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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 181 records · Page 10

Improvement of Radiative Fluxes for the CERES FluxByCldTyp Data Product Based on Machine Learning Technique

The NASA Clouds and the Earth's Radiant Energy System (CERES) product provides over 20 years of accurately observed top-of-the-atmosphere (TOA) and surface flux data record for climate monitoring and diagnostic studies. The interaction between clouds and radiation interaction is a key factor that dominate climate feedbacks but is not well understood. To further advance our understanding of the cloud-radiation interaction, a new CERES FluxByCldTyp (FBCT) product has been developed that contains radiative fluxes by cloud-type, which can provide more stringent constraints when validating models and reveal more insight into the interactions between clouds and climate. For CERES partly cloudy and multiple cloud-type footprints, the FBCT product utilizes Moderate Resolution Imaging Spectroradiometer (MODIS) narrow-band (NB) imager channel radiances partitioned by cloud-type within a CERES footprint to estimate the cloud-type broadband fluxes. The MODIS multi-channel derived broadband fluxes were compared with the CERES observed footprint fluxes and were found to be within 1% and 2.5% for LW and SW, respectively, as well as being mostly free of cloud property dependencies. The FBCT all-sky and clear-sky monthly averaged fluxes were found to be consistent with the CERES SSF1deg product. This study takes advantage of recent progress in machine learning (ML) field by applying deep neural network algorithm to improve fluxes based on MODIS NB radiances. The preliminary study shows ML produce are an improvement over the current FBCT Edition 4 NB2BB algorithm. Furthermore, unlike Ed4 NB2BB, the new ML method convert NB radiances directly to broadband fluxes. For future Ed5, new NB radiances are proposed and used by ML to improve fluxes calculation. Prelimary results show significant LW improvement.

Moguo Sun↗

Improving Radiative Fluxes for the CERES FluxByCldTyp Data Product Using Deep Neural Network

The NASA Clouds and the Earth's Radiant Energy System (CERES) product provides over 20 years of accurately observed top-of-the-atmosphere (TOA) and surface flux data record for climate monitoring and diagnostic studies. The interaction between clouds and radiation interaction is a key factor that dominate climate feedbacks but is not well understood. To further advance our understanding of the cloud-radiation interaction, a new CERES FluxByCldTyp (FBCT) product has been developed that contains radiative fluxes by cloud-type, which can provide more stringent constraints when validating models and reveal more insight into the interactions between clouds and climate. For CERES partly cloudy and multiple cloud-type footprints, the FBCT product utilizes Moderate Resolution Imaging Spectroradiometer (MODIS) narrow-band (NB) imager channel radiances partitioned by cloud-type within a CERES footprint to estimate the cloud-type broadband fluxes. The MODIS multi-channel derived broadband fluxes were compared with the CERES observed footprint fluxes and were found to be within 1% and 2.5% for LW and SW, respectively, as well as being mostly free of cloud property dependencies. The FBCT all-sky and clear-sky monthly averaged fluxes were found to be consistent with the CERES SSF1deg product. This study takes advantage of recent progress in machine learning (ML) field by applying deep neural network algorithm to improve fluxes based on MODIS NB radiances. The preliminary study shows ML produce are an improvement over the current FBCT Edition 4 NB2BB algorithm. Furthermore, unlike Ed4 NB2BB, the new ML method convert NB radiances directly to broadband fluxes. For future Ed5, new NB radiances are proposed and used by ML to improve fluxes calculation. Preliminary results show significant LW improvement.

Sun, Moguo↗

Digital avionics systems - Principles and practices (2nd revised and enlarged edition)

The state of the art in digital avionics systems is surveyed. The general topics addressed include: establishing avionics system requirements; avionics systems essentials in data bases, crew interfaces, and power; fault tolerance, maintainability, and reliability; architectures; packaging and fitting the system into the aircraft; hardware assessment and validation; software design, assessment, and validation; determining the costs of avionics.

Spitzer, Cary R.↗

Adaptive laboratory evolution and genetic engineering improved terephthalate utilization in Pseudomonas putida KT2440

Poly(ethylene terephthalate) (PET) is one of the most ubiquitous plastics and can be depolymerized through biological and chemo-catalytic routes to its constituent monomers, terephthalic acid (TPA) and ethylene glycol (EG). TPA and EG can be re-synthesized into PET for closed-loop recycling or microbially converted into higher-value products for open-loop recycling. Here, in this study, we expand on our previous efforts engineering and applying Pseudomonas putida KT2440 for PET conversion by employing adaptive laboratory evolution (ALE) to improve TPA catabolism. Three P. putida strains with varying degrees of metabolic engineering for EG catabolism underwent an automation-enabled ALE campaign on TPA, a TPA and EG mixture, and glucose as a control. ALE increased the growth rate on TPA and TPA-EG mixtures by 4.1- and 3.5-fold, respectively, in approximately 350 generations. Evolved isolates were collected at the midpoints and endpoints of 39 independent ALE experiments, and growth rates were increased by 0.15 and 0.20 h -1 on TPA and a TPA-EG, respectively, in the best performing isolates. Whole-genome re-sequencing identified multiple converged mutations, including loss-of-function mutations to global regulators gacS, gacA, and turA along with large duplication and intergenic deletion events that impacted the heterologously-expressed tphAB II catabolic genes. Reverse engineering of these targets confirmed causality, and a strain with all three regulators deleted and second copies of tphAB II and tpaK displayed improved TPA utilization compared to the base strain. Taken together, an iterative strain engineering process involving heterologous pathway engineering, ALE, whole genome sequencing, and genome editing identified five genetic interventions that improve P. putida growth on TPA, aimed at developing enhanced whole-cell biocatalysts for PET upcycling.

36 MATERIALS SCIENCE↗

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays

Abstract Summary Polymerase chain reaction-based assays are the current gold standard for detecting and diagnosing SARS-CoV-2. However, as SARS-CoV-2 mutates, we need to constantly assess whether existing PCR-based assays will continue to detect all known viral strains. To enable the continuous monitoring of SARS-CoV-2 assays, we have developed a web-based assay validation algorithm that checks existing PCR-based assays against the ever-expanding genome databases for SARS-CoV-2 using both thermodynamic and edit-distance metrics. The assay-screening results are displayed as a heatmap, showing the number of mismatches between each detection and each SARS-CoV-2 genome sequence. Using a mismatch threshold to define detection failure, assay performance is summarized with the true-positive rate (recall) to simplify assay comparisons. Availability and implementation The assay evaluation website and supporting software are Open Source and freely available at https://covid19.edgebioinformatics.org/#/assayValidation, https://github.com/jgans/thermonucleotide BLAST and https://github.com/LANL-Bioinformatics/assay_validation. Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Language Barriers in Organismal Biology: What Can Journals Do Better?

Synopsis In the field of organismal biology, as in much of academia, there is a strong incentive to publish in internationally recognized, highly regarded, English-language journals to promote career advancement. This expectation has created a linguistic hegemony in scientific publishing, whereby scholars for whom English is an additional language face additional barriers to achieving the same scientific recognition as scholars who speak English as a first language. Here, we surveyed the author guidelines of 230 journals in organismal biology with impact factors of 1.5 or greater for linguistically inclusive and equitable practices and policies. We looked for efforts that reflect first steps toward reducing barriers to publication for authors globally, including the presence of statements that encouraged submissions from authors of diverse nationalities and backgrounds, policies regarding manuscript rejection based on perceived inadequacies of the English language, the existence of bias-conscious reviewer practices, whether translation and editing resources or services are available, allowance for non-English abstracts, summaries, or translations, and whether journals offer license options that would permit authors (or other scholars) to translate their work and publish it elsewhere. We also directly contacted a subset of journals to verify whether the information on their author guidelines page accurately reflects their policies and the accommodations they would make. We reveal that journals and publishers have made little progress toward beginning to recognize or reduce language barriers. Counter to our predictions, journals associated with scientific societies did not appear to have more inclusive policies compared to non-society journals. Many policies lacked transparency and clarity, which can generate uncertainty, result in avoidable manuscript rejections, and necessitate additional time and effort from both prospective authors and journal editors. We highlight examples of equitable policies and summarize actions that journals can take to begin to alleviate barriers to scientific publishing.

Nolde-Lopez, B.↗

CRISPR Tools for Engineering Prokaryotic Systems: Recent Advances and New Applications

In the past decades, the broad selection of CRISPR-Cas systems has revolutionized biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in a molecular engineering perspective, we recapitulate the different CRISPR components and how they can be designed for specific genetic engineering applications. We first introduce the repertoire of Cas proteins and tethered effectors used to program new biological functions through gene editing and gene regulation. We review current guide RNA (gRNA) design strategies and computational tools and how CRISPR-based genetic circuits can be constructed through regulated gRNA expression. Then, we present recent advances in CRISPR-based biosensing, bioproduction, and biotherapeutics across in vitro and in vivo prokaryotic systems. Finally, we discuss forthcoming applications in prokaryotic CRISPR technology that will transform synthetic biology principles in the near future.

59 BASIC BIOLOGICAL SCIENCES↗

Transforming Drainage Research Data (USDA-NIFA Award No. 2015-68007-23193)

This dataset contains research data compiled by the “Managing Water for Increased Resiliency of Drained Agricultural Landscapes” project a.k.a. Transforming Drainage. This project was funded from 2015-2021 by the United States Department of Agriculture, National Institute of Food and Agriculture (USDA-NIFA, Award No. 2015-68007-23193). Data are also available from a separate web-accessible application (drainagedata.org). At drainagedata.org, users can visualize the data with customized tools, query based on specific sites and measurements of interest, and access site photographs, maps, summaries, and publications. Additional data or edits made following the publication of this data here at USDA NAL Ag Data Commons will be posted under the Versions tab on drainagedata.org. These data began in 1996 and include plot- and field-level measurements for 39 experiments across the Midwest and North Carolina. Practices studied include controlled drainage, drainage water recycling, and saturated buffers. In total, 219 variables are reported and span 207 site-years for tile drainage, 154 for nitrate-N load, 181 for water quality, 92 for water table, and 201 for crop yield.

Modeling↗

Aircraft simulation data management - A prototype system

Piloted flight simulations are used throughout the aircraft development process to evaluate design concepts, handling qualities and operational procedures. Simulation project managers are often inundated with data but without a convenient and efficient way to make the correlations and analyses necessary to evaluate system performance. A computer-based Simulation Management System (SIMS) is under development. SIMS will permit simulation project engineers to quickly acquire, access, display, edit, analyze, and document the information necessary to more efficiently manage the research program. SIMS features interactive, associative access to simulation data. This paper describes SIMDEM, a prototype system designed to demonstrate these concepts and procedures in order to obtain feedback from simulator users to guide system design.

Crane, D. F.↗

Astronomical Data Center Bulletin, volume 1, number 2

Work in progress on astronomical catalogs is presented in 16 papers. Topics cover astronomical data center operations; automatic astronomical data retrieval at GSFC; interactive computer reference search of astronomical literature 1950-1976; formatting, checking, and documenting machine-readable catalogs; interactive catalog of UV, optical, and HI data for 201 Virgo cluster galaxies; machine-readable version of the general catalog of variable stars, third edition; galactic latitude and magnitude distribution of two astronomical catalogs; the catalog of open star clusters; infrared astronomical data base and catalog of infrared observations; the Air Force geophysics laboratory; revised magnetic tape of the N30 catalog of 5,268 standard stars; positional correlation of the two-micron sky survey and Smithsonian Astrophysical Observatory catalog sources; search capabilities for the catalog of stellar identifications (CSI) 1979 version; CSI statistics: blue magnitude versus spectral type; catalogs available from the Astronomical Data Center; and status report on machine-readable astronomical catalogs.

Nagy, T. A.↗

High-Fidelity Roadway Modeling and Simulation

Roads are an essential feature in our daily lives. With the advances in computing technologies, 2D and 3D road models are employed in many applications, such as computer games and virtual environments. Traditional road models were generated by professional artists manually using modeling software tools such as Maya and 3ds Max. This approach requires both highly specialized and sophisticated skills and massive manual labor. Automatic road generation based on procedural modeling can create road models using specially designed computer algorithms or procedures, reducing the tedious manual editing needed for road modeling dramatically. But most existing procedural modeling methods for road generation put emphasis on the visual effects of the generated roads, not the geometrical and architectural fidelity. This limitation seriously restricts the applicability of the generated road models. To address this problem, this paper proposes a high-fidelity roadway generation method that takes into account road design principles practiced by civil engineering professionals, and as a result, the generated roads can support not only general applications such as games and simulations in which roads are used as 3D assets, but also demanding civil engineering applications, which requires accurate geometrical models of roads. The inputs to the proposed method include road specifications, civil engineering road design rules, terrain information, and surrounding environment. Then the proposed method generates in real time 3D roads that have both high visual and geometrical fidelities. This paper discusses in details the procedures that convert 2D roads specified in shape files into 3D roads and civil engineering road design principles. The proposed method can be used in many applications that have stringent requirements on high precision 3D models, such as driving simulations and road design prototyping. Preliminary results demonstrate the effectiveness of the proposed method.

Wang, Jie↗

Web-Based Collaborative Publications System: R&Tserve

R&Tserve is a publications system based on 'commercial, off-the-shelf' (COTS) software that provides a persistent, collaborative workspace for authors and editors to support the entire publication development process from initial submission, through iterative editing in a hierarchical approval structure, and on to 'publication' on the WWW. It requires no specific knowledge of the WWW (beyond basic use) or HyperText Markup Language (HTML). Graphics and URLs are automatically supported. The system includes a transaction archive, a comments utility, help functionality, automated graphics conversion, automated table generation, and an email-based notification system. It may be configured and administered via the WWW and can support publications ranging from single page documents to multiple-volume 'tomes'.

Abrams, Steve↗

ctrl-flow v0.0.1

ctrl-flow is a software that assists users in selecting a building control sequence from a library of control sequences that are implemented in the Modelica Buildings Library. The software allows selecting, configuring and editing the control sequences. It also allows exporting the sequence for use in building project design documents in Modelica-based simulations. The export will be in a json intermediate format, in the Modelica Language, in the Control Description Language and in English language format, such as in a Word document. The software functions as a web based application that includes a graphical user interface.

Wetter, Michael↗

An Integrated Testbed for Trojans in Printed Circuit Boards with Fuzzing Capabilities

This paper showcases an all-in-one testing environment that combines Trojan detection and fuzzing capabilities for printed circuit boards using the OpenPLC “NYU Trojan Edition” and a dedicated Trojan detection framework. The demo system is self-contained and equipped with two OpenPLC-based boards (one with a Trojan and one without), and automated tools for inserting the Trojan and collecting side-channel data. We developed a graphical user interface for interactive Trojan selection, data visualization, and anomaly detection analysis.

Trojan detection, anomaly detection, PCB, timing l↗

Dani Sleight Intern Poster

The NRDS Portal is a login-based data storage solution and science data gateway for researchers to centralize and analyze data before publication. Users can upload, edit, review, and approve their own datasets within the site to eventually be published for public use on the main NRDS site. More development was needed to extend NRDS Portal with new Artificial Intelligence features.

99 - GENERAL AND MISCELLANEOUS↗

Pavilion 2 Feature Additions [Slides]

Pavilion 2 is a critical component of system testing for LANL HPC systems. Pavilion 2 is system independent, which allows for the creation of a large suite of generalized tests than can be applied to multiple systems. These additions to Pavilion 2 improve our ability to test systems and diagnose issues. With such a large suite, running the proper tests when diagnosing and fixing a system can be difficult, as well as locating old tests for reference. Test configurations may contain several permutations of a test, not all of which may apply to a given system. The ability to run sets of test permutations lets the tester focus on specific parts of the test without having to edit the test configurations or run extraneous tests. The addition of the filter argument improves the ability to find test results based on test attributes, including past tests. Pavilion 2's system independence is largely based on various layers of configuration files. Configuration files for the host, test, and modes exist to allow generalized testing. The operating system configuration layer can provide helpful OS defaults to a test. Survey, a collection and reporting tool, can help us gauge the performance of a system as well as diagnose issues. The addition of a Survey mode in Pavilion 2 makes running tests with Survey very straightforward. The Survey results are combined with Pavilion 2's test results to make it easy to access.

97 MATHEMATICS AND COMPUTING↗

Pavilion 2 Feature Additions [Slides]

Pavilion 2 is a critical component of system testing for LANL HPC systems. Pavilion 2 is system independent, which allows for the creation of a large suite of generalized tests than can be applied to multiple systems. These additions to Pavilion 2 improve our ability to test systems and diagnose issues. With such a large suite, running the proper tests when diagnosing and fixing a system can be difficult, as well as locating old tests for reference. Test configurations may contain several permutations of a test, not all of which may apply to a given system. The ability to run sets of test permutations lets the tester focus on specific parts of the test without having to edit the test configurations or run extraneous tests. The addition of the filter argument improves the ability to find test results based on test attributes, including past tests. Pavilion 2's system independence is largely based on various layers of configuration files. Configuration files for the host, test, and modes exist to allow generalized testing. The operating system configuration layer can provide helpful OS defaults to a test. Survey, a collection and reporting tool, can help us gauge the performance of a system as well as diagnose issues. The addition of a Survey mode in Pavilion 2 makes running tests with Survey very straightforward. The Survey results are combined with Pavilion 2's test results to make it easy to access.

97 MATHEMATICS AND COMPUTING↗

An autonomous Nimbus Doppler positioning system

A single-pass Doppler positioning system was developed at the GSFC in support of the Nimbus-6 mission. The system was designed to satisfy the following requirements: compatibility with the PDP 11/70 minicomputer; single-pass recovery of up to 250 positions with a two-sigma accuracy of 5 km; high reliability with a minimum of human interaction; and near real-time responsiveness. The system consists of a numerical integrator which includes only the J2 term (earth flattening) of the earth's gravity field, an editing routine, a first guess algorithm, a least squares position recovery program, and a routine for generating a 95% confidence circle based on a computer covariance matrix. An analysis and quantification of the following error sources that limit system accuracy are presented: orbit error, radial aliasing, computational difficulties with overhead passes, oscillator drift, and ambiguity problems. Results of system reliability tests and sample outputs are included.

Garza-Robles, R.↗