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At least 181 records · Page 10

Intial orbit determination results for Jason-1: towards a 1-cm orbit

The U.S/France Jason-1 oceanographic mission is carrying state-of-the-art radiometric tracking systems (GPS and Doris) to support precise orbit determination (POD) requirements. The performance of the systems is strongly reflected in the early POD results. Results of both internal and external (e.g., satellite laser ranging) comparisons support that the 2.5 cm radial Rh4S requirement is being readily met, and provide reasons for optimism that 1 cm can be achieved. We discuss the POD strategy underlying these orbits, as well as the challenging issues that bear on the understanding and characterization of an orbit solution at the l-cm level. We also describe a system for producing science quality orbits in near real time in order to support emerging applications in operational oceanography.

Jason-1 oceanography orbits real time↗

Ocean Surface Topography Data Products and Tools

The Physical Oceanography Distributed Active Archiving Center (PO.DAAC), NASA's primary data center for archiving and distributing oceanographic data, is supporting the Jason and TOPEX/Poseidon satellite tandem missions by providing a variety of data products, tools, and distribution methods to the wider scientific and general community. PO.DAAC has developed several new data products for sea level residual measurements, providing a longterm climate data record from 1992 to the present These products provide compatible measurements of sea level residuals for the entire time series including the tandem TOPEX/Poseidon and Jason mission. Several data distribution tool. are available from NASA PO.DAAC. The Near-Real-Time Image Distribution Server (NEREIDS) provides quicklook browse images and binary data files The PO.DAAC Ocean ESIP Tool (POET) provides interactive, on-tine data subsetting and visualization for several altimetry data products.

Jason 1↗

Ocean Surface Vector Wind: Research Challenges and Operational Opportunities

The atmosphere and ocean are joined together over seventy percent of Earth, with ocean surface vector wind (OSVW) stress one of the linkages. Satellite OSVW measurements provide estimates of wind divergence at the bottom of the atmosphere and wind stress curl at the top of the ocean; both variables are critical for weather and climate applications. As is common with satellite measurements, a multitude of OSVW data products exist for each currently operating satellite instrument. In 2012 the Joint Technical Commission on Oceanography and Marine Meteorology (JCOMM) launched an initiative to coordinate production of OSVW data products to maximize the impact and benefit of existing and future OSVW measurements in atmospheric and oceanic applications. This paper describes meteorological and oceanographic requirements for OSVW data products; provides an inventory of unique data products to illustrate that the challenge is not the production of individual data products, but the generation of harmonized datasets for analysis and synthesis of the ensemble of data products; and outlines a vision for JCOMM, in partnership with other international groups, to assemble an international network to share ideas, data, tools, strategies, and deliverables to improve utilization of satellite OSVW data products for research and operational applications.

Joint Technical Commission on Oceanography and Mar↗

Discriminating Phytoplankton Functional Types (PFTs) in the Coastal Ocean Using the Inversion Algorithm Phydotax and Airborne Imaging Spectrometer Data

There is a need in the Biological Oceanography community to discriminate among phytoplankton groups within the bulk chlorophyll pool to understand energy flow through ecosystems, to track the fate of carbon in the ocean, and to detect and monitor-for harmful algal blooms (HABs). The ocean color community has responded to this demand with the development of phytoplankton functional type (PFT) discrimination algorithms. These PFT algorithms fall into one of three categories depending on the science application: size-based, biogeochemical function, and taxonomy. The new PFT algorithm Phytoplankton Detection with Optics (PHYDOTax) is an inversion algorithm that discriminates taxon-specific biomass to differentiate among six taxa found in the California Current System: diatoms, dinoflagellates, haptophytes, chlorophytes, cryptophytes, and cyanophytes. PHYDOTax was developed and validated in Monterey Bay, CA for the high resolution imaging spectrometer, Spectroscopic Aerial Mapping System with On-board Navigation (SAMSON - 3.5 nm resolution). PHYDOTax exploits the high spectral resolution of an imaging spectrometer and the improved spatial resolution that airborne data provides for coastal areas. The objective of this study was to apply PHYDOTax to a relatively lower resolution imaging spectrometer to test the algorithm's sensitivity to atmospheric correction, to evaluate capability with other sensors, and to determine if down-sampling spectral resolution would degrade its ability to discriminate among phytoplankton taxa. This study is a part of the larger Hyperspectral Infrared Imager (HyspIRI) airborne simulation campaign which is collecting Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imagery aboard NASA's ER-2 aircraft during three seasons in each of two years over terrestrial and marine targets in California. Our aquatic component seeks to develop and test algorithms to retrieve water quality properties (e.g. HABs and river plumes) in both marine and in-land water bodies. Results presented are from the 10 April 2013 overflight of the Monterey Bay region and focus primarily on the first objective - sensitivity to atmospheric correction. On-going and future work will continue to evaluate if PHYDOTax can be applied to historical (SeaWiFS and MERIS), existing (MODIS, VIIRS, and HICO), and future (PACE, GEO-CAPE, and HyspIRI) satellite sensors. Demonstration of cross-platform continuity may aid in calibration and validation efforts of these sensors.

Biological Oceanography↗

(abstract) SIR-C/X-SAR: A Multifaceted Radar

The Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SAR-C/X-SAR) was a joint US/German/Italian project, with flights aboard the shuttle Endeavor in April and October 1994. SIR-C/X-SAR is the first spaceborne multifrequency, multipolarization radar. The SIR-C and the X-SAR were designed to operate in conjunction with each other, collecting data over common sites. Scientists around the world are using the data in conjunction with ground measurements to conduct experiments relating to Earth's ecology, geology, hydrology, and oceanography. In addition, the data are the most comprehensive set yet available for engineering characterization of spaceborne SAR capabilities relative to various radar phenomenology and methodology. Preliminary results show changes between missions in vegetation, ice, snow, flooding, and volcano activity.

imaging↗

MITgcm-AD v2: Open source tangent linear and adjoint modeling framework for the oceans and atmosphere enabled by the Automatic Differentiation tool Tapenade

The Massachusetts Institute of Technology General Circulation Model (MITgcm) is widely used by the climate science community to simulate planetary atmosphere and ocean circulations. A defining feature of the MITgcm is that it has been developed to be compatible with an algorithmic differentiation (AD) tool, TAF, enabling the generation of tangent-linear and adjoint models. These provide gradient information which enables dynamics-based sensitivity and attribution studies, state and parameter estimation, and rigorous uncertainty quantification. Importantly, gradient information is essential for computing comprehensive sensitivities and performing efficient large-scale data assimilation, ensuring that observations collected from satellites and in-situ measuring instruments can be effectively used to optimize a large uncertain control space. As a result, the MITgcm forms the dynamical core of a key data assimilation product employed by the physical oceanography research community: Estimating the Circulation and Climate of the Ocean (ECCO) state estimate. Although MITgcm and ECCO are used extensively within the research community, the AD tool TAF is proprietary and hence inaccessible to a large proportion of these users. The new version 2 (MITgcm-AD v2) framework introduced here is based on the source-to-source AD tool Tapenade, which has recently been open-sourced. Another feature of Tapenade is that it stores required variables by default (instead of recomputing them) which simplifies the implementation of efficient, AD-compatible code. The framework has been integrated with the MITgcm model’s main branch and is now freely available.

Adjoints↗

Debunking common myths in coastal circulation modeling

Despite tremendous progress in algorithm development, computational efficiency and transition into operations over the past two decades, coastal modeling still lacks scientific rigor due to proliferation of many ‘gray’ areas related to various modeling choices made by modelers. Here, in this paper, we propose some guiding principles for the modeling community to improve performance, and we also debunk commonly held myths that make the coastal modeling lack rigor. Using our own experience in developing seamless cross-scale unstructured-grid based models for the past two decades, we describe in unprecedented detail the end-to-end modeling process (i.e., from digital elevation models (DEMs) to mesh generation to post analysis), and demonstrate that defensible modeling is within reach for any end user by following three guiding principles: (1) Bathymetry is a first order forcing in coastal domains and thus should be respected in all aspects of modeling; (2) Oceanographic processes are driven across multiple spatial scales and so models should enable appropriate resolution as needed; and (3) Model assessment should focus on physical processes. Through qualitative and quantitative model assessments, we demonstrate the fundamental role played by bathymetry/topography as embedded in DEMs in making the results defensible, which is unfortunately glossed over in many modeling studies. Focusing on process-based assessment simplifies the calibration process. A major conclusion of this work is that model developers and operators should maximize the scientific rigor for in silico oceanography by avoiding some common pitfalls that rely on error compensation at the expense of representation of physical system processes. We present some best practice procedures for defensive and trustworthy numerical modeling.

54 ENVIRONMENTAL SCIENCES↗

Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days

In the version of this article initially published, two errors in authorship were made. First, Tatiana Rynearson of the School of Oceanography, University of Rhode Island was mistakenly omitted from the final author list. Second, Kurt LaButti of the Joint Genome Institute was mistakenly omitted from the final author list and replaces Alicia Clum due to a staffing change at the Joint Genome Institute. These authorship omissions were not identified until after the work had been published. We are updating the authorship to appropriately recognize the contributions of these authors. The error has been corrected in the PDF and HTML versions of the article.

59 BASIC BIOLOGICAL SCIENCES↗

Data and scripts associated with “Non-random processes impacting organic matter chemistry are maximized in mid-order streams”

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the publication “Non-random processes impacting organic matter chemistry are maximized in mid-order streams” submitted to Limnology and Oceanography (L&O) by Danczak et al. (in review). This package contains data and scripts used to investigate dissolved organic matter (DOM) molecular chemistry and diversification processes across 47 surface-water sampling sites in the Yakima River Basin, Washington, USA, during an August 2021 sampling campaign. The package contains analyses of ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS), geochemical measurements, geospatial attributes, molecular diversity, and meta-metabolome ecological null models needed to reproduce the main manuscript results. The underlying field data were pulled from exising data packages at https://doi.org/10.15485/1892052 (Fulton et al., 2022) and https://doi.org/10.15485/1898914 (Grieger et al., 2022). For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. We thank the following organizations for providing access to field locations for sample collection: the United States Forest Service, Washington Department of Fish and Wildlife, Washington Department of Natural Resources, the Confederated Tribes and Bands of the Yakama Nation, and the Cowiche Canyon Conservatory. Research was conducted under Washington State Parks and Recreation Commission Scientific Research Permit #210901. We are grateful to the Yakama Nation Tribal Council and Yakama Nation Fisheries for their collaboration in facilitating sample collection and ensuring data usage aligns with their values and worldview. This data package contains an R-Markdown file for analyses and five folders: (1) Data, (2) Geospatial Data, (3) Supplemental_Files, (5) Figures_pdf, (4) and src. The Data folder contains tabular inputs and derived files used in the manuscript analysis. The Geospatial Data folder contains climate and water-balance, hydrologic, land-cover, population/regional water-use, stream, topographic, and stream-order attribute CSV files. The src folder contains scripts used to process data, run analyses, and generate figures. The Figures_pdf folder contains manuscript figure outputs. The Supplemental_Files folder contains supplemental analysis products. All files are .csv, .pdf, .html, .png, .R, .Rmd, .svg, or .tre. This data package is associated with the rcfsa-RC2-SPS_Null_Modeling repository found at https://github.com/river-corridors-sfa/rcfsa-RC2-SPS_Null_Modeling.

54 ENVIRONMENTAL SCIENCES↗

EPCAPE-Dalhousie Field Campaign Report

This project supported the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE), which aimed to characterize the extent, radiative properties, aerosol interactions, and precipitation of stratocumulus clouds in the Eastern Pacific coastal region of La Jolla, California. Given the frequent anthropogenic aerosols emitted into this region, characterization of this important coastal cloud region and the aerosol impact on the cloud characteristics will improve the understanding of aerosol indirect effects and its representation in global climate models. This specific project deployed the fog droplet monitor (FM-120, Droplet Measurement Technologies) at the Scripps Institution of Oceanography’s Mt. Soledad site from 16 February 2023 to 15 February 2024. This instrument measured droplet number size spectra between 2 and 50 microns, from which droplet number concentration, liquid water content, and effective diameter were calculated. These measurements will be used to characterize the seasonal variability of clouds at Mt. Soledad and investigate differences in cloud properties under regional polluted and clean marine conditions. The collected data will soon be posted as part of the digital collection for EPCAPE data hosted by the University of California, San Diego (Russell et al. 2023).

54 ENVIRONMENTAL SCIENCES↗

EPCAPE Mt. Soledad In Situ Ozone Field Campaign Report

The focus of the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) is to characterize the extent, radiative properties, aerosol interactions, and precipitation characteristics of stratocumulus clouds in the Eastern Pacific Ocean across all four seasons at a coastal location, the Scripps Pier and the Scripps Institution of Oceanography Mt. Soledad sites in La Jolla, California. An important enhancement in support of this study was the measurement of ozone at the Scripps Mt. Soledad site to help in distinguishing in situ sampling of air parcels originating from regional polluted and clean marine sources.

54 ENVIRONMENTAL SCIENCES↗

Challenges of open data in aquatic sciences: issues faced by data users and data providers

Free use and redistribution of data (i.e., Open Data) increases the reproducibility, transparency, and pace of aquatic sciences research. However, barriers to both data users and data providers may limit the adoption of Open Data practices. Here, we describe common Open Data challenges faced by data users and data providers within the aquatic sciences community (i.e., oceanography, limnology, hydrology, and others). These challenges were synthesized from literature, authors’ experiences, and a broad survey of 174 data users and data providers across academia, government agencies, industry, and other sectors. Through this work, we identified seven main challenges: 1) metadata shortcomings, 2) variable data quality and reusability, 3) open data inaccessibility, 4) lack of standardization, 5) authorship and acknowledgement issues 6) lack of funding, and 7) unequal barriers around the globe. Our key recommendation is to improve resources to advance Open Data practices. This includes dedicated funds for capacity building, hiring and maintaining of skilled personnel, and robust digital infrastructures for preparation, storage, and long-term maintenance of Open Data. Further, to incentivize data sharing we reinforce the need for standardized best practices to handle data acknowledgement and citations for both data users and data providers. We also highlight and discuss regional disparities in resources and research practices within a global perspective.

54 ENVIRONMENTAL SCIENCES↗

Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and has potential for contributing to ocean ecology and biogeochemical studies. A blinded multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. Euphotic zone samples from the Bermuda Atlantic Time-series Study (BATS) in the North Atlantic Ocean collected by in situ pumps and the autonomous underwater vehicle (AUV) Clio were distributed with a paired metagenome, and one-dimensional (1D) liquid chromatographic data-dependent acquisition mass spectrometry analysis was stipulated. Analysis of mass spectra from seven laboratories through a common bioinformatic pipeline identified a shared set of 1056 proteins from 1395 shared peptide constituents. Quantitative analyses showed good reproducibility: pairwise regressions of spectral counts between laboratories yielded R 2 values averaged 0.62±0.11, and a Sørensen similarity analysis of the top 1000 proteins revealed 70 %–80 % similarity between laboratory groups. Taxonomic and functional assignments showed good coherence between technical replicates and different laboratories. A bioinformatic intercomparison study, involving 10 laboratories using eight software packages, successfully identified thousands of peptides within the complex metaproteomic datasets, demonstrating the utility of these software tools for ocean metaproteomic research. Lessons learned and potential improvements in methods were described. Future efforts could examine reproducibility in deeper metaproteomes, examine accuracy in targeted absolute quantitation analyses, and develop standards for data output formats to improve data interoperability. Together, these results demonstrate the reproducibility of metaproteomic analyses and their suitability for microbial oceanography research, including integration into global-scale ocean surveys and ocean biogeochemical models.

59 BASIC BIOLOGICAL SCIENCES↗

Multifrequency radar observations of marine clouds during the EPCAPE campaign

The Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) was a year-round campaign conducted by the US Department of Energy at the Scripps Institution of Oceanography in La Jolla, CA, USA, with a focus on characterizing atmospheric processes at a coastal location. The ground-based prototype of a new Ka-, W-, and G-band (35.75, 94.88, and 238.8 GHz) profiling atmospheric radar, named CloudCube, which was developed at the Jet Propulsion Laboratory, took part in the experiment during 6 weeks in March and April 2023. This article describes the unique data sets that were obtained during the field campaign from a variety of marine clouds and light precipitation. These are, to the best of the authors' knowledge, the first observations of atmospheric clouds using simultaneous multifrequency measurements including 238.8 GHz. These data sets therefore provide an exceptional opportunity to study and analyze hydrometeors with diameters in the millimeter- and submillimeter size range that can be used to better understand cloud and precipitation structure, formation, and evolution. The data sets referenced in this article are intended to provide a complete, extensive, and high-quality collection of G-band data in the form of Doppler spectra and Doppler moments. In addition, Ka-band and W-band reflectivity and Ka-, W-, and G-band reflectivity ratio profiles are included for several cases of interest on 6 different days.

54 ENVIRONMENTAL SCIENCES↗