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At least 181 records · Page 10

Plant heat stress: Concepts directing future research

Predicted increases in future global temperatures require us to better understand the dimensions of heat stress experienced by plants. In this review we highlight four key areas for improving our approach towards understanding plant heat stress responses. First, although the term "heat stress" is broadly used, that term encompasses heat shock, heat wave, and warming experiments, which vary in the duration and magnitude of temperature increase imposed. A greater integration of results and tools across these approaches is needed to better understand how heat stress associated with global warming will affect plants. Secondly, there is a growing need to associate plant responses to tissue temperatures. We review how plant energy budgets determine tissue temperature and discuss the implications of using leaf versus air temperature for heat stress studies. Third, we need to better understand how heat stress affects reproduction, particularly understudied stages such as floral meristem initiation and development. Fourth, we emphasize the need to integrate heat-stress recovery into breeding programs to complement recent progress in improving plant heat-stress tolerance. Taken together, we provide insights into key research gaps in plant heat stress and provide suggestions on addressing these gaps to enhance heat stress resilience in plants.

54 ENVIRONMENTAL SCIENCES↗

Complementarity of Renewable Energy-Based Hybrid Systems

Increased attention has focused on scenarios of rapid and deep decarbonization of the U.S. electricity supply, with least-cost solutions typically involving significant expansion of renewable energy, energy storage, and transmission assets. Strategies that enable the integration of renewable energy projects while minimizing transmission expansion could be especially valuable in the future. It is within this context that the concept of hybrid power plants (or hybrid energy systems) has gained prominence. One specific example is the FlexPower concept, which seeks to demonstrate how coupling variable renewable energy (VRE) and energy storage technologies can result in renewable-based hybrid power plants that provide full dispatchability and a full range of reliability and resiliency services, similar to or better than fuel-based power plants.

13 HYDRO ENERGY↗

Wind Plant Performance Prediction Benchmark Phase 1 (Technical Report)

Financial risk resulting from the uncertainty associated with developing, owning, and operating wind power plants remains a barrier to reducing the levelized cost of energy (LCOE). On average, modern wind power plants in the U.S. underperform their expected annual energy output by 3.5-4.5% , with many underperforming by over 10%. To compensate for this uncertainty, investors require a larger return on investment (ROI) and apply "knock-down" factors that mask much of the underlying sources of uncertainty. Wind energy projects thus have reduced access to low-cost capital. Furthermore, operating wind plants often take a simple approach to estimating operations & maintenance (O&M) costs (e.g. straight-line estimates based on similar plants), which can eat into profits. To overcome these issues, the wind industry must improve the models they use for estimating wind plant performance and operations. An industry consortium (IC) requested that the National Renewable Energy Laboratory (NREL) lead a Department of Energy (DOE) working group to benchmark the accuracy of wind power plant energy predictions against real operational data. The IC was also motivated by DOE and NREL's potential to characterize systematic energy underperformance, identify sources of uncertainty, and explore root causes. The Wind Plant Performance Prediction (WP3) project was created out of this request, and this report represents the successful completion of Phase 1 of the WP3 project. During the project, wind plant owners provided both pre-construction and operational data to NREL. The pre-construction data was provided to wind resource assessment (WRA) consultants so they could conduct energy yield assessments (EYA). NREL took all of the completed EYAs, along with the operational data, and conducted an operational assessment to benchmark the EYA results against actual operational data. Given the large amounts of sensitive data required for this effort, as well as historical opposition to sharing data within industry, successful completion of Phase 1 represents an unprecedented milestone for industry data sharing. To improve the accuracy and confidence of pre-construction EYAs, wind plant owners and investors need better, more certain, energy yield predictions. The WP3 Benchmark Project is an industry-driven response to this reality. For the first time, industry has taken the important step of working together at scale, sharing valuable operational data with DOE and NREL in order to investigate the sources of bias and uncertainty in these energy estimates. This IC provides wind plant preconstruction and operational data to NREL in an organized and documented fashion and provides guidance and feedback as needed. The IC also provides introspection of the design of experiment, key metrics of success, data challenges, analysis best practices, and quality of results.

17 WIND ENERGY↗

Multicriterion Benefit Evaluation of Deploying New Battery Technology with Increased Capacity at a Generic Nuclear Power

Nuclear power plant (NPP) safety improvements are routinely made by plant licensees and regulators. Examples of plant improvements include accident-tolerant fuel, diverse and flexible coping strategies, passive cooling systems, and increased battery capacity. A combined use of these plant improvements could lead to plant designs with enhanced resilience, allowing NPPs to better cope with both internal and external hazards and keep the plant operating safely, efficiently, and economically. This paper focuses on increased battery capacity and evaluates the potential costs and benefits of deploying batteries with increased capacities at a generic boiling water reactor (BWR) NPP. A multicriterion benefit evaluation methodology is used for the cost-benefit analysis. Ten alternatives for extending battery capacity are developed, including nine alternatives to provide additional direct-current power and one alternative to provide additional alternating-current power. Potential benefits of reducing plant risk are quantified through incorporating the alternatives into loss-of-offsite-power scenarios of the generic BWR probabilistic risk assessment model. Potential costs of implementing the alternatives are qualitatively discussed and ranked. The alternatives are then compared based on their impacts on plant risk and economics.

99 GENERAL AND MISCELLANEOUS↗

Multicriterion Benefit Evaluation of Deploying New Battery Technology with Increased Capacity at a Generic Nuclear Power Plant

This presentation is prepared for the DOE LWRS RISA Pathway Stakeholder Engagement Meeting on October 13-14, 2021. Nuclear power plant (NPP) safety improvements are routinely made by plant licensees and regulators. Examples of plant improvements include accident-tolerant fuel, diverse and flexible coping strategies, passive cooling systems, and increased battery capacity. A combined use of these plant improvements could lead to plant designs with enhanced resilience, allowing NPPs to better cope with both internal and external hazards and keep the plant operating safely, efficiently, and economically. This presentation focuses on increased battery capacity and evaluates the potential costs and benefits of deploying batteries with increased capacities at a generic boiling water reactor (BWR) NPP. A multicriterion benefit evaluation methodology is used for the cost-benefit analysis. Ten alternatives for extending battery capacity are developed, including eight alternatives to provide additional direct-current power and one alternative to provide additional alternating-current power. Potential benefits of reducing plant risk are quantified through incorporating the alternatives into loss-of-offsite-power scenarios of the generic BWR probabilistic risk assessment model. Potential costs of implementing the alternatives are qualitatively discussed and ranked. The alternatives are then compared based on their impacts on plant risk and economics.

99 GENERAL AND MISCELLANEOUS↗

A stable 15-member bacterial SynCom promotes Brachypodium growth under drought stress

Introduction: Rhizosphere microbiomes are known to drive soil nutrient cycling and influence plant fitness during adverse environmental conditions. Field-derived robust Synthetic Communities (SynComs) of microbes mimicking the diversity of rhizosphere microbiomes can greatly advance a deeper understanding of such processes. However, assembling stable, genetically tractable, reproducible, and scalable SynComs remains challenging. Methods: Here, we present a systematic approach using a combination of network analysis and cultivation-guided methods to construct a 15-member SynCom from the rhizobiome of Brachypodium distachyon. This SynCom incorporates diverse strains from five bacterial phyla. Genomic analysis of the individual strains was performed to reveal encoded plant growth-promoting traits, including genes for the synthesis of osmoprotectants (trehalose and betaine) and Na+/K+ transporters, and some predicted traits were validated by laboratory phenotypic assays. Results: The SynCom demonstrates strong stability both in vitro and in planta. Most strains encoded multiple plant growth-promoting functions, and several of these were confirmed experimentally. The presence of osmoprotectant and ion transporter genes likely contributed to the observed resilience of Brachypodium to drought stress, where plants amended with the SynCom recovered better than those without. We further observed preferential colonization of SynCom strains around root tips under stress, likely due to active interactions between plant root metabolites and bacteria. Discussion: Our results demonstrate that trait-informed construction of synthetic communities can yield stable, functionally diverse consortia that enhance plant resilience under drought. Preferential colonization near root tips points to active, localized plant-microbe signaling as a component of stress-responsive recruitment. This stable SynCom provides a scalable platform for probing mechanisms of plant-microbe interaction and for developing microbiome-based strategies to improve soil and crop performance in variable environments.

Yadav, Archana↗

Physics and technology considerations for the deuterium–tritium fuel cycle and conditions for tritium fuel self sufficiency

The tritium aspects of the DT fuel cycle embody some of the most challenging feasibility and attractiveness issues in the development of fusion systems. The review and analyses in this paper provide important information to understand and quantify these challenges and to define the phase space of plasma physics and fusion technology parameters and features that must guide a serious R&D in the world fusion program. We focus in particular on components, issues and R&D necessary to satisfy three 'principal requirements': (1) achieving tritium self-sufficiency within the fusion system, (2) providing a tritium inventory for the initial start-up of a fusion facility, and (3) managing the safety and biological hazards of tritium. A primary conclusion is that the physics and technology state-of-the-art will not enable DEMO and future power plants to satisfy these principal requirements. We quantify goals and define specific areas and ideas for physics and technology R&D to meet these requirements. A powerful fuel cycle dynamics model was developed to calculate time-dependent tritium inventories and flow rates in all parts and components of the fuel cycle for different ranges of parameters and physics and technology conditions. Dynamics modeling analyses show that the key parameters affecting tritium inventories, tritium start-up inventory, and tritium self-sufficiency are the tritium burn fraction in the plasma (f b ), fueling efficiency (η f ), processing time of plasma exhaust in the inner fuel cycle (t p ), reactor availability factor (AF), reserve time (tr) which determines the reserve tritium inventory needed in the storage system in order to keep the plant operational for time t r in case of any malfunction of any part of the tritium processing system, and the doubling time (t d ). Results show that η f f b > 2% and processing time of 1–4 h are required to achieve tritium self-sufficiency with reasonable confidence. For η f f b = 2% and processing time of 4 h, the tritium start-up inventory required for a 3 GW fusion reactor is ~11 kg, while it is <5 kg if η f f b = 5% and the processing time is 1 h. To achieve these stringent requirements, a serious R&D program in physics and technology is necessary. The EU-DEMO direct internal recycling concept that carries fuel directly from the plasma exhaust gas to the fueling systems without going through the isotope separation system reduces the overall processing time and tritium inventories and has positive effects on the required tritium breeding ratio (TBR R ). A significant finding is the strong dependence of tritium self-sufficiency on the reactor availability factor. Simulations show that tritium self-sufficiency is: impossible if AF < 10% for any η f f b , possible if AF > 30% and 1% ≤ η f f b ≤ 2%, and achievable with reasonable confidence if AF > 50% and η f f b > 2%. These results are of particular concern in light of the low availability factor predicted for the near-term plasma-based experimental facilities (e.g. FNSF, VNS, CTF), and can have repercussions on tritium economy in DEMO reactors as well, unless significant advancements in RAMI are made. There is a linear dependency between the tritium start-up inventory and the fusion power. The required tritium start-up inventory for a fusion facility of 100 MW fusion power is as small as 1 kg. Since fusion power plants will have large powers for better economics, it is important to maintain a 'reserve' tritium inventory in the tritium storage system to continue to fuel the plasma and avoid plant shutdown in case of malfunctions of some parts of the tritium processing lines. But our results show that a reserve time as short as 24 h leads to unacceptable reserve and start-up inventory requirements. Therefore, high reliability and fast maintainability of all components in the fuel cycle are necessary in order to avoid the need for storing reserve tritium inventory sufficient for continued fusion facility operation for more than a few hours. The physics aspects of plasma fueling, tritium burn fraction, and particle and power exhaust are highly interrelated and complex, and predictions for DEMO and power reactors are highly uncertain because of lack of experiments with burning plasma. Fueling by pellet injection on the high field side of tokamak has evolved to be the preferred method to fuel a burning plasma. Extrapolation from the DIII-D penetration scaling shows fueling efficiency expected in DEMO to be <25%, but such extrapolations are highly uncertain. The fueling efficiency of gas in a reactor relevant regime is expected to be extremely poor and not very useful for getting tritium into the core plasma efficiently. Gas fueling will nonetheless be useful for feedback control of the divertor operating parameters. Extensive modeling has been carried out to predict burn fraction, fueling requirements, and fueling efficiency for ITER, DEMO, and beyond. The fueling rate required to operate Q = 10 ITER plasmas in order to provide the required core fueling, helium exhaust and radiative divertor plasma conditions for acceptable divertor power loads was calculated. If this fueling is performed with a 50–50 DT mix, the tritium burn fraction in ITER would be ~0.36%, which is too low to satisfy the self-sufficiency conditions derived from the dynamics modeling for fusion reactors. Extrapolation to DEMO using this approach would also yield similarly low burn fraction. Extensive analysis presented shows that specific features of edge neutral dynamics in ITER and fusion reactors, which are different from present experiments, open possibilities for optimization of tritium fueling and thus to improve the burn fraction. Using only tritium in pellet fueling of the plasma core, and only deuterium for edge density, divertor power load and ELM control results in significant increase of the burn fraction to 1.8–3.6%. These estimates are performed with physics models whose results cannot be fully validated for ITER and DEMO plasma conditions since these cannot be achieved in present tokamak experiments. Thus, several uncertainties remain regarding particle transport and scenario requirements in ITER and DEMO. The safety standard requirements for protection of the public and release guidelines for tritium have been reviewed. General safety approaches including minimizing tritium inventories, reducing tritium permeation through materials, and decontaminating material for waste disposal have been suggested.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Plant Single-Cell Solutions for Energy and the Environment (Second Workshop Report)

Plants are important sources of energy and materials, and they collectively represent a critical component of Earth’s ecosystem. With increasing environmental stresses due to climate change and intensive agricultural practices, the need for resilient plants is greater than ever before. To secure plant resources for bioenergy, biomaterials, food, and ecosystem adaptation, a deeper understanding of the fundamental biology of plants at a cellular level is urgently needed. Plants contain a multitude of specialized cell types that compose tissues and organs. Pathogens often target specific cell types within plants, and the response of one cell to a particular stimulus is likely to be distinct from its neighbor because of underlying molecular and contextual differences. Understanding how these responses are distributed among cells, the main goal of single-cell approaches, will substantially enhance our ability to use targeted engineering for improving plant productivity and resilience. Furthermore, single-cell approaches are necessary to understand the interactions between plants and other ecosystem members such as fungi, bacteria, and archaea. Unlocking these gene-response mechanisms at a cellular level can improve our ability to adapt plants to environmental stresses, increasing their utility as feedstocks for biomaterials and bioenergy. Recent advances in high-throughput sequencing, mass spectrometry, microfluidics and miniaturization, artificial intelligence and machine learning, and bioinformatics have greatly improved our ability to detect and understand processes at a cellular level. In mammalian systems, single-cell transcriptomics has already led to many advances, such as newly identified cell types and cell-targeted treatment of diseases, and mass spectrometry-based single-cell proteomics has recently been demonstrated as a promising emerging technology. However, plant single-cell omics has lagged behind mammalian approaches due to the high cost of the technologies relative to available resources and to the innate biological features of plants, including the complexity of the cell wall and polyploidy. To better understand how single-cell methods could enable plant science, Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a workshop on April 29, 2021, that brought together a diverse group of leaders in plant and/or single-cell biology. Attendees represented federal research programs and domestic and international academic institutions. During the workshop, three presenters described the current state of research in both experimental and computational approaches. While the focus of the workshop was on factors preventing plant biology researchers from fully adopting single-cell methodologies, workshop participants agreed that most barriers could be overcome with focused, strategic investment and coordinated efforts among institutions leading to significant scientific discoveries that would be difficult to obtain using more conventional technologies.

59 BASIC BIOLOGICAL SCIENCES↗

The underappreciated importance of solar radiation in constraining spring phenology of temperate ecosystems in the Northern and Eastern United States

Spring phenology of temperate ecosystems is highly sensitive to climate change, generating various impacts on many important terrestrial surface biophysical processes. Although various prognostic models relying on environmental variables of temperature and photoperiod have been developed for spring phenology, comprehensive ecosystem-scale evaluations over large landscapes and long-time periods remain lacking. Further, environmental variables other than temperature and photoperiod might also importantly constrain spring phenology modelling but remain under-investigation. To address these issues, we leveraged around 20-years datasets of environmental variables (from Daymet and GLDAS products) and the spring phenology metric (i.e., the greenup date) respectively derived from MODIS and PhenoCams across 108 sites in the Northern and Eastern United States. We firstly cross-compared MODIS-derived greenup date with official PhenoCams product with high accuracy (R 2 = 0.70). Then, we evaluated the three prognostic models (i.e., Growing Degree Date (GDD), Sequential (SEQ) and optimality-based (OPT)) with MODIS-derived spring phenology, assessed the model residuals and their associations with soil moisture, rainfall, and solar radiation, and revised the two photoperiod-relevant models (SEQ, OPT) by replacing the daylength variable with solar radiation, which was found to contribute the most to model residuals. We found that 1) all models demonstrated good capability in characterizing spring phenology, with OPT performing the best (RMSE = 8.04 ± 5.05 days), followed by SEQ (RMSE = 10.57 ± 7.77 days) and GDD (RMSE = 10.84 ± 8.42 days), 2) all models displayed high model residuals showing tight correlation with solar radiation (r = 0.45–0.75), and 3) the revised models that included solar radiation significantly performed better with an RMSE reduction by 22.08%. Such results are likely because solar radiation better constrains early growing season plant photosynthesis than photoperiod, supporting the hypothesis of spring phenology as an adaptive strategy to maximize photosynthetic carbon gain (approximated by solar radiation) while minimizing frost damage risk (captured by temperature). Collectively, our study here reveals the underappreciated importance of solar radiation in constraining spring phenology of temperate ecosystems, and suggests ways to improve spring phenology modelling and other phenology-related ecological processes.

54 ENVIRONMENTAL SCIENCES↗

Non-destructive spatial analysis of phosphatase activity and total protein distribution in the rhizosphere using a root blotting method

Phosphorus (P) is an essential macronutrient for plant growth, but bioavailable P in soils is often limited due to immobilization resulting from pH and geochemical interactions. Understanding the dynamics of P in soils and elucidating the mechanisms by which plants access P from their environment are critical to evaluating productivity, particularly in nutrient poor environments. Phosphorus from organic matter can act as a major source of P for organisms in soil systems. Phosphatases, enzymes that liberate inorganic P from organic sources, are produced by both plants and microbes and are considered one of the most active classes of enzymes in soil. In this work we developed a root blotting method to spatially image phosphatase activity in the rhizosphere. Proteins from the rhizosphere are transferred to a nitrocellulose membrane while retaining their enzymatic activity and two-dimensional spatial distribution. Subsequent application of a fluorogenic phosphatase indicator, DDAO phosphate, enables visualization of the distribution of phosphatase activity in the sample. The proteins can then be fixed to the membrane and treated with a SYPRO® Ruby gel stain, a fluorescent total protein stain, allowing for visualization of total protein distribution. Taken together, the images of phosphatase activity and total protein localization can be mapped back to the root architecture and provide insight into factors affecting the spatial distribution of enzymatic activity and protein accumulation in the rhizosphere. Notably, this method can be applied to plants growing in rhizoboxes containing soil or soilless growth mixtures (e.g., sand or various potting mixes) and, because of the non-destructive nature of this approach, be performed over time to track changes. We anticipate that this fluorescent indicator imaging technique on root blots can be used in diverse plant-microbe-soil systems to better understand the role of phosphatases in P acquisition and soil P cycling.

59 BASIC BIOLOGICAL SCIENCES↗

Opportunities and Challenges for Industrial Water Treatment and Reuse

As the impact of water scarcity in the United States (U.S.) continues to grow through the 21st century, it is critical to develop strategies to reduce water use and improve the security of water resources. One such strategy is to diversify the sources from which water is supplied. Industrial withdrawals represent the fourth largest category of U.S. water use, the majority of which is sourced from fresh surface and groundwater. In this study, we critically explore the potential of industrial wastewater to serve as an alternative water resource through direct treatment and reuse. We begin by reviewing the state of the art of water use, treatment, and reuse across six representative industries: food and beverages, primary metals, pulp and paper, petroleum refining, chemicals, and data centers and campuses, highlighting key challenges and opportunities toward the expansion of reuse. We then employ a technoeconomic assessment of water treatment processes to analyze the capital investment, operating and maintenance costs, levelized cost of water, and electricity consumption of three specific industrial plants as case studies to better understand where research can promote impactful innovation. Finally, drawing together the results of our literature review and technoeconomic analyses, we provide a broad outlook on the future of industrial water reuse and discuss strategies for its expansion.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Thermal acclimation of plant photosynthesis and autotrophic respiration in a northern peatland

Peatlands contain one-third of global soil carbon (C), but the responses of peatland ecosystems to long-term warming are not well understood. Here, we pursue an emergent understanding of warming effects on ecosystem C fluxes at peatlands by constraining a process-oriented model, the terrestrial ECOsystem model, with observational data from a long-term warming experiment at the Spruce and Peatland Responses Under Changing Environments site. Model-based assessments show that ecosystem-level photosynthesis and autotrophic respiration exhibited significant thermal acclimation, with temperature sensitivities being linearly decreased with warming. Using the thermal-acclimated parameter values, simulated gross primary production, net primary production, and plant autotrophic respiration (R a ), were all lower than those simulated with non-thermal acclimated parameter values. In contrast, ecosystem respiration simulated with thermal acclimated parameter values was higher than that simulated with non-thermal acclimated parameter values. Net ecosystem CO 2 exchange was much higher after constraining model parameters with observational data from the warming treatments, releasing C at a rate of 28.3 g C m -2 yr -1 °C -1 . Our data-model integration study suggests that peatlands are likely to release more C than previously estimated. Earth system models may overestimate C uptake by peatlands under warming if physiological thermal acclimation of plants is not incorporated. Thus, it is critical to consider the long-term physiological thermal acclimation of plants in the models to better predict global C dynamics under future climate and their feedback to climate change.

54 ENVIRONMENTAL SCIENCES↗

Frontiers and opportunities in bioenergy crop microbiome research networks

Researchers from across the four U.S. Department of Energy Bioenergy Research Centers engaged in a microbiome workshop that focused on identifying challenges and collaboration opportunities to better understand bioenergy-relevant plant–microbe interactions. The virtual workshop included hands-on educational sessions and a keynote address on current best practices in microbiome science and community microbiome standards, as well as breakout sessions aimed at identifying microbiome-related data and measurements that should be prioritized, opportunities for and barriers to integrating plant metabolites to microbiome research, and strategies for more effectively integrating microbiome data and processes into existing models. Based on participant discussion, key findings of the workshop were the need to prioritize scaling data sharing across BRCs and the broader research community and securing collaborative infrastructure in the areas of microbiome-ecosystem modeling and molecular plant-microbe interactions. This workshop review highlights additional main findings from this event, to encourage cross-site and more holistic meta-analyses while promoting wide scientific community engagement across plant microbiome sciences.

09 BIOMASS FUELS↗

Techno-Economic Analysis for GTI's Compact Hydrogen Generator

A technoeconomic analysis of the compact hydrogen generator compared to a traditional steam methane reformer (SMR) was performed for both processes with and without carbon capture. The project goal for the technoeconomic analysis was to demonstrate a minimum of 20% lower CAPEX and 15% lower levelized cost of hydrogen compared to SMR with and without carbon capture. GTI obtained baseline capital and costs for the SMR with and without and methodology to calculate the levelized cost of hydrogen from an IEAGHG Technical Report: 2017-02 Techno-Economic Evaluation of SMR Based Standalone (Merchant) Hydrogen Plant with CCS. This methodology was then applied to GTI’s compact hydrogen generator using direct material costs previously obtained from a reputable engineering procurement and construction company, CB&I Howe-Baker. The analysis was performed for plants producing 90MMSCFD (million standard cubic feed per day) of hydrogen. Direct material costs were converted to total installed costs and total capital requirements using the same multiplying factors for both processes. We have found that the direct materials cost of the compact hydrogen generator is less than half the direct materials cost required for SMR without capture, and about one quarter the direct materials cost of SMR with carbon capture. This low materials cost translates into a significant CAPEX savings and lower levelized cost of hydrogen that exceed the goals of the techno-economic assessment. We have found that the CHG has a 43% lower installed cost and capital requirement compared to SMR without capture, that results in a levelized cost of hydrogen that is 19% lower than SMR. When 90% CO2 capture is added to the plants, the advantages is even better. The CHG has a 51% lower installed and capital requirement compared to SMR with capture, resulting in a 28% lower levelized cost of hydrogen. A sensitivity analysis was performed and showed natural gas feedstock cost and discount rate to be the main contributors to hydrogen price sensitivity. Given these significant cost advantages, GTI is encouraged to continue to develop the technology and market the economic advantages as well as the efficiency gains and ability to inherently capture CO2.

08 HYDROGEN↗

Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain

Lipid droplets (LDs) are neutral-lipid-containing organelles found in all kingdoms of life and are coated with proteins that carry out a vast array of functions. Compared to mammals and yeast, relatively few LD proteins have been identified in plants, particularly those associated with LDs in vegetative (non-seed) cell types. Thus, to better understand the cellular roles of LDs in plants, a more comprehensive inventory and characterization of LD proteins is required. Here, we performed a proteomics analysis of LDs isolated from drought-stressed Arabidopsis leaves and identified EARLY RESPONSIVE TO DEHYDRATION 7 (ERD7) as a putative LD protein. mCherry-tagged ERD7 localized to both LDs and the cytosol when ectopically expressed in plant cells, and the protein’s C-terminal senescence domain (SD) was both necessary and sufficient for LD targeting. Phylogenetic analysis revealed that ERD7 belongs to a six-member family in Arabidopsis that, along with homologs in other plant species, is separated into two distinct subfamilies. Notably, the SDs of proteins from each subfamily conferred targeting to either LDs or mitochondria. Further, the SD from the ERD7 homolog in humans, spartin, localized to LDs in plant cells, similar to its localization in mammals; although, in mammalian cells, spartin also conditionally localizes to other subcellular compartments, including mitochondria. Disruption of ERD7 gene expression in Arabidopsis revealed no obvious changes in LD numbers or morphology under normal growth conditions, although this does not preclude a role for ERD7 in stress-induced LD dynamics. Consistent with this possibility, a yeast two-hybrid screen using ERD7 as bait identified numerous proteins involved in stress responses, including some that have been identified in other LD proteomes. Collectively, these observations provide new insight to ERD7 and the SD-containing family of proteins in plants and suggest that ERD7 may be involved in functional aspects of plant stress response that also include localization to the LD surface.

54 ENVIRONMENTAL SCIENCES↗

Platform for efficient large-scale storage and analysis of multi-omics data in plant and microbial systems (Final Technical Report)

Genomic variation at the sequence level fundamentally affects the phenotypic state of all organisms at all stages of development, while dynamic processes such as changes in the epigenome (e.g. DNA methylation state) and transcriptome regulate the specific phenotype expressed at any given state of development based upon that genomic variation. In plants, DNA methylation is a particularly important mechanism for both regulating transcriptomic expression and for management of genomic variations that could be deleterious to the organism due to the presence of active retrotransposons in plant genomes. While DNA methylation is heritable, it is also dynamic through a given plant’s development and life cycle, particularly during the development from seed to mature specimen suggesting variations in DNA methylation could be critical regulators of biologically and commercially important phenotypes such as time to flowering; in addition, plant DNA methylation is more complex than that of animals, with methylation of CHG and CHH trinucleotides evident in addition to the better-known CG methylation. The complexity of plant DNA methylation and its interplay with genomic sequence variation, transcriptomics and other epigenomic factors demand a storage and analysis framework that can cope with the complexity both within a single specimen and with analyses that span many individuals and even many species, such as attempts to extend models from model organisms to commercially relevant species. In addition to complexity, the rapid development and proliferation of sequencing technology has led to an explosion of data volume that conventional storage and analysis solutions will likely be unable to cope with in the long run. We proposed to study these with suitable distributed storage and computation and therefore for the application of cloud computing to biological analyses; integrate with existing data sources and compatible with virtually any interface use case, from fully automated shell scripts to notebooks and do all these at scale in this STTR grant.

60 APPLIED LIFE SCIENCES↗