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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Substantial carbon loss respired from a corn–soybean agroecosystem highlights the importance of careful management as we adapt to changing climate

Understanding agroecosystem carbon (C) cycle response to climate change and management is vital for maintaining their long-term C storage. We demonstrate this importance through an in-depth examination of a ten-year eddy covariance dataset from a corn–corn–soybean crop rotation grown in the Midwest United States. Ten-year average annual net ecosystem exchange (NEE) showed a net C sink of –0.39 Mg C ha –1 yr –1 . However, NEE in 2014 and 2015 from the corn ecosystem was 3.58 and 2.56 Mg C ha –1 yr –1 , respectively. Most C loss occurred during the growing season, when photosynthesis should dominate and C fluxes should reflect a net ecosystem gain. Partitioning NEE into gross primary productivity (GPP) and ecosystem respiration (ER) showed this C 'burp' was driven by higher ER, with a 51% (2014) and 57% (2015) increase from the ten-year average (15.84 Mg C ha –1 yr –1 ). GPP was also higher than average (16.24 Mg C ha –1 yr –1 ) by 25% (2014) and 37% (2015), but this was not enough to offset the C emitted from ER. This increased ER was likely driven by enhanced soil microbial respiration associated with ideal growing season climate, substrate availability, nutrient additions, and a potential legacy effect from drought.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits

Abstract The recent assembly and annotation of the 26 maize nested association mapping population founder inbreds have enabled large-scale pan-genomic comparative studies. These studies have expanded our understanding of agronomically important traits by integrating pan-transcriptomic data with trait-specific gene candidates from previous association mapping results. In contrast to the availability of pan-transcriptomic data, obtaining reliable protein–protein interaction (PPI) data has remained a challenge due to its high cost and complexity. We generated predicted PPI networks for each of the 26 genomes using the established STRING database. The individual genome-interactomes were then integrated to generate core- and pan-interactomes. We deployed the PPI clustering algorithm ClusterONE to identify numerous PPI clusters that were functionally annotated using gene ontology (GO) functional enrichment, demonstrating a diverse range of enriched GO terms across different clusters. Additional cluster annotations were generated by integrating gene coexpression data and gene description annotations, providing additional useful information. We show that the functionally annotated PPI clusters establish a useful framework for protein function prediction and prioritization of candidate genes of interest. Our study not only provides a comprehensive resource of predicted PPI networks for 26 maize genomes but also offers annotated interactome clusters for predicting protein functions and prioritizing gene candidates. The source code for the Python implementation of the analysis workflow and a standalone web application for accessing the analysis results are available at https://github.com/eporetsky/PanPPI.

Genetics & Heredity↗
DOE OSTI2020

Formation of SMBH seeds in Population III star clusters through collisions: the importance of mass loss

ABSTRACT Runaway collisions in dense clusters may lead to the formation of supermassive black hole (SMBH) seeds, and this process can be further enhanced by accretion, as recent models of SMBH seed formation in Population III star clusters have shown. This may explain the presence of SMBHs already at high redshift, z > 6. However, in this context, mass loss during collisions was not considered and could play an important role for the formation of the SMBH seed. Here, we study the effect of mass loss, due to collisions of protostars, in the formation and evolution of a massive object in a dense primordial cluster. We consider both constant mass-loss fractions as well as analytic models based on the stellar structure of the collision components. Our calculations indicate that mass loss can significantly affect the final mass of the possible SMBH seed. Considering a constant mass loss of 5 per cent for every collision, we can lose between 60–80 per cent of the total mass that is obtained if mass loss were not considered. Using instead analytical prescriptions for mass loss, the mass of the final object is reduced by 15–40 per cent, depending on the accretion model for the cluster we study. Altogether, we obtain masses of the order of $10^4\, \mathrm{M}_{\odot }$, which are still massive enough to be SMBH seeds.

Alister Seguel, P. J.↗
DOE OSTI2022

Radio AGN in nearby dwarf galaxies: the important role of AGN in dwarf galaxy evolution

ABSTRACT We combine deep optical and radio data, from the Hyper Suprime-Cam and the Low-Frequency Array (LOFAR), respectively, to study 78 radio active galactic nuclei (AGN) in nearby (z < 0.5) dwarf galaxies. Comparison to a control sample, matched in stellar mass and redshift, indicates that the AGN and controls reside in similar environments, show similar star formation rates (which trace gas availability) and exhibit a comparable incidence of tidal features (which indicate recent interactions). We explore the AGN properties by combining the predicted gas conditions in dwarfs from a cosmological hydrodynamical simulation with a Monte Carlo suite of simulated radio sources, based on a semi-analytical model for radio-galaxy evolution. In the subset of LOFAR-detectable simulated sources, which have a similar distribution of radio luminosities as our observed AGN, the median jet powers, ages, and accretion rates are ∼1035 W, ∼5 Myr, and ∼10−3.4 M⊙ yr−1, respectively. The median mechanical energy output of these sources is ∼100 times larger than the median binding energy expected in dwarf gas reservoirs, making AGN feedback plausible. Since special circumstances (in terms of environment, gas availability, and interactions) are not necessary for the presence of AGN, and the central gas masses are predicted to be an order of magnitude larger than that required to fuel the AGN, AGN triggering in dwarfs is likely to be stochastic and a common phenomenon. Together with the plausibility of energetic feedback, this suggests that AGN could be important drivers of dwarf galaxy evolution, as is the case in massive galaxies.

Davis, F. (ORCID:0000000285224980)↗
DOE OSTI2021

The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity

HIV-1 reverse transcription initiates at the primer binding site (PBS) in the viral genomic RNA (gRNA). Although the structure of the PBS-segment undergoes substantial rearrangement upon tRNALys3 annealing, the proper folding of the PBS-segment during gRNA packaging is important as it ensures loading of beneficial host factors. DHX9/RNA helicase A (RHA) is recruited to gRNA to enhance the processivity of reverse transcriptase. Because the molecular details of the interactions have yet to be defined, we solved the solution structure of the PBS-segment preferentially bound by RHA. Evidence is provided that PBS-segment adopts a previously undefined adenosine-rich three-way junction structure encompassing the primer activation stem (PAS), tRNA-like element (TLE) and tRNA annealing arm. Disruption of the PBS-segment three-way junction structure diminished reverse transcription products and led to reduced viral infectivity. Because of the existence of the tRNA annealing arm, the TLE and PAS form a bent helical structure that undergoes shape-dependent recognition by RHA double-stranded RNA binding domain 1 (dsRBD1). Mutagenesis and phylogenetic analyses provide evidence for conservation of the PBS-segment three-way junction structure that is preferentially bound by RHA in support of efficient reverse transcription, the hallmark step of HIV-1 replication.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Dark Energy Survey Year 6 results: Clustering redshifts and importance sampling of self-organized-maps 𝑛⁡(𝑧) realizations for 3 × 2 ⁢pt samples

This work is part of a series establishing the redshift framework for the 3 × 2 ⁢pt analysis of the Dark Energy Survey Year 6 (DES Y6). For DES Y6, photometric redshift distributions are estimated using self-organizing maps (SOMs), calibrated with spectroscopic and many-band photometric data. To overcome limitations from color-redshift degeneracies and incomplete spectroscopic coverage, we enhance this approach by incorporating clustering-based redshift constraints (clustering-z, or WZ) from angular cross-correlations with BOSS and eBOSS galaxies and eBOSS quasar samples. We define a WZ likelihood and apply importance sampling to a large ensemble of SOM-derived 𝑛⁡(𝑧) realizations, selecting those consistent with the clustering measurements to produce a posterior sample for each lens and source bin. The analysis uses angular scales corresponding to 1.5–5 Mpc to optimize signal-to-noise ratio while mitigating modeling uncertainties and marginalizes over redshift-dependent galaxy bias and other systematics informed by the N-body simulation CARDINAL . While a sparser spectroscopic reference sample limits WZ constraining power at 𝑧 >1.1, particularly for source bins, we demonstrate that combining SOM with WZ improves redshift accuracy and enhances the overall cosmological constraining power of DES Y6. As a result, we estimate an improvement in 𝑆 8 of approximately 10% for cosmic shear and 3 ×2⁢pt analysis, primarily due to the WZ calibration of the source samples.

Cosmological parameters↗
DOE OSTI2021

Importance of bulk excitations and coherent electron-photon-phonon scattering in photoemission from PbTe(111): Ab initio theory with experimental comparisons

This paper presents a fully ab initio many-body photoemission framework that includes coherent three-body electron-photon-phonon scattering to predict the transverse momentum distributions and the mean transverse energies (MTEs) of bulk photoelectrons from single-crystal photocathodes. The need to develop such a theory stems from the lack of studies that provide complete understanding of the underlying fundamental processes governing the transverse momentum distribution of photoelectrons emitted from single crystals. For example, initial predictions based on density-functional theory calculations of effective electron masses suggested that the (111) surface of PbTe would produce very small MTEs (≤ 15 meV), whereas our experiments yielded MTEs ten to twenty times larger than these predictions and also exhibited a lower photoemission threshold than predicted. The ab initio framework presented in this paper correctly reproduces both the magnitude of the MTEs from our measurements in PbTe(111) and the observed photoemission below the predicted threshold. Our results show that both photoexcitations into states that propagate in the bulk of the material and coherent many-body electron-photon-phonon scattering processes, which initial predictions ignored, play surprisingly important roles in photoemission from PbTe(111). Lastly, from the lessons learned, we recommend a procedure for rapid computational screening of potential single-crystal photocathodes for applications in next-generation ultrafast electron diffraction and X-ray free-electron lasers, which will enable significant advances in condensed matter research.

36 MATERIALS SCIENCE↗
DOE OSTI2020

γ -ray spectroscopy of astrophysically important states in Ca 39

Background: Nova explosions synthesize elements up to A ≃ 40 , and discrepancies exist between calculated and observed abundances of Ar and Ca created in the explosion. The K 38 ( p , γ ) Ca 39 reaction rate has been illustrated to be influential on these isotopic abundances at the endpoint of nova nucleosynthesis. The energies of the three most important resonances, corresponding to J π = 5 / 2 + excited states in the Ca 39 nucleus above the proton separation threshold, are uncertain and one has been measured with conflicting values [ E r = 679 ( 2 ) versus E r = 701 ( 2 ) keV] in previous experiments. Purpose: Reducing the uncertainties on the resonance energies would allow for a better understanding of the reaction rate. To improve these uncertainties, we searched for γ rays from the depopulation of the corresponding excited states in Ca 39 . Methods: We report a new measurement of these resonance energies via the observation of previously unobserved γ -ray transitions. These transitions were observed by studying the Ca 40 ( 3 He , α γ ) Ca 39 reaction with Gammasphere ORRUBA Dual Detectors for Experimental Structure Studies (GODDESS). The updated resonance energies were then used to calculate the K 38 ( p , γ ) Ca 39 reaction rate and assess its uncertainties. Results: In total, 23 new transitions were found, including three γ -ray transitions corresponding to the three J π = 5 / 2 + states of astrophysical interest at energies of 6156.2(16), 6268.8(22), and 6470.8(19) keV. These correspond to resonance energies in the K 38 ( p , γ ) Ca 39 reaction of 386(2), 498(2), and 701(2) keV. Conclusions: Updated K 38 ( p , γ ) Ca 39 reaction rate calculations reflect a reduced upper limit at nova temperatures. However, the lower-than-previously-measured energy of the 498-keV resonance and uncertainty in its resonance strength increases the upper limit of the rate close to previous estimates at 0.4 GK.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Importance of gyrokinetic exact Fokker-Planck collisions in fusion plasma turbulence

Gyrokinetic simulations of turbulence are fundamental to understanding and predicting particle and energy loss in magnetic fusion devices. Previous works have used model collision operators with approximate field-particle terms of unknown accuracy and/or have neglected collisional finite Larmor radius effects. This research moves beyond models to demonstrate important corrections using a gyrokinetic Fokker-Planck collision operator with the exact field-particle terms, in realistic simulations of turbulence in magnetically confined fusion plasmas. The exact operator shows significant corrections for temperature-gradient-driven trapped electron mode turbulence and zonal flow damping, and for microtearing modes in a Joint European Torus pedestal under ITER-like wall conditions. Analysis of the corrections using parameter scans motivates an accurate model which closely reproduces the exact results while reducing computational demands.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2026

PPT1-mediated plastidic phospho enol pyruvate import enhances fatty acid biosynthesis in sugar-rich tissues

Metabolic engineering of vegetative tissues for lipid production holds transformative potential for sustainable biofuels, yet achieving sufficient yields remains challenging. Here, we present a strategy to enhance fatty acid synthesis by redirecting cytosolic phospho enol pyruvate (PEP) into plastids through overexpression of the plastidial phospho enol pyruvate/phosphate translocator ( PPT1 ) in vegetative tissues of Arabidopsis thaliana . Integrated metabolomic and transcriptomic analyses revealed that AtPPT1 overexpression alleviated metabolite overaccumulation in high-sugar tissues, consistent with enhanced carbon flux coordination between the cytosol and chloroplast. Notably, phosphofructokinase activity, a key step in glycolysis, was elevated, linking plastidic PEP import to increased glycolytic throughput. In Arabidopsis, overexpression of AtPPT1 increased fatty acid content and lipid droplet accumulation in the sugar-accumulating sweet11;12;13 mutant, but not in wild-type Col-0. Together, these findings establish PEP redirection as an effective strategy to boost fatty acid and lipid production in sugar-rich vegetative tissues and provide a complementary metabolic module for future lipid-engineering efforts.

Arabidopsis thaliana↗
DOE OSTI2021

Contrasting anther glucose–6–phosphate dehydrogenase activities between two bean varieties suggest an important role in reproductive heat tolerance

Common beans (Phaseolus vulgaris) are highly sensitive to elevated temperatures, and rising global temperatures threaten bean production. Plants at the reproductive stage are especially susceptible to heat stress due to damage to male (anthers) and female (ovary) reproductive tissues, with anthers being more sensitive to heat. Heat damage promotes early tapetal cell degradation, and in beans this was shown to cause male infertility. In this study, we focus on understanding how changes in leaf carbon export in response to elevated temperature stress contribute to heat-induced infertility. We hypothesize that anther glucose-6-phosphate dehydrogenase (G6PDH) activity plays an important role at elevated temperature and promotes thermotolerance. To test this hypothesis, we compared heat-tolerant and susceptible common bean genotypes using a combination of phenotypic, biochemical, and physiological approaches. Our results identified changes in leaf sucrose export, anther sugar accumulation and G6PDH activity and anther H 2 O 2 levels and antioxidant-related enzymes between genotypes at elevated temperature. Further, anther respiration rate was found to be lower at high temperature in both bean varieties. Overall, our results support the hypothesis that enhanced male reproductive heat tolerance involves changes in the anther oxidative pentose phosphate pathway, which supplies reductants to critical H 2 O 2 scavenging enzymes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Reestablishing larval connectivity in an estuarine landscape: the importance of shoreline and subtidal oysters ( Crassostrea virginica ) in a comprehensive oyster restoration program

The decline of oyster reefs in estuaries has resulted from a combination of chronic and acute disturbances. The loss has resulted in decreased yield for the oyster fishery as well as a decline in ecological benefits that has led to increased efforts to restore oyster reefs. The need for scientific guidance in accomplishing these restoration goals has become even more pressing in the northcentral Gulf of Mexico in the wake of injury to oyster reefs resulting from the Deepwater Horizon oil spill. Restoration of both the shallow, marsh-fringing oyster aggregations and the deeper subtidal oyster reefs is necessary. Historically, fringing oysters have been overlooked in the oyster habitat landscape because of their limited commercial value. Here, we use a biophysical transport model to examine the transport and settlement of oyster larvae in known oyster reefs along the coast of the northcentral Gulf of Mexico. The modeling demonstrated that the majority of oyster larvae settle within the embayment (>98%) or sub-basin (>65%) of their origin. Additionally, the model demonstrated the importance of fringing oysters as a source of larvae to re-seed other fringing oysters along marsh edges as well as subtidal oyster reefs. We conclude that networks of reefs, including both fringing oyster habitat and subtidal oyster reefs within sub-basins, are necessary to provide resilience to the population at the sub-basin level. Finally, we conclude that fringing oyster habitat may serve as an archipelago-like network to enhance larval supply and connectivity for oysters throughout the mesosaline portions of estuaries.

ADCIRC↗
DOE OSTI2020

Microbial Communities across Global Marine Basins Show Important Compositional Similarities by Depth

The environmental surveys following the 2010 Deepwater Horizon (DWH) spill identified a variety of hydrocarbon-degrading microorganisms, and laboratory studies with field-collected water samples then demonstrated faster-than-expected hydrocarbon biodegradation rates at 5°C. Knowledge about microbial community composition, diversity, and functional metabolic capabilities aids in understanding and predicting petroleum biodegradation by microbial communities in situ and is therefore an important component of the petroleum spill response decision-making process. This study investigates the taxonomic composition of microbial communities in six different global basins where petroleum and gas activities occur. Shallow-water communities were strikingly similar across basins, while deep-water communities tended to show subclusters by basin, with communities from the epipelagic, mesopelagic, and bathypelagic zones sometimes appearing within the same cluster. Microbial taxa that were enriched in the water column in the Gulf of Mexico following the DWH spill were found across marine basins. Several hydrocarbon-degrading genera (e.g., Actinobacteria, Pseudomonas, and Rhodobacteriacea) were common across all basins. Other genera such as Pseudoalteromonas and Oleibacter were highly enriched in specific basins.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

On Relative Importance of Vehicular and Structural Motions in Defining Electrolyte Transport

Molecular motions of ionic and neutral electrolyte species determine transport properties at the continuum scale. These molecular motions can be classified as vehicular (e.g., cations moving with a solvation shell of neighboring solvent molecules) and structural (e.g., cations hopping from one solvation shell to another) motions. While literature studies have described the presence, and relative importance, of each of these motions in various electrolytes, a clear link to macroscopic transport properties has not been made. We herein establish this link by using the fluctuation-dissipation theorem to develop theoretical expressions connecting the molecular displacements to Stefan-Maxwell diffusivities. To illustrate the usefulness of the proposed equations, we study LiPF 6 in propylene carbonate as an exemplar electrolyte. We show that its transport behavior improves at all concentrations when structural diffusion of cations is promoted. On the other hand, boosting the cation vehicular diffusion negatively affects the concentrated compositions. We extend this understanding to a generalized electrolyte of a salt dissolved in a solvent. Our theory suggests that while structural diffusion influences Stefan-Maxwell diffusivities globally, vehicular diffusion is only relevant under certain conditions. Such guidelines are critical for a bottom-up design of electrolyte transport.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Customs: Inspect and Report Python Imports (customs) v1.0.0

We have developed a simple, minimally invasive monitoring framework that enables us to capture key metrics from Python user processes. This is part of a larger effort to collect data across our entire data-intensive science workload at NERSC. The approach for Python is inspired by a similar framework developed for Blue Waters at NCSA. Both frameworks leverage standard Python features, sitecustomize and atexit, to capture Python imports of interest and other job data. The customs package decomposes the information capture into separate inspection and reporting interfaces.

Thomas, Rollin↗
DOE OSTI2021

GANISP (GAN-assisted Importance SPlitting)

Genealogical importance splitting marches towards a rare event by iteratively selecting and replicating realizations that are headed towards a rare event. The replication step is made difficult when applied to deterministic systems as the initial conditions of the offspring realizations need to be adjusted. Typically, a random perturbation is applied to the offspring. For some cases, this cloning technique may not be adequate and prevent variance reduction in the probability estimate. A GAN-based replication process is proposed to address this limitation. The perturbations applied to the clones are physically consistent instead of being randomly chosen. The proposed method allows reducing the variance in the probability estimation.

Hassanaly, Malik↗
DOE OSTI2026

Dart Explicit Imports

A Dart analyzer/linter plugin that enforces explicit import statements

Howington, Connor [Fermilab]↗
DOE OSTI2021

Importance of suberin biopolymer in plant function, contributions to soil organic carbon and in the production of bio-derived energy and materials

Abstract Suberin is a hydrophobic biopolymer of significance in the production of biomass-derived materials and in biogeochemical cycling in terrestrial ecosystems. Here, we describe suberin structure and biosynthesis, and its importance in biological (i.e., plant bark and roots), ecological (soil organic carbon) and economic (biomass conversion to bioproducts) contexts. Furthermore, we highlight the genomics and analytical approaches currently available and explore opportunities for future technologies to study suberin in quantitative and/or high-throughput platforms in bioenergy crops. A greater understanding of suberin structure and production in lignocellulosic biomass can be leveraged to improve representation in life cycle analysis and techno-economic analysis models and enable performance improvements in plant biosystems as well as informed crop system management to achieve economic and environmental co-benefits.

09 BIOMASS FUELS↗