Mitigation and Arizona State University’s Urban Climate Research Center, partnered with NASA DEVELOP to identify residential neighborhoods and parcels within qualified census tracts (QCTs) to be prioritized for tree planting initiatives using funding from the American Rescue Plan Act (ARPA). This project conducted analyses using NASA Earth observations, socioeconomic data from the 2019 American Community Survey, and local tree canopy and mobility data. For Earth observations, daytime land surface temperature, vegetation, and land cover were obtained from the Landsat 8 Thermal Infrared Sensor (TIRS) and Operational Land Imager (OLI). The project team incorporated these data into a heat vulnerability index (HVI) with an emphasis on tree canopy and social vulnerability to rank block groups within QCTs and focused on the resulting top 25 block group HVI scores. These top 25 most vulnerable block groups were then processed through a parcel analysis to determine the feasibility of residential tree planting based on building footprints on each parcel. Within the top 25 block groups, 2,411 parcels were analyzed, and 3,133 existing trees were identified averaging 1.3 trees per parcel with 90% of parcels having 3 trees or less. Homes with 2 trees or fewer were considered high priority for future planting efforts. Based on the City’s goals for increased tree canopy the project team determined that <10,000 additional trees would need to be planted within the most vulnerable 25 block groups. The project findings have helped initiate community engagement efforts and have contributed to the approval of tree planting funds in Phoenix.

Ryan Hammock↗

NASA NTRS2016

Tree Canopy Light Interception Estimates in Almond and a Walnut Orchards Using Ground, Low Flying Aircraft, and Satellite Based Methods to Improve Irrigation Scheduling Programs

Canopy light interception is a main driver of water use and crop yield in almond and walnut production. Fractional green canopy cover (Fc) is a good indicator of light interception and can be estimated remotely from satellite using the normalized difference vegetation index (NDVI) data. Satellite-based Fc estimates could be used to inform crop evapotranspiration models, and hence support improvements in irrigation evaluation and management capabilities. Satellite estimates of Fc in almond and walnut orchards, however, need to be verified before incorporating them into irrigation scheduling or other crop water management programs. In this study, Landsat-based NDVI and Fc from NASA's Satellite Irrigation Management Support (SIMS) were compared with four estimates of canopy cover: 1. light bar measurement, 2. in-situ and image-based dimensional tree-crown analyses, 3. high-resolution NDVI data from low flying aircraft, and 4. orchard photos obtained via Google Earth and processed by an Image J thresholding routine. Correlations between the various estimates are discussed.

Satellite↗

NASA NTRSDate not supplied

Ground to Air Testing of a Fused Optical-Radar Aircraft Detection and Tracking System

Onboard detection and tracking capability are integral to the sensing component in collision avoidance systems needed to safely operate autonomous urban air taxis and small Unmanned Aircraft Systems. Ground-based validation of detection and tracking systems is an important milestone towards the end goal of real-time collision avoidance using onboard sensors and algorithms. In this work, we evaluate three Extended Kalman Filter(EKF)based fusion trackers with radar and vision detection inputs, and compare them with baseline trackers for each sensor type. Performance is assessed using field collected data of ground to air test flights with the sensors co-located on a stable platform with an instrumented multirotor acting as the intruder performing a waypoint pattern at a distance of1.1km to 0.3km to simulate a head-on collision geometry. Fusing an image-based morphological detector with a radar detector using an EKF covered 74% of the ground truth position updates logged by the flight controller on the multirotor within 50 meters after accounting for alignment offsets while covering 15% more ground truth updates relative to radar only. Removing timestamps when the intruder aircraft is occluded by trees and only considering timestamps where the radar has an update, the EKF image-based morphological detector combined with the radar detector covered 90% of the of the ground truth position updates within 50metersand 97% within 100 meters.

Chester V Dolph↗

DOE OSTI2025

JGI-Trichoderma v1.0

There is a series of Python and bash scripts to parse genomics datasets used to evaluate the coevolution of gene families and the feature importance of gene families using an SVM classifier. - Cover analysis: takes a list of single-copy genes in a set of genomes, aligns and builds the gene trees to determine if two gene families have a signature of covariation with one another. It parses the files to run phykit cover script described here: https://jlsteenwyk.com/PhyKIT/usage/index.html - SVM-classifier: This Python script is an SVM-based genomic classifier designed for biological data analysis. It combines machine learning with feature selection to identify important genomic markers and classify biological samples. Core Functionality: The script uses Support Vector Machines from scikit-learn to classify genomic data, incorporating SelectKBest for automated feature selection and leave-one-out cross-validation for performance assessment. It operates in multiple modes: feature ranking, optimal combination discovery, and sample prediction. Primary Applications: Genomic sample classification and biomarker discovery Feature importance analysis in high-dimensional biological datasets Prediction of sample categories based on genomic profiles Research applications requiring robust classification of biological data Key Advantages: High-dimensional handling: SVMs excel with genomic data's typical high feature-to-sample ratios Integrated feature selection: Reduces noise and computational overhead while identifying key markers Probability estimation: Provides confidence scores essential for biological interpretation Validation robustness: Leave-one-out cross-validation ensures reliable performance metrics Operational flexibility: Multiple analysis modes support different research phases from exploration to prediction

Stecca Steindorff, Andrei [Lawrence Berkeley Natio↗

NASA NTRS1984

Reflectance Modeling

The main thrust of the work conducted is in the modeling of spectral responses of discontinuous conifer forest canopies, considered as collections of conical forms that are illuminated at an angle and cast shadows on contracting background. The three first-year objectives are: (1) modification of the variance-driven model to incorporate overlapping of shadows and crowns; (2) collection and analysis of photographic data to calibrate tree-spacing functions; and (3) collection of field data to determine height, spacing, and shape of conifers in open and closed stands in the Goosenest (California) test area. Modification of the invertible model uses a linear approximation to correct for the reduction in shadow and canopy area that occurs when shadows fall on crowns or tree crowns intersect. Comparison of the results of the approximation with a series of Monte Carlo simulations shows that the mean area covered by crowns or shadows is approximated quite accurately, but the variance calculated departs significantly from simulated values. The analysis of tree spacing patterns using air photos showed that spacing tended to be somewhat regular at a scale approximately equal to the average distance between trees, but at larger distance scales counts of trees in cells could be approximated acceptably by a Poisson (random) function.

Strahler, A. H.↗

NASA NTRS1981

Wetland mapping with imaging radar

An analysis of Seasat radar imagery is presented to identify the radar signature of vegetation-covered water surfaces. Imagery taken on Aug. 21, 1978 displayed anomalously high returns over swamp lands near Lafayette, LA. Landsat scans of the area two days later revealed uniform vegetation cover in the area, and ground examination found the area to be filled with cypress trees in swamps. Similar results were obtained during an overflight above a region of southeast Arkansas. Mechanisms producing the high degree of reflectance are explored, and the possibility that the strong return is due to an interaction of the vegetation cover and the specular water surface underneath is mentioned. Further studies to identify the exact mechanisms producing the anomalous returns are recommended, as well as optimization of the viewing angle for general classes of vegetation density.

Waite, W. P.↗

DOE OSTI2018

AmeriFlux US-SCw Southern California Climate Gradient - Pinyon/Juniper Woodland

This is the AmeriFlux version of the carbon flux data for the site US-SCw Southern California Climate Gradient - Pinyon/Juniper Woodland. Site Description - Half hourly data are available at https://www.ess.uci.edu/~california/. This site is one of six Southern California Climate Gradient flux towers operated along an elevation gradient (sites are US-SCg, US-SCs, US-SCf, US-SCw, US-SCc, US-SCd). This site is a Pinyon Juniper woodland with trees that are at least 150 years old, and ephemeral herbaceous cover following winter or spring rains. The site has experienced repeated drought during the record and roughly 50% Pinyon mortality over the last decade. A nearby tower site (US-SCc) burned in a 1994 wildfire; comparisons between US-SCw and US-SCc provide a measure of the effects of the 1994 on land-atmosphere exchange.

Goulden, Mike↗

DOE OSTI2018

Impact of Different Vegetative Cover Scenarios on Infiltration Rates for the E-Area PA Intact Case

This memorandum addresses the effects of vegetative cover type (bamboo versus Bahia grass) and the timing of pine tree intrusion on intact infiltration rate for the proposed E-Area Low-Level Waste Facility (LLWF) closure cap system. It builds upon earlier reports whose purpose is to lay the foundation for the infiltration data package that will be assembled during the next revision of the E-Area LLWF Performance Assessment (PA).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains

Altitude significantly affects vegetation growth and distribution, including the developmental stages of a forest. We used shotgun Illumina sequencing to analyze microbial community composition and functional potential in melojo-oak ( Quercus pyrenaica Willd.) rhizospheric soil for three different development stages along an altitudinal gradient: (a) a low altitude, non-optimal site for forest maintenance; (b) an intermediate altitude, optimal site for a forest; and (c) a high altitude, expansion site with isolated trees but without a real forest canopy. We observed that, at each altitude, the same microbial taxa appear both in the taxonomic analysis of the whole metagenome and in the functional analysis of the methane, sulfur and nitrogen metabolisms. Although there were no major differences at the functional level, there were significant differences in the abundance of each taxon at the phylogenetic level between the rhizospheres of the forest (low and intermediate altitudes) and the expansion site. Proteobacteria and Actinobacteria were the most differentially abundant phyla in forest soils compared to the expansion site rhizosphere. Moreover, Verrucomicrobia, Bacteroidetes and Nitrospirae phyla were more highly represented in the non-forest rhizosphere. Our study suggests that rhizospheric microbial communities of the same tree species may be affected by development stage and forest canopy cover via changes in soil pH and the C/N ratio.

59 BASIC BIOLOGICAL SCIENCES↗