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At least 181 records · Page 10

Big-data Efficient and Automated Science Transfer (BEAST): An Open-Source Software Architecture for Arc Jet Data Management, Modeling, and Automation

Big-data Efficient and Automated Science Transfer (BEAST) is a facility data management application developed for the NASA Ames arc jet facilities. The current decentralized data management practices limit statistical tracking, synchronization between video/time series, search capability, data throughput, and data processing speed/efficiency. Consequently, BEAST was developed to provide a new data infrastructure with streamlined data collection, processing, transfer, and analysis. This new framework also seeks to implement the FAIR principles of data stewardship: Findable, Accessible, Interoperable, and Reusable. The BEAST framework is based on a combination of the Python Django web framework and the Python data stack to provide a monolithic, open-source platform for data management, automation, and machine learning. This architecture was chosen for maintainability and scalability for a small, in-house development team. This paper will describe the application framework, deployment, and discuss the benefits and future plans for the system.

Data management

MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment

DNA/RNA-stable isotope probing (SIP) is a powerful tool to link in situ microbial activity to sequencing data. Every SIP dataset captures distinct information about microbial community metabolism, process rates, and population dynamics, offering valuable insights for a wide range of research questions. Data reuse maximizes the information derived from the labor and resource-intensive SIP approaches. Yet, a review of publicly available SIP sequencing metadata showed that critical information necessary for reproducibility and reuse was often missing. Here, we outline the Minimum Information for any Stable Isotope Probing Sequence (MISIP) according to the Minimum Information for any (x) Sequence (MIxS) framework and include examples of MISIP reporting for common SIP experiments. Our objectives are to expand the capacity of MIxS to accommodate SIP-specific metadata and guide SIP users in metadata collection when planning and reporting an experiment. The MISIP standard requires 5 metadata fields—isotope, isotopolog, isotopolog label, labeling approach, and gradient position—and recommends several fields that represent best practices in acquiring and reporting SIP sequencing data (e.g., gradient density and nucleic acid amount). The standard is intended to be used in concert with other MIxS checklists to comprehensively describe the origin of sequence data, such as for marker genes (MISIP-MIMARKS) or metagenomes (MISIP-MIMS), in combination with metadata required by an environmental extension (e.g., soil). The adoption of the proposed data standard will improve the reuse of any sequence derived from a SIP experiment and, by extension, deepen understanding of in situ biogeochemical processes and microbial ecology.

Simpson, Abigayle

When more data hurts: Optimizing data coverage while mitigating diversity-induced underfitting in an ultrafast machine-learned potential

Machine-learned interatomic potentials (MLIPs) are becoming an essential tool in materials modeling. However, optimizing the generation of training data used to parametrize the MLIPs remains a significant challenge. This is because MLIPs can fail when encountering local environments too different from those present in the training data. The difficulty of determining a priori the environments that will be encountered during molecular dynamics simulation necessitates diverse, high-quality training data. Here, this study investigates how training data diversity affects the performance of MLIPs using the Ultra-Fast force field (UF 3 ) to model amorphous silicon nitride. We employ expert and autonomously generated data to create the training data and fit four force field variants to subsets of the data. Our findings reveal a critical balance in training data diversity: insufficient diversity hinders generalization, while excessive diversity can exceed the MLIP's learning capacity, reducing simulation accuracy. Specifically, we found that the UF 3 variant trained on a subset of the training data, in which nitrogen-rich structures were removed, offered vastly better prediction and simulation accuracy than any other variant. By comparing these UF 3 variants, we highlight the nuanced requirements for creating accurate MLIPs, emphasizing the importance of application-specific training data to achieve optimal performance in modeling complex material behaviors.

ab initio molecular dynamics

Data for "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population"

This dataset contains all data and supplementary materials from "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population". 1. The dataset S1 table contains the raw phenotypic data collected during the experiment. 2. The dataset S2 table contains the LSmean values for the 24 traits studied. 3. The dataset S3 table contains the TASSEL GBSv2 map, marker information, and genotype data used for mapping. 4. The dataset S4 table contains information on candidate genes found in each of the QTL intervals. 5. The dataset S5 table contains the GO annotations and KEGG enrichment analyses for those candidate genes. 6. The dataset S6 table contains information on the sequences used to classify AP2 ERF transcription factors. 7. The dataset S7 table contains information on AP2 ERF orthologs between Miscanthus and rice based on synteny. 8. Supplementary file 1 contains the ANOVA results using the raw phenotypic data collected from protocol "A". 9. Supplementary file 2 contains the ANOVA results using the raw phenotypic data collected from protocol "B". 10. Supplementary file 3 contains notes on the comparison of SNP calling methods. 11. Supplementary file 4 is a script for analyzing candidate genes found in QTL intervals.

Miscanthus, flood, partial submergence, complete s

AOIPS data base management systems support for GARP data sets

A data base management system is identified, developed to provide flexible access to data sets produced by GARP during its data systems tests. The content and coverage of the data base are defined and a computer-aided, interactive information storage and retrieval system, implemented to facilitate access to user specified data subsets, is described. The computer programs developed to provide the capability were implemented on the highly interactive, minicomputer-based AOIPS and are referred to as the data retrieval system (DRS). Implemented as a user interactive but menu guided system, the DRS permits users to inventory the data tape library and create duplicate or subset data sets based on a user selected window defined by time and latitude/longitude boundaries. The DRS permits users to select, display, or produce formatted hard copy of individual data items contained within the data records.

Gary, J. P.

An improvement in land cover classification achieved by merging microwave data with Landsat multispectral scanner data

The improvement in land cover classification achieved by merging microwave data with Landsat MSS data is examined. To produce a merged data set for analysis and comparison, a registration procedure by which a set of Seasat SAR digital data was merged with the MSS data is described. The Landsat MSS data and the merged Landsat/Seasat data sets were processed using conventional multichannel spectral pattern recognition techniques. An analysis of the classified data sets indicates that while Landsat data delineate different forest types (i.e., deciduous/coniferous) and allow some species separation, SAR data provide additional information related to plant canopy configuration and vegetation density as associated with varying water regimes, and therefore allow for further subdivision in the classification of forested wetlands of the coastal region of the southern United States.

Wu, S. T.

Planning for the utilization of the PCDS in studying the interaction of clouds (ISCCP-C data) and the Earth radiation budget (ERBE data)

The Pilot Climate Data System (PCDS) affords an opportunity to analyze data from different but highly complementary data sets. Two of these highly complementary data sets supported by the PCDS are the International Satellite Cloud Climatology Project (ISCCP) and the Earth Radiation Budget Experiment (ERBE). Both data set sponsors are aware of the utility of one data set to the other, and both projects utilize gridded data on a 2.5 deg by 2.5 deg grid. The ISCCP data have been collected since July 1983, and the NOAA-9 data for ERBE have been collected for more than a year. Therefore, there is a good chance to use these temporally overlapping data sets to investigate hypothesized relationships. Changes in cloudiness affect both cloud albedo feedback (shortwave) and the greenhouse effect (longwave). The relative importance of the effects of clouds on albedo versus outgoing longwave radiation (OLR) in determining the radiation balance has long been a matter of controversy. Now, however, changes in cloud amount as observed by the ISCCPO can be correlated to corresponding changes in the albedo and changes in the OLR from ERBE. Monthly means can be utilized in all instances.

Jacobowitz, H.

Data space volumes and classification optimization of SPOT and Landsat TM data

In order to compare the data space volume of SPOT XS and Landsat TM images, three data sets, i.e., a wetlands/agricultural data set, an agricultural data set, and a forest data set, are examined. The comparisons are made for the same geographic area. The data space volumes for Landsat TM (2, 3, and 4) are found to be 70 to 100 percent larger than the volumes for the SPOT XS images. It is suggested that the additional midinfrared bands contribute to the difference in data space volumes between Landsat TM and SPOT XS. The data space volumes for Landsat TM bands 3, 4, and 5 are more than an order of magnitude greater than the volumes for the three band SPOT XS data sets. The volumes of the six-band Landsat TM images are four orders of magnitude greater than the SPOT XS. The analysis of the data space volumes is used to optimize the computation time and minimize the storage requirements of a maximum-likelihood classification based on a look-up table.

Ahearn, Sean C.

Earth observing system. Output data products and input requirements, version 2.0. Volume 3: Algorithm summary tables and non-EOS data products

Volume 3 assists Earth Observing System (EOS) investigators in locating required non-EOS data products by identifying their non-EOS input requirements and providing the information on data sets available at various Distributed Active Archive Centers (DAAC's), including those from Pathfinder Activities and Earth Probes. Volume 3 is intended to complement, not to duplicate, the the EOSDIS Science Data Plan (SDP) by providing detailed data set information which was not presented in the SDP. Section 9 of this volume discusses the algorithm summary tables containing information on retrieval algorithms, expected outputs and required input data. Section 10 describes the non-EOS input requirements of instrument teams and IDS investigators. Also described are the current and future data holdings of the original seven DAACS and data products planned from the future missions and projects including Earth Probes and Pathfinder Activities. Section 11 describes source of information used in compiling data set information presented in this volume. A list of data set attributes used to describe various data sets is presented in section 12 along with their descriptions. Finally, Section 13 presents the SPSO's future plan to improve this report .

Lu, Yun-Chi

Calibration of the NOAA 11 solar backscatter ultraviolet (SBUV/2) ozone data set from 1989 to 1993 using in-flight calibration data and SSBUV

Total ozone and ozone profiles are currently being measured by solar backscatter ultraviolet (SBUV/2) instruments onboard NOAA polar orbiting spacecraft using the backscattered ultraviolet technique. The NOAA 11 SBUV/2 operational data set, reprocessed from January 1989 to May 1993 (version 6), includes an updated algorithm and revised prelaunch and postlaunch calibrations of the geometrical albedo observations used to derive ozone values. The postlaunch calibration revisions remove time dependent errors in the ozone amounts due to instrument drift, while the revised prelaunch calibration corrects the absolute value of retrieved ozone. The prelaunch corrections are a result of calibration checks from in-orbit comparisons of ultraviolet geometric albedos measured by shuttle SBUV (SSBUV) and the NOAA 11 SBUV/2. Geometric albedo comparison data are further corrected using a radiative transfer code to account for the small difference in observing conditions between the two spacecraft. The postlaunch corrections rely on in-flight calibration and solar irradiance data to account for time dependent changes in instrument gain, thermal response, and instrument diffuser degradation over time. Comparison of data from three SSBUV flights, which occurred about one year apart, with concurrent SBUV/2 data provided an independent check of the time dependent change derived from the in-flight calibration data. Time independent corrections result in an increase of about 1% for total ozone, 5% for ozone at 1 mbar, and near 0% at 15 mbar. The time dependent corrections amount to an increase of 2% for total ozone, 10% for ozone near 1 mbar, and 3% at 15 mbar at the end of the current record in May 1993. Recent laboratory studies indicate that the absolute radiance calibrations may still be in error by a few percent which results in ozone profile values that are too low. The SBUV/2 total and ozone profile data are compared to the Nimbus SBUV data during the period when the data overlapped. Total ozone values agree to about 1%, while ozone profile differences range from -4% to +6%, depending on latitude and altitude, relative to SBUV. These differences are not statistically significant given the uncertainties of the two data sets.

Hilsenrath, E.

Application of Tracking and Data Relay Satellite (TDRS) Differenced One-Way Doppler (DOWD) Tracking Data for Orbit Determination and Station Acquisition Support of User Spacecraft Without TDRS Compatible Transponders

Many spacecraft are launched today with only an omni-directional (omni) antenna and do not have an onboard Tracking and Data Relay Satellite (TDRS) transponder that is capable of coherently returning a carrier signal through TDRS. Therefore, other means of tracking need to be explored and used to adequately acquire the spacecraft. Differenced One-Way Doppler (DOWD) tracking data are very useful in eliminating the problems associated with the instability of the onboard oscillators when using strictly one-way Doppler data. This paper investigates the TDRS DOWD tracking data received by the Goddard Space Flight Center (GSFC) Flight Dynamics Facility (FDF) during the launch and early orbit phases for the the Interplanetary Physics Laboratory (WIND) and the National Oceanographic and Atmospheric Administration (NOAA)-J missions. In particular FDF personnel performed an investigation of the data residuals and made an assessment of the acquisition capabilities of DOWD-based solutions. Comparisons of DOWD solutions with existing data types were performed and analyzed in this study. The evaluation also includes atmospheric editing of the DOWD data and a study of the feasibility of solving for Doppler biases in an attempt to minimize error. Furthermore, by comparing the results from WIND and NOAA-J, an attempt is made to show the limitations involved in using DOWD data for the two different mission profiles. The techniques discussed in this paper benefit the launches of spacecraft that do not have TDRS transponders on board, particularly those launched into a low Earth orbit. The use of DOWD data is a valuable asset to missions which do not have a stable local oscillator to enable high-quality solutions from the one-way/return-link Doppler tracking data.

Olszewski, A. D., Jr.

Data Information for Global Change Studies: NASA's Distributed Active Archive Centers and Cooperating Data Centers

The Earth Observing System (EOS) is an integral part of the National Aeronautics and Space Administration's (NASA's) Earth Science Enterprise (ESE). ESE is a long-term global change research program designed to improve our understanding of the Earth's interrelated processes involving the atmosphere, oceans, land surfaces, and polar regions. Data from EOS instruments and other Earth science measurement systems are useful in understanding the causes and processes of global climate change and the consequences of human activities. The EOS Data and Information System (EOSDIS) provides a structure for data management and user services for products derived from EOS satellite instruments and other NASA Earth science data. Within the EOSDIS framework, the Distributed Active Archive Centers (DAACs) have been established to provide expertise in one or more Earth science disciplines. The DAACs and cooperating data centers provide data and information services to support the global change research community. Much of the development of the DAACs has been in anticipation of the enormous amount of data expected from EOS instruments to be launched within the next two decades. Terra, the EOS flagship launched in December 1999, is the first of a series of EOS satellites to carry several instruments with multispectral capabilities. Some data products from these instruments are now available from several of the DAACs. These and other data products can be ordered through the EOS Data Gateway (EDG) and DAAC-specific online ordering systems.

Source record

Enhancing the IGS Data and Products Infrastructure: A Data Center Perspective

The Data Transfer and Data Centers session will present papers on current data center activities as well as various topics geared towards enhancing the availability and acquisition of International Global Positions System Service (IGS) data and products. These topics include: strategies for reducing data file latency at IGS Data Centers, standardization of data file replacement notification methods, improving the efficiency of data file transfer among IGS Data Centers, and defining a network topology for GPS data files for use in applications.

Scharber, Michael

Circular Data Images for Directional Data

Directional data includes vectors, points on a unit sphere, axis orientation, angular direction, and circular or periodic data. The theoretical statistics for circular data (random points on a unit circle) or spherical data (random points on a unit sphere) are a recent development. An overview of existing graphical methods for the display of directional data is given. Cross-over occurs when periodic data are measured on a scale for the measurement of linear variables. For example, if angle is represented by a linear color gradient changing uniformly from dark blue at -180 degrees to bright red at +180 degrees, the color image will be discontinuous at +180 degrees and -180 degrees, which are the same location. The resultant color would depend on the direction of approach to the cross-over point. A new graphical method for imaging directional data is described, which affords high resolution without color discontinuity from "cross-over". It is called the circular data image. The circular data image uses a circular color scale in which colors repeat periodically. Some examples of the circular data image include direction of earth winds on a global scale, rocket motor internal flow, earth global magnetic field direction, and rocket motor nozzle vector direction vs. time.

Morpet, William J.

New and Improved GLDAS Data Sets and Data Services at NASA GES DISC

The goal of a Land Data Assimilation System (LDAS) is to ingest satellite- and ground-based observational data products, using advanced land surface modeling and data assimilation techniques, in order to generate optimal fields of land surface states and fluxes data and, thereby, facilitate hydrology and climate modeling, research, and forecast. With the motivation of creating more climatologically consistent data sets, NASA GSFC's Hydrological Sciences Laboratory has generated more than 60 years (Jan. 1948-- Dec. 2008) of Global LDAS Version 2 (GLDAS-2) data, by using the Princeton Forcing Data Set and upgraded versions of Land Surface Models (LSMs). GLDAS data and data services are provided at NASA GES DISC Hydrology Data and Information Services Center (HDISC), in collaboration with HSL and LDAS.

Rui, Hualan

Earth Science Data Analysis in the Era of Big Data

Anyone with even a cursory interest in information technology cannot help but recognize that "Big Data" is one of the most fashionable catchphrases of late. From accurate voice and facial recognition, language translation, and airfare prediction and comparison, to monitoring the real-time spread of flu, Big Data techniques have been applied to many seemingly intractable problems with spectacular successes. They appear to be a rewarding way to approach many currently unsolved problems. Few fields of research can claim a longer history with problems involving voluminous data than Earth science. The problems we are facing today with our Earth's future are more complex and carry potentially graver consequences than the examples given above. How has our climate changed? Beside natural variations, what is causing these changes? What are the processes involved and through what mechanisms are these connected? How will they impact life as we know it? In attempts to answer these questions, we have resorted to observations and numerical simulations with ever-finer resolutions, which continue to feed the "data deluge." Plausibly, many Earth scientists are wondering: How will Big Data technologies benefit Earth science research? As an example from the global water cycle, one subdomain among many in Earth science, how would these technologies accelerate the analysis of decades of global precipitation to ascertain the changes in its characteristics, to validate these changes in predictive climate models, and to infer the implications of these changes to ecosystems, economies, and public health? Earth science researchers need a viable way to harness the power of Big Data technologies to analyze large volumes and varieties of data with velocity and veracity. Beyond providing speedy data analysis capabilities, Big Data technologies can also play a crucial, albeit indirect, role in boosting scientific productivity by facilitating effective collaboration within an analysis environment. To illustrate the effects of combining a Big Data technology with an effective means of collaboration, we relate the (fictitious) experience of an early-career Earth science researcher a few years beyond the present, interlaced and contrasted with reminiscences of its recent past (i.e., the present).

Kuo, K.-S.

Digital Image Correlation Data Processing and Analysis Techniques to Enhance Test Data Assessment and Improve Structural Simulations

The NASA Shell Buckling Knockdown Factor Project (SBKF) was established in 2007 by the NASA Engineering and Safety Center (NESC) with the primary goal to develop new analysis-based buckling design factors (a.k.a. knockdown factors) and high-fidelity buckling simulations for selected launch-vehicle-like cylindrical shell structures. A series of tests are being conducted on large-scale metallic and composite cylindrical shells in order to provide validation data for these new factors and simulations. However, the validation of these new factors and simulations is quite demanding and requires test data that is commensurate with their fidelity. Traditional instrumentation, such as linear variable displacement transducers (LVDTs) and electrical-resistance strain gages serve a critical role in providing accurate displacement and strain measurements in these tests, but only allow for data to be recorded at a select number of point locations and are not sufficient to provide all the necessary validation data. Advanced measurement technologies can be used effectively to complement traditional instrumentation and gather additional data required to validate these structural simulations. In particular, three-dimensional digital image correlation (DIC) was implemented during SBKF cylinder testing to characterize the full-field displacement and strain behavior. Commercially available VIC-3DTM software and user-written data processing scripts were used to generate valuable data and insight into the complex buckling response of the cylinders that otherwise would be impossible to gather using traditional instrumentation. In addition, the measured data from DIC was used to verify measured test data obtained from other instrumentation, enhance test and analysis correlation, and help identify the root cause of anomalous test results that may have gone unexplained if only traditional instrumentation was used. Selected test results that demonstrate the use of DIC on the SBKF cylinders are presented and a portion of the data processing methods are described.

Gardner, Nathaniel W.

What is LAADS DAAC? How to Download Data from NASA's Source for Cloud and Aerosol Data

The Level-1 and Atmosphere Archive Distribution System (LAADS) Distributed Active Archive Center (DAAC) primarily archives and distributes data on clouds and aerosols in Earth’s atmosphere in addition to providing Level 0 and 1 Moderate Imaging Radiometer Suite (MODIS), Visible Infrared Imaging Radiometer Suite (VIIRS) and airborne data as well as data from the European Space Agency’s Sea and Land Surface Temperature Radiometer (SLSTR) and the Ocean and Land Colour Instrument (OLCI). Secondarily, LAADS DAAC serves as a backup source for MODIS and VIIRS land products. As one of twelve DAACS supported by NASA’s Earth Science Data and Information System (ESDIS), LAADS DAAC provides a gateway to data through multiple tools. The newest, View Data, allows users to preview data sets before downloading or applying any post-processing transformations. Learn about how to access LAADS DAAC data, get up-to-date information about LAADS DAAC's migration to hosting data in the cloud, and discover how to use the View Data tool.

Tassia Owen