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At least 181 records · Page 10

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DOE OSTI2016

tRNA modification profiles of the fast-proliferating cancer cells

Despite the recent progress in RNA modification study, a comprehensive modification profile is still lacking for mammalian cells. Using a quantitative HPLC/MS/MS assay, we present here a study where RNA modifications are examined in term of the major RNA species. With paired slow- and fast-proliferating cell lines, distinct RNA modification profiles are first revealed for diverse RNA species. Compared to mRNAs, increased ribose and nucleobase modifications are shown for the highly-structured tRNAs and rRNAs, lending support to their contribution to the formation of high-order structures. This study also reveals a dynamic tRNA modification profile in the fast-proliferating cells. In addition to cultured cells, this unique tRNA profile has been further confirmed with endometrial cancers and their adjacent normal tissues. Taken together, the results indicate that tRNA is a actively regulated RNA species in the fast-proliferating cancer cells, and suggest that they may play a more active role in biological process than expected. -- Highlights: •RNA modifications were first examined in term of the major RNA species. •A dynamic tRNA modifications was characterized for the fast-proliferating cells. •The unique tRNA profile was confirmed with endometrial cancers and their adjacent normal tissues. •tRNA was predicted as an actively regulated RNA species in the fast-proliferating cancer cells.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2014

Influence of spin-orbit effects on structures and dielectric properties of neutral lead clusters

Combining molecular beam electric deflection experiments and global optimization techniques has proven to be a powerful tool for resolving equilibrium structures of neutral metal and semiconductor clusters. Herein, we present electric molecular beam deflection experiments on Pb{sub N} (N = 7–18) clusters. Promising structures are generated using the unbiased Birmingham Cluster Genetic Algorithm approach based on density functional theory. The structures are further relaxed within the framework of two-component density functional theory taking scalar relativistic and spin orbit effects into account. Quantum chemical results are used to model electric molecular beam deflection profiles based on molecular dynamics calculations. Comparison of measured and simulated beam profiles allows the assignment of equilibrium structures for the most cluster sizes in the examined range for the first time. Neutral lead clusters adopt mainly spherical geometries and resemble the structures of lead cluster cations apart from Pb{sub 10}. Their growth pattern deviates strongly from the one observed for tin and germanium clusters.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

SIMS CHARACTERIZATION OF NITROGEN DOPING OF LCLS-II-HE PRODUCTION CAVITIES

The thermal diffusion of nitrogen into the surface of niobium has been shown to yield superior low-loss SRF performance. An effective solution was identified and promptly employed in the production of cryomodules for LCLS-II. With added experience and R&D, a modified process was chosen for use in the upgrade for LCLS-II-HE. Largely motivated by this circumstance, supporting research has significantly refined the technique for making calibrated secondary ion mass spectrometry (SIMS) measurements of the N concentration depth profiles produced by production processes. Standardized reference samples were included with four HE production cavities in their N-doping furnace runs. We report the calibrated dynamic SIMS depth profiles of N, C, and O for these samples, together with the cryogenic acceptance test performance of the associated cavities. Interpretation and comparison with similar samples acquired in other furnaces highlights the importance of intentional process quality control of furnace conditions.

Reece, Charles↗

DOE OSTI2023

SIMS CHARACTERIZATION OF NITROGEN DOPING OF LCLS-II-HE PRODUCTION CAVITIES

Reece, Charles↗

DOE OSTI2013

A direct dynamical measurement of the Milky Way's disk surface density profile, disk scale length, and dark matter profile at 4 kpc ≲ R ≲ 9 kpc

We present and apply rigorous dynamical modeling with which we infer unprecedented constraints on the stellar and dark matter mass distribution within our Milky Way (MW), based on large sets of phase-space data on individual stars. Specifically, we model the dynamics of 16,269 G-type dwarfs from SEGUE, which sample 5 kpc < R{sub GC} < 12 kpc and 0.3 kpc ≲ |Z| ≲ 3 kpc. We independently fit a parameterized MW potential and a three-integral, action-based distribution function (DF) to the phase-space data of 43 separate abundance-selected sub-populations (MAPs), accounting for the complex selection effects affecting the data. We robustly measure the total surface density within 1.1 kpc of the mid-plane to 5% over 4.5 kpc < R{sub GC} < 9 kpc. Using metal-poor MAPs with small radial scale lengths as dynamical tracers probes 4.5 kpc ≲ R{sub GC} ≲ 7 kpc, while MAPs with longer radial scale lengths sample 7 kpc ≲ R{sub GC} ≲ 9 kpc. We measure the mass-weighted Galactic disk scale length to be R{sub d} = 2.15 ± 0.14 kpc, in agreement with the photometrically inferred spatial distribution of stellar mass. We thereby measure dynamically the mass of the Galactic stellar disk to unprecedented accuracy: M {sub *} = 4.6 ± 0.3 + 3.0 (R {sub 0}/ kpc – 8) × 10{sup 10} M {sub ☉} and a total local surface density of Σ{sub R{sub 0}}(Z=1.1 kpc)=68 ± 4 M{sub ⊙} pc{sup −2} of which 38 ± 4 M {sub ☉} pc{sup –2} is contributed by stars and stellar remnants. By combining our surface density measurements with the terminal velocity curve, we find that the MW's disk is maximal in the sense that V {sub c,} {sub disk}/V {sub c,} {sub total} = 0.83 ± 0.04 at R = 2.2 R{sub d} . We also constrain for the first time the radial profile of the dark halo at such small Galactocentric radii, finding that ρ{sub DM}(r; ≈R {sub 0})∝1/r {sup α} with α < 1.53 at 95% confidence. Our results show that action-based DF modeling of complex stellar data sets is now a feasible approach that will be fruitful for interpreting Gaia data.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Calibration and characterization of the line-VISAR diagnostic at the HED-HIBEF instrument at the European XFEL

In dynamic-compression experiments, the line-imaging Velocity Interferometer System for Any Reflector (VISAR) is a well-established diagnostic used to probe the velocity history, including wave profiles derived from dynamically compressed interfaces and wavefronts, depending on material optical properties. Knowledge of the velocity history allows for the determination of the pressure achieved during compression. Such a VISAR analysis is often based on Fourier transform techniques and assumes that the recorded interferograms are free from image distortions. In this paper, we describe the VISAR diagnostic installed at the HED-HIBEF instrument located at the European XFEL along with its calibration and characterization. It comprises a two-color (532, 1064 nm), three-arm (with three velocity sensitivities) line imaging system. We provide a procedure to correct VISAR images for geometric distortions and evaluate the performance of the system using Fourier analysis. We finally discuss the spatial and temporal calibrations of the diagnostic. As an example, we compare the pressure extracted from the VISAR analysis of shock-compressed polyimide and silicon.

47 OTHER INSTRUMENTATION↗

DOE OSTI2024

Spatially distributed atmospheric boundary layer properties in Houston – A value-added observational dataset

Abstract In 2022, Houston, TX became a nexus for field campaigns aiming to further our understanding of the feedbacks between convective clouds, aerosols and atmospheric boundary layer (ABL) properties. Houston’s proximity to the Gulf of Mexico and Galveston Bay motivated the collection of spatially distributed observations to disentangle coastal and urban processes. This paper presents a value-added ABL dataset derived from observations collected by eight research teams over 46 days between 2 June - 18 September 2022. The dataset spans 14 sites distributed within a ~80-km radius around Houston. Measurements from three types of instruments are analyzed to objectively provide estimates of nine ABL parameters, both thermodynamic (potential temperature, and relative humidity profiles and thermodynamic ABL depth) and dynamic (horizontal wind speed and direction, mean vertical velocity, updraft and downdraft speed profiles, and dynamical ABL depth). Contextual information about cloud occurrence is also provided. The dataset is prepared on a uniform time-height grid of 1 h and 30 m resolution to facilitate its use as a benchmark for forthcoming numerical simulations and the fundamental study of atmospheric processes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2014

Dynamic Fano-like resonances in erbium-doped whispering-gallery-mode microresonators

We report Fano-like asymmetric resonances modulated by optical gain in a whispering-gallery-mode resonator fabricated from erbium-doped silica. A time-dependent gain profile leads to dynamically varying sharp asymmetric resonances with features similar to Fano resonances. Depending on the scan speed of the frequency of the probe laser and the pump-probe power ratio, transmission spectra of the active microcavity exhibit a resonance dip, a resonance peak, or a Fano-like resonance.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2024

Field Performance of Commercial Building Load Flexibility Using Model Predictive Control

Model Predictive Control (MPC) applied to buildings is starting to see some commercial adoption by companies. However, it is hard to estimate if relative energy cost savings are enough to justify the cost of MPC implementation with few reported demonstrations. In small commercial and residential buildings, a one size-fits-all solution can help reduce implementation costs, while in very large buildings or districts the potential energy cost savings magnitude can cover more tailored solutions. This estimation becomes harder for medium to large commercial buildings, where a one-size-fits-all solution cannot be adopted and potential energy cost savings might not be sufficient to cover a tailored solution. Therefore, value propositions in addition to energy efficiency alone can make MPC technology more attractive through additional energy cost savings. One such value proposition is load shifting in response to dynamic electricity prices. On this aspect, MPC is a key technology to unlock building thermal mass for energy flexibility in response to electric grid conditions. This study shows the experimental results of MPC control of an office building in Berkeley, where different dynamic electricity price profiles were used in the MPC objective function to shift the building load and to calculate hypothetical electricity costs. Results show potential 50% cost savings with respect to the existing controller with the dynamic price scenario.

Zanetti, Ettore↗

DOE OSTI2012

Characterization of Ion Profiles in Light-Emitting Electrochemical Cells by Secondary Ion Mass Spectrometry

Ion profiles in polymer light-emitting electrochemical cells are known to significantly affect performance and stability, but are not easily measured. Here, secondary ion mass spectrometry is used to investigate ion profiles in both dynamic and chemically fixed junction devices. Results indicate lower reversibility of dynamic junctions and a more significant time delay for ion redistribution than previously expected, but confirm the complete immobilization of ions in chemically fixed junction devices. When compared with prior studies analyzing the electric field profiles in similar devices, these results help to elucidate the roles of ion distribution and electrochemical doping in LECs.

36 MATERIALS SCIENCE↗

DOE OSTI2022

GLOW: A Workflow Integrating Gaussian-Accelerated Molecular Dynamics and Deep Learning for Free Energy Profiling

Not provided.

Chemistry↗

DOE OSTI2013

Effect of the plasma production rate on the implosion dynamics of cylindrical wire/fiber arrays with a profiled linear mass

Results are presented from experimental studies on the implosion of arrays made of wires and metalized fibers under the action of current pulses with an amplitude of up to 3.5 MA at the Angara-5-1 facility. The effect of the parameters of an additional linear mass of bismuth and gold deposited on the wires/fibers is investigated. It is examined how the material of the wires/fibers and the metal coating deposited on them affect the penetration of the plasma with the frozen-in magnetic field into a cylindrical array. Information on the plasma production rate <##> } } m ˙ } B i $ /dot m{sub {Bi}} $ m-dot {sub Bi} </##> for different metals is obtained by analyzing optical streak images of imploding arrays. The plasma production rate for cylindrical arrays made of the kapron fibers coated with bismuth is determined. For the initial array radius of R{sub 0} = 1 cm and discharge current of I = 1 MA, the plasma production rate is found to be <##> } } m ˙ } B i ≈ 0.095 ± 0.015 $ /dot m{sub {Bi}} /approx 0.095 /pm 0.015 $ m-dot {sub Bi}≈0.095±0.015 </##> μg/(cm{sup 2} ns).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS1993

Cloud, dust, and ozone vertical profiles from solar occultation measurements: Implications for dynamics

An instrument was designed for solar occultation measurements of the martian atmosphere from the Phobos spacecraft. It was composed of three different dispersive systems working in the ultraviolet (UV: 0.22-0.32 microns) for the measurement of O3 and aerosols, in the near infrared (NIR: 0.76 microns, 0.94 microns) for the detection of O2 and H2O, and in the infrared (IR: 1.9 microns, 3.7 microns) where CO2 and H2O were measured. A detailed description of the instrument may be found in the special issue of Nature. Its principle objective is to measure from the Phobos orbit the spectrum of the Sun, modified by atmospheric extinction, during sunset. The UV-NIR spot has an angular diameter of 1 arcmin, or approximately 3 km vertical resolution, and is located near the center of the solar disk. The IR field is about twice as large and its line of sight is shifted by 8.5 arcmin, or approximately 20 km, relative to the previous one. It is therefore located near the edge of the solar disk. Sampling times are generally 0.5, 1, and 2 s for IR, UV, and NIR channels respectively, corresponding to vertical excursions of the line of sight of 1, 2, and 4 km respectively under nominal conditions. The instrument operated from February 8 to March 26 (the martian equinox occurred on February 17). The latitude of the intersection of the Sun-spacecraft axis with the surface of Mars varied from -11 to +20, the seasonal date L(sub s) being in the range 0 - 20. All measurements were therefore made near northern spring equinox in equatorial regions. Due to an error in the pointing system, only partial results were obtained, the region below approximately equals 30 km altitude being never sounded by the UV-NIR spectrometer. On the contrary, nine complete occultations were obtained in the IR channels, whose line of sight was fortunately approximately equals 20 km below the UV-NIR axis.

Chassefiere, E.↗

DOE OSTI2011

FREEZE-OUT YIELDS OF RADIOACTIVITIES IN CORE-COLLAPSE SUPERNOVAE

We explore the nucleosynthesis trends from two mechanisms during freeze-out expansions in core-collapse supernovae. The first mechanism is related to the convection and instabilities within homogeneous stellar progenitor matter that is accreted through the supernova shock. The second mechanism is related to the impact of the supersonic wind termination shock (reverse shock) within the tumultuous inner regions of the ejecta above the proto-neutron star. Our results suggest that isotopes in the mass range 12 {<=} A {<=} 122 that are produced during the freeze-out expansions may be classified in two families. The isotopes of the first family manifest a common mass fraction evolutionary profile, whose specific shape per isotope depends on the characteristic transition between two equilibrium states (equilibrium state transition) during each type of freeze-out expansion. The first family includes the majority of isotopes in this mass range. The second family is limited to magic nuclei and isotopes in their locality, which do not sustain any transition, become nuclear flow hubs, and dominate the final composition. We use exponential and power-law adiabatic profiles to identify dynamic large-scale and small-scale equilibrium patterns among nuclear reactions. A reaction rate sensitivity study identifies those reactions that are crucial to the synthesis of radioactivities in the mass range of interest. In addition, we introduce non-monotonic parameterized profiles to probe the impact of the reverse shock and multi-dimensional explosion asymmetries on nucleosynthesis. Cases are shown in which the non-monotonic profiles favor the production of radioactivities. Non-monotonic freeze-out profiles involve longer non-equilibrium nucleosynthesis intervals compared with the exponential and power-law profiles, resulting in mass fraction trends and yield distributions that may not be achieved by the monotonic freeze-out profiles.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS2004

Recent Developments in OVERGRID, OVERFLOW-2 and Chimera Grid Tools Scripts

OVERGRID and OVERFLOW-2 feature easy to use multiple-body dynamics. The new features of OVERGRID include a preliminary chemistry interface, standard atmosphere and mass properties calculators, a simple unsteady solution viewer, and a debris tracking interface. Script library development in Chimera Grid Tools has applications in turbopump grid generation. This viewgraph presentation profiles multiple component dynamics, validation test cases for a sphere, cylinder, and oscillating airfoil, and debris analysis.

Chan, William M.↗

NASA NTRS2014

Searching for Dark Matter Annihilation in the Smith High-Velocity Cloud

Recent observations suggest that some high-velocity clouds may be confined by massive dark matter halos. In particular, the proximity and proposed dark matter content of the Smith Cloud make it a tempting target for the indirect detection of dark matter annihilation. We argue that the Smith Cloud may be a better target than some Milky Way dwarf spheroidal satellite galaxies and use gamma-ray observations from the Fermi Large Area Telescope to search for a dark matter annihilation signal. No significant gamma-ray excess is found coincident with the Smith Cloud, and we set strong limits on the dark matter annihilation cross section assuming a spatially extended dark matter profile consistent with dynamical modeling of the Smith Cloud. Notably, these limits exclude the canonical thermal relic cross section (approximately 3 x 10 (sup −26) cubic centimeters per second) for dark matter masses less than or approximately 30 gigaelectronvolts annihilating via the B/B- bar oscillation or tau/antitau channels for certain assumptions of the dark matter density profile; however, uncertainties in the dark matter content of the Smith Cloud may significantly weaken these constraints.

gamma rays: ISM aEuro" ISM: clouds↗

DOE OSTI2016

CLASH-VLT: testing the nature of gravity with galaxy cluster mass profiles

We use high-precision kinematic and lensing measurements of the total mass profile of the dynamically relaxed galaxy cluster MACS J1206.2-0847 at z=0.44 to estimate the value of the ratio η=Ψ/Φ between the two scalar potentials in the linear perturbed Friedmann-Lemaitre-Robertson-Walker metric. An accurate measurement of this ratio, called anisotropic stress, could show possible, interesting deviations from the predictions of the theory of General Relativity, according to which Ψ should be equal to Φ. Complementary kinematic and lensing mass profiles were derived from exhaustive analyses using the data from the Cluster Lensing And Supernova survey with Hubble (CLASH) and the spectroscopic follow-up with the Very Large Telescope (CLASH-VLT). Whereas the kinematic mass profile tracks only the time-time part of the perturbed metric (i.e. only Φ), the lensing mass profile reflects the contribution of both time-time and space-space components (i.e. the sum Φ+Ψ). We thus express η as a function of the mass profiles and perform our analysis over the radial range 0.5 Mpc≤ r≤ r{sub 200}=1.96 Mpc. Using a spherical Navarro-Frenk-White mass profile, which well fits the data, we obtain η(r{sub 200})=1.01 {sub −0.28}{sup +0.31} at the 68% C.L. We discuss the effect of assuming different functional forms for mass profiles and of the orbit anisotropy in the kinematic reconstruction. Interpreting this result within the well-studied f(R) modified gravity model, the constraint on η translates into an upper bound to the interaction length (inverse of the scalaron mass) smaller than 2 Mpc. This tight constraint on the f(R) interaction range is however substantially relaxed when systematic uncertainties in the analysis are considered. Our analysis highlights the potential of this method to detect deviations from general relativity, while calling for the need of further high-quality data on the total mass distribution of clusters and improved control on systematic effects.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS2007

Advanced NASA Earth Science Mission Concept for Vegetation 3D Structure, Biomass and Disturbance

Carbon in forest canopies represents about 85% of the total carbon in the Earth's aboveground biomass (Olson et al., 1983). A major source of uncertainty in global carbon budgets derives from large errors in the current estimates of these carbon stocks (IPCC, 2001). The magnitudes and distributions of terrestrial carbon storage along with changes in sources and sinks for atmospheric C02 due to land use change remain the most significant uncertainties in Earth's carbon budget. These uncertainties severely limit accurate terrestrial carbon accounting; our ability to evaluate terrestrial carbon management schemes; and the veracity of atmospheric C02 projections in response to further fossil fuel combustion and other human activities. Measurements of vegetation three-dimensional (3D) structural characteristics over the Earth's land surface are needed to estimate biomass and carbon stocks and to quantify biomass recovery following disturbance. These measurements include vegetation height, the vertical profile of canopy elements (i.e., leaves, stems, branches), andlor the volume scattering of canopy elements. They are critical for reducing uncertainties in the global carbon budget. Disturbance by natural phenomena, such as fire or wind, as well as by human activities, such as forest harvest, and subsequent recovery, complicate the quantification of carbon storage and release. The resulting spatial and temporal heterogeneity of terrestrial biomass and carbon in vegetation make it very difficult to estimate terrestrial carbon stocks and quantify their dynamics. Vegetation height profiles and disturbance recovery patterns are also required to assess ecosystem health and characterize habitat. The three-dimensional structure of vegetation provides habitats for many species and is a control on biodiversity. Canopy height and structure influence habitat use and specialization, two fundamental processes that modify species richness and abundance across ecosystems. Accurate and consistent 3D measurements of forest structure at the landscape scale are needed for assessing impacts to animal habitats and biodiversity following disturbance.

Ranson, K. Jon↗