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At least 181 records · Page 10

Subsurface Intertidal Microbes: A Cryptic Source Of Organic Carbon For Beach Ecosystems

Some freshwater, marine or hotspring beaches have no visible source of primary production, yet beneath the surface is an interstitial photosynthetic microbial community. To assess the significance of this source of organic carbon, we measured in situ carbon fixation rates in an intertidal marine beach through a diurnal cycle. Gross fixation for a transect (99 x 1 m) perpendicular to the shore was approx. 4041 mg C fixed/ day, or approx. 41 mg C fixed/ sq m day. In contrast, an adjacent well-established cyanobacterial (Lyngbya) mat was approx. 12 x as productive (approx. 490 mg C fixed/sq m day). Thus, subsurface sand mats may be an overlooked, yet important, endogenous source of organic carbon for intertidal ecosystems, as well as a sink in the global carbon cycle.

Rothschild, Lynn J.↗

Learning instrument invariant characteristics for generating high-resolution global coral reef maps

Coral reefs are one of the most biologically complex and diverse ecosystems within the shallow marine environment. Unfortunately, these underwater ecosystems are threatened by a number of anthropogenic challenges, including ocean acidification and warming, overfishing, and the continued increase of marine debris in oceans. This requires a comprehensive assessment of the world's coastal environments, including a quantitative analysis on the health and extent of coral reefs and other associated marine species, as a vital Earth Science measurement. However, limitations in observational and technological capabilities inhibit global sustained imaging of the marine environment. Harmonizing multimodal data sets acquired using different remote sensing instruments presents additional challenges, thereby limiting the availability of good quality labeled data for analysis. In this work, we develop a deep learning model for extracting domain invariant features from multimodal remote sensing imagery and creating high-resolution global maps of coral reefs by combining various sources of imagery and limited hand-labeled data available for certain regions. This framework allows us to generate, for the first time, coral reef segmentation maps at 2-meter resolution, which is a significant improvement over the kilometer-scale state-of-the-art maps. Additionally, this framework doubles accuracy and IoU metrics over baselines that do not account for domain invariance.

Domain Adaptation↗

Resource Occurrence and Productivity in Existing and Proposed Wind Energy Lease Areas on the Northeast US Shelf

States in the Northeast United States have the ambitious goal of producing more than 22 GW of offshore wind energy in the coming decades. The infrastructure associated with offshore wind energy development is expected to modify marine habitats and potentially alter the ecosystem services. Species distribution models were constructed for a group of fish and macroinvertebrate taxa resident in the Northeast US Continental Shelf marine ecosystem. These models were analyzed to provide baseline context for impact assessment of lease areas in the Middle Atlantic Bight designated for renewable wind energy installations. Using random forest machine learning, models based on occurrence and biomass were constructed for 93 species providing seasonal depictions of their habitat distributions. We developed a scoring index to characterize lease area habitat use for each species. Subsequently, groups of species were identified that reflect varying levels of lease area habitat use ranging across high, moderate, low, and no reliance on the lease area habitats. Among the species with high to moderate reliance were black sea bass ( Centropristis striata ), summer flounder ( Paralichthys dentatus ), and Atlantic menhaden ( Brevoortia tyrannus ), which are important fisheries species in the region. Potential for impact was characterized by the number of species with habitat dependencies associated with lease areas and these varied with a number of continuous gradients. Habitats that support high biomass were distributed more to the northeast, while high occupancy habitats appeared to be further from the coast. There was no obvious effect of the size of the lease area on the importance of associated habitats. Model results indicated that physical drivers and lower trophic level indicators might strongly control the habitat distribution of ecologically and commercially important species in the wind lease areas. Therefore, physical and biological oceanography on the continental shelf proximate to wind energy infrastructure development should be monitored for changes in water column structure and the productivity of phytoplankton and zooplankton and the effects of these changes on the trophic system.

17 WIND ENERGY↗

Global Diversity and Biogeography of the Zostera marina Mycobiome

Seagrasses are marine flowering plants that provide critical ecosystem services in coastal environments worldwide. Marine fungi are often overlooked in microbiome and seagrass studies, despite terrestrial fungi having critical functional roles as decomposers, pathogens, or endophytes in global ecosystems. Here, we characterize the distribution of fungi associated with the seagrass Zostera marina, using leaves, roots, and rhizosphere sediment from 16 locations across its full biogeographic range. Using high-throughput sequencing of the ribosomal internal transcribed spacer (ITS) region and 18S rRNA gene, we first measured fungal community composition and diversity. We then tested hypotheses of neutral community assembly theory and the degree to which deviations suggested that amplicon sequence variants (ASVs) were plant selected or dispersal limited. Finally, we identified a core mycobiome and investigated the global distribution of differentially abundant ASVs. We found that the fungal community is significantly different between sites and that the leaf mycobiome follows a weak but significant pattern of distance decay in the Pacific Ocean. Generally, there was evidence for both deterministic and stochastic factors contributing to community assembly of the mycobiome, with most taxa assembling through stochastic processes. The Z. marina core leaf and root mycobiomes were dominated by unclassified Sordariomycetes spp., unclassified Chytridiomycota lineages (including Lobulomycetaceae spp.), unclassified Capnodiales spp., and Saccharomyces sp. It is clear from the many unclassified fungal ASVs and fungal functional guilds that knowledge of marine fungi is still rudimentary. Further studies characterizing seagrass-associated fungi are needed to understand the roles of these microorganisms generally and when associated with seagrasses. Fungi have important functional roles when associated with land plants, yet very little is known about the roles of fungi associated with marine plants, like seagrasses. In this study, we report the results of a global effort to characterize the fungi associated with the seagrass Zostera marina across its full biogeographic range. Although we defined a putative global core fungal community, it is apparent from the many fungal sequences and predicted functional guilds that had no matches to existing databases that general knowledge of seagrass-associated fungi and marine fungi is lacking. This work serves as an important foundational step toward future work investigating the functional ramifications of fungi in the marine ecosystem.

ITS2↗

An ecological framework for microbial metabolites in the ocean ecosystem

The ocean microbe‐metabolite network involves thousands of individual metabolites that encompass a breadth of chemical diversity and biological functions. These microbial metabolites mediate biogeochemical cycles, facilitate ecological relationships, and impact ecosystem health. While analytical advancements have begun to illuminate such roles, a challenge in navigating the deluge of marine metabolomics information is to identify a subset of metabolites that have the greatest ecosystem impact. Here, we present an ecological framework to distill knowledge of fundamental metabolites that underpin marine ecosystems. We borrow terms from macroecology that describe important species, namely “dominant,” “keystone,” and “indicator” species, and apply these designations to metabolites within the ocean microbial metabolome. These selected metabolites may shape marine community structure, function, and health and provide focal points for enhanced study of microbe‐metabolite networks. Applying ecological concepts to marine metabolites provides a path to leverage metabolomics data to better describe and predict marine microbial ecosystems.

microbial metabolites↗

Marine phytoplankton resilience may moderate oligotrophic ecosystem responses and biogeochemical feedbacks to climate change

Are the oceans turning into deserts? Rising temperature, increasing surface stratification, and decreasing vertical inputs of nutrients are expected to cause an expansion of warm, nutrient deplete ecosystems. Such an expansion is predicted to negatively affect a trio of key ocean biogeochemical features: phytoplankton biomass, primary productivity, and carbon export. However, phytoplankton communities are complex adaptive systems with immense diversity that could render them at least partially resilient to global changes. This can be illustrated by the biology of the Prochlorococcus “collective.” Adaptations to counter stress, use of alternative nutrient sources, and frugal resource allocation can allow Prochlorococcus to buffer climate-driven changes in nutrient availability. In contrast, cell physiology is more sensitive to temperature changes. We argue that biogeochemical models need to consider the adaptive potential of diverse phytoplankton communities. However, a full understanding of phytoplankton resilience to future ocean changes is hampered by a lack of global biogeographic observations to test theories. We propose that the resilience may in fact be greater in oligotrophic waters than currently considered with implications for future predictions of phytoplankton biomass, primary productivity, and carbon export.

54 ENVIRONMENTAL SCIENCES↗

Cross-Disciplinarity in the Advance of Antarctic Ecosystem Research

The biodiversity, ecosystem services and climate variability of the Antarctic continent, and the Southern Ocean are major components of the whole Earth system. Antarctic ecosystems are driven more strongly by the physical environment than many other marine and terrestrial ecosystems. As a consequence, to understand ecological functioning, cross-disciplinary studies are especially important in Antarctic research. The conceptual study presented here is based on a workshop initiated by the Research Programme Antarctic Thresholds - Ecosystem Resilience and Adaption of the Scientific Committee on Antarctic Research, which focused on challenges in identifying and applying cross-disciplinary approaches in the Antarctic. Novel ideas, and first steps in their implementation, were clustered into eight themes, ranging from scale problems, risk maps, organism and ecosystem responses to multiple environmental changes, to evolutionary processes. Scaling models and data across different spatial and temporal scales were identified as an overarching challenge. Approaches to bridge gaps in the research programmes included multi-disciplinary monitoring, linking biomolecular findings and simulated physical environments, as well as integrative ecological modelling. New strategies in academic education are proposed. The results of advanced cross-disciplinary approaches can contribute significantly to our knowledge of ecosystem functioning, the consequences of climate change, and to global assessments that ultimately benefit humankind.

Scaling↗

Compound High Temperature and Low Chlorophyll Extremes in the Ocean Over the Satellite Period

Ocean extreme events severely impact marine organisms and ecosystems. Of particular concern are compoundevents, i.e., when conditions are extreme for multiple potential ocean ecosystem stressors such as temperature and chlorophyll.Yet, little is known about the occurrence, intensity and duration of such compound high temperature (aka marine heatwaves -MHWs) and low chlorophyll (LChl) extreme events, whether their distributions have changed in the past decades and what thepotential drivers are. Here we use satellite-based sea surface temperature and chlorophyll concentration estimates to provide a5first assessment of such compound extreme events. We reveal hotspots of compound MHW and LChl events in the equatorialPacific, along the boundaries of the subtropical gyres, in the northern Indian Ocean, and around Antarctica. In these regions,compound events that typically last one week occur three to seven times more often than expected under the assumption ofindependence between MHWs and LChl events. The occurrence of compound MHW and LChl events varies on seasonalto interannual timescales. At the seasonal timescale, most compound events occur in summer in both hemispheres. At the10interannual timescale, the frequency of compound MHW and LChl events is strongly modulated by large-scale modes of naturalclimate variability such as the El Niño-Southern Oscillation, whose positive phase is associated with increased compoundevent occurrence in the eastern equatorial Pacific and in the Indian Ocean by a factor of up to four. Our results provide a firstunderstanding of where, when and why compound MHW and LChl events occur. Further studies are needed to identify theexact physical and biological drivers of these potentially harmful events in the ocean and their evolution under global warming.

High Temperature↗

The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting—Research Requirements and Applications

Plankton functional diversity is at the core of various ecological processes, including productivity, carbon cycling and sequestration, nutrient cycling, interspecies interactions, food web dynamics and structure. Through these functions, plankton play a critical role in the health of the coastal and open ocean and provide essential ecosystem services. Yet, at present, our understanding of plankton dynamics is insufficient to project how climate change and other human-driven impacts affect the functional diversity of plankton. That limits our ability to predict how critical ecosystem services will change in the future and develop strategies to adapt to these changes.

Plankton↗

The Global Ocean Observing System

A Global Ocean Observing System (GOOS) should be established now with international coordination (1) to address issues of global change, (2) to implement operational ENSO forecasts, (3) to provide the data required to apply global ocean circulation models, and (4) to extract the greatest value from the one billion dollar investment over the next ten years in ocean remote sensing by the world's space agencies. The objectives of GOOS will focus on climatic and oceanic predictions, on assessing coastal pollution, and in determining the sustainability of living marine resources and ecosystems. GOOS will be a complete system including satellite observations, in situ observations, numerical modeling of ocean processes, and data exchange and management. A series of practical and economic benefits will be derived from the information generated by GOOS. In addition to the marine science community, these benefits will be realized by the energy industries of the world, and by the world's fisheries. The basic oceanic variables that are required to meet the oceanic and predictability objectives of GOOS include wind velocity over the ocean, sea surface temperature and salinity, oceanic profiles of temperature and salinity, surface current, sea level, the extent and thickness of sea ice, the partial pressure of CO2 in surface waters, and the chlorophyll concentration of surface waters. Ocean circulation models and coupled ocean-atmosphere models can be used to evaluate observing system design, to assimilate diverse data sets from in situ and remotely sensed observations, and ultimately to predict future states of the system. The volume of ocean data will increase enormously over the next decade as new satellite systems are launched and as complementary in situ measuring systems are deployed. These data must be transmitted, quality controlled, exchanged, analyzed, and archived with the best state-of-the-art computational methods.

Kester, Dana↗

Advancing ocean monitoring and knowledge for societal benefit: the urgency to expand Argo to OneArgo by 2030

The ocean plays an essential role in regulating Earth’s climate, influencing weather conditions, providing sustenance for large populations, moderating anthropogenic climate change, encompassing massive biodiversity, and sustaining the global economy. Human activities are changing the oceans, stressing ocean health, threatening the critical services the ocean provides to society, with significant consequences for human well-being and safety, and economic prosperity. Effective and sustainable monitoring of the physical, biogeochemical state and ecosystem structure of the ocean, to enable climate adaptation, carbon management and sustainable marine resource management is urgently needed. The Argo program, a cornerstone of the Global Ocean Observing System (GOOS), has revolutionized ocean observation by providing real-time, freely accessible global temperature and salinity data of the upper 2,000m of the ocean (Core Argo) using cost-effective simple robotics. For the past 25 years, Argo data have underpinned many ocean, climate and weather forecasting services, playing a fundamental role in safeguarding goods and lives. Argo data have enabled clearer assessments of ocean warming, sea level change and underlying driving processes, as well as scientific breakthroughs while supporting public awareness and education. Building on Argo’s success, OneArgo aims to greatly expand Argo’s capabilities by 2030, expanding to full-ocean depth, collecting biogeochemical parameters, and observing the rapidly changing polar regions. Providing a synergistic subsurface and global extension to several key space-based Earth Observation missions and GOOS components, OneArgo will enable biogeochemical and ecosystem forecasting and new long-term climate predictions for which the deep ocean is a key component. Driving forward a revolution in our understanding of marine ecosystems and the poorly-measured polar and deep oceans, OneArgo will be instrumental to assess sea level change, ocean carbon fluxes, acidification and deoxygenation. Emerging OneArgo applications include new views of ocean mixing, ocean bathymetry and sediment transport, and ecosystem resilience assessment. Implementing OneArgo requires about $100 million annually, a significant increase compared to present Argo funding. OneArgo is a strategic and cost-effective investment which will provide decision-makers, in both government and industry, with the critical knowledge needed to navigate the present and future environmental challenges, and safeguard both the ocean and human wellbeing for generations to come.

ARGO↗

NASA COAST and OCEANIA Airborne Missions Support Ecosystem and Water Quality Research in the Coastal Zone

NASA has a continuing requirement to collect high-quality in situ data for the vicarious calibration of current and next generation ocean color satellite sensors and to validate the algorithms that use the remotely sensed observations. Recent NASA airborne missions over Monterey Bay, CA, have demonstrated novel above- and in-water measurement capabilities supporting a combined airborne sensor approach (imaging spectrometer, microradiometers, and a sun photometer). The results characterize coastal atmospheric and aquatic properties through an end-to-end assessment of image acquisition, atmospheric correction, algorithm application, plus sea-truth observations from state-of-the-art instrument systems. The primary goal is to demonstrate the following in support of calibration and validation exercises for satellite coastal ocean color products: 1) the utility of a multi-sensor airborne instrument suite to assess the bio-optical properties of coastal California, including water quality; and 2) the importance of contemporaneous atmospheric measurements to improve atmospheric correction in the coastal zone. The imaging spectrometer (Headwall) is optimized in the blue spectral domain to emphasize remote sensing of marine and freshwater ecosystems. The novel airborne instrument, Coastal Airborne In-situ Radiometers (C-AIR) provides measurements of apparent optical properties with high dynamic range and fidelity for deriving exact water leaving radiances at the land-ocean boundary, including radiometrically shallow aquatic ecosystems. Simultaneous measurements supporting empirical atmospheric correction of image data are accomplished using the Ames Airborne Tracking Sunphotometer (AATS-14). Flight operations are presented for the instrument payloads using the Center for Interdisciplinary Remotely-Piloted Aircraft Studies (CIRPAS) Twin Otter flown over Monterey Bay during the seasonal fall algal bloom in 2011 (COAST) and 2013 (OCEANIA) to support bio-optical measurements of phytoplankton for coastal zone research.

Airborne Instruments↗

Recent Advances in Assessing Environmental Effects of Marine Renewable Energy Around the World

Marine renewable energy (MRE) is increasingly of interest to coastal nations as a source of renewable energy that can support climate change mitigation goals as well as provide secure locally-produced energy for coastal and island communities. MRE extracts power from tidal streams, waves, ocean currents, run of rivers, and gradients in the ocean, with specialized devices developed and tested for each energy resource. Alongside development of MRE technologies and systems, first in Europe and then in North America, Australia, Asia, and other regions, it has been universally recognized that there is also a need to examine potential effects on marine animals, habitats, ecosystem processes, local communities and other sea users, to ensure that the MRE industry can be developed in a responsible and sustainable manner. This paper looks at the status of assessment and monitoring for potential environmental effects associated with MRE projects around the world. Over 80 projects were identified worldwide as having been tested, demonstrated, or commercially deployed with associated environmental monitoring. Five of the projects that represent tidal stream, wave, and run of river projects are examined in more detail to determine the types of data and information collected for those projects, the outputs of the monitoring campaigns, and the actions taken as a result of the data collection and analysis. Recommendations are provided for standardization of the monitoring approaches, instruments, and analysis methods at MRE project sites worldwide.

marine renewable energy, environmental effects, ri↗

W Photoprotection in Tropical Marine Organisms

Increasing levels of ultraviolet (UV) radiation reaching the earth's surface which results from stratospheric ozone depletions could have serious implications for terrestrial plants and for aquatic organisms within the euphotic zone. A documented 9% decline in ozone at mid-latitudes is considered to produce a 12% increase in harmful UV radiation. The biologically damaging effects of higher UV levels, particularly W-B (280-320 rim), could manifest earlier in the tropics because of the relative thinness of the earth's equatorial ozone layer. Tropical marine organisms are also living close to their upper tolerance levels of water temperature, However, despite the large potential effects on plants and animals, little is known about UV effects on tropical ecosystems. Long-term ecological studies are needed to quantify the effects of increased UV radiation on terrestrial and marine ecosystems and to produce reliable data for prediction. Plants have developed several mechanisms to protect themselves from harmful UV radiation, one of which is the production of secondary leaf pigments that absorb W-B radiation (screening pigments). A higher concentration of screening pigments (e.g. flavonoids) in leaves may be interpreted as a natural response to increased W radiation. If higher concentrations of flavonoids filter out the excessive W radiation, no damage will occur, as suggested by Caldwell et al. (1989) and Tevini (1993). Failure to screen all W-B may result in deleterious effects on photosynthesis, plant genetic material, and plant and leaf morphology and growth. Eventually this will have an impact on ecosystem processes, structure, species composition, and productivity. This paper describes an ongoing project that is assessing the responses of mangroves, seagrasses and corals to W radiation by studying pigment concentrations, biophysical parameters, and variations in spectral reflectance in the field and in W-reduction experiments. Preliminary results on the distribution of W-absorbing flavonoid compounds in red mangroves (Rhizophora mangle) and the seagrass Thalassia testudinum, are presented. This research also provides, for the first time, a permanent record of daily W irradiance measurements at a tropical -location.

Armstrong, Roy A.↗

Design and Assessment of a Novel Approach for Ecosystem Warming Experiments in High‐Energy Tidal Wetlands

Abstract Coastal salt marshes have an important role in climate change adaptation and mitigation. Direct and indirect responses to warming are expected to vary along the marsh elevation gradient, making ecosystem responses to warming at this marine‐terrestrial ecotone uncertain. The Marsh Ecosystem Response to Increased Temperatures (MERIT) experiment was established in 2018 on the North Sea coast of Germany. Experimental plots are evenly distributed over three elevational marsh zones (pioneer, low marsh, and high marsh) and include three temperature treatments (ambient, +1.5°C, +3.0°C). MERIT's novel design combines active warming (horizontal surface warming cables and vertical soil warming pins) with passive, partially covered domes. For performance assessment, temperature deltas between ambient and warmed plots were calculated and evaluated at seasonal, daily, and diurnal timescales. We used Linear Mixed Models with Residual Maximum Likelihood for evaluating warming treatment effects and constraining environmental factors. MERIT was effective at ecosystem warming in this high‐energy environment both above‐ and belowground. Mixed models show that warming treatment dominates temperature differences belowground and at the soil surface, along with factors such as wind speed, flooding duration, and solar radiation. Aboveground warming was lower than belowground warming, but the dome design minimized issues seen in other open‐top chamber experiments. The combination of passive aboveground warming with feedback‐controlled active surface and belowground heating provides a setup for understanding warming effects on tidal ecosystems without altering the natural impacts of wind, radiation, and tidal inundations at high‐energy coastlines. Our design creates opportunities to expand future warming experiments to remote locations and technically challenging environments.

Environmental Sciences & Ecology↗

Electroactive biofilms: how microbial electron transfer enables bioelectrochemical applications

Abstract Microbial biofilms are ubiquitous. In marine and freshwater ecosystems, microbe–mineral interactions sustain biogeochemical cycles, while biofilms found on plants and animals can range from pathogens to commensals. Moreover, biofouling and biocorrosion represent significant challenges to industry. Bioprocessing is an opportunity to take advantage of biofilms and harness their utility as a chassis for biocommodity production. Electrochemical bioreactors have numerous potential applications, including wastewater treatment and commodity production. The literature examining these applications has demonstrated that the cell–surface interface is vital to facilitating these processes. Therefore, it is necessary to understand the state of knowledge regarding biofilms’ role in bioprocessing. This mini-review discusses bacterial biofilm formation, cell–surface redox interactions, and the role of microbial electron transfer in bioprocesses. It also highlights some current goals and challenges with respect to microbe-mediated bioprocessing and future perspectives.

59 BASIC BIOLOGICAL SCIENCES↗

An Overview of the Aerosol and Clouds-Convection-Precipitation Study (A-CCP) and its Relationship to the Geostationary AC-VC

The 2017 Decadal Survey (DS) highlighted Earth System Science themes, science and application questions, and several high priority objectives that have led to the inclusion of Aerosols (A) and Clouds-Convection-Precipitation (CCP) as Designated Observables (DOs) The aerosol-related science questions outlined by the DS focus on two major themes: 1) Climate Variability and Change and 2) Weather and Air Quality. The Aerosol mission observables targeted to address these major objectives may potentially contribute to three additional themes: 3) Marine and Terrestrial Ecosystems, 4) Global Hydrological Cycle, and 5) Earth Surface and Interior; this study will examine these linkages.In response to NASA's Designated Observables Guidance for Multi-Center Study Plans released on June 1, 2018, GSFC, LaRC, JPL, MSFC, GRC and ARC submitted Study Plan to the NASA Earth Science Division for the Aerosol (A) and Cloud, Convection, and Precipitation (CCP) Pre-formulation Study (A-CCP). The DS recognized the science merit in combining the A and CCP DOs for both enhancing the ability to address a number of Most Important (MI) objectives defined by the disciplinary panels and also to provide an expanded capability to address additional objectives beyond those addressed by individual DOs. The DS also identified Integrating Themes that can also be addressed through combinations of observables including potential combinations of DOs and the PoR. The combined A+CCP portion of this study will demonstrate how the combination of A and CCP observables will enhance the objectives of A and CCP individually, while providing the ability to expand the DS objectives addressed, and will closely connect to the A and CCP studies being performed in parallel. A critical element of the A-CCP observing strategy is to make extensive use of the so-called Program-of-Record (PoR). In this regard, the Geostationary Atmospheric Composition Virtual Constellation consisting of the GEMS, TEMPO and SENTINEL-4 and other relevant geostationary assets will provide a critical foundation for A-CCP. In this talk we will discuss how the A-CCP measurements contributes to air-quality and the geostationary constellation, and conversely, how the geostationary constellation helps answering fundamental A-CCP science objectives.

Da Silva, Arlindo↗