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At least 181 records · Page 10

Structural evolution of small ruthenium cluster anions

The structures of ruthenium cluster anions have been investigated using a combination of trapped ion electron diffraction and density functional theory computations in the size range from eight to twenty atoms. In this size range, three different structural motifs are found: Ru{sub 8}{sup −}–Ru{sub 12}{sup −} have simple cubic structures, Ru{sub 13}{sup −}–Ru{sub 16}{sup −} form double layered hexagonal structures, and larger clusters form close packed motifs. For Ru{sub 17}{sup −}, we find hexagonal close packed stacking, whereas octahedral structures occur for Ru{sub 18}{sup −}–Ru{sub 20}{sup −}. Our calculations also predict simple cubic structures for the smaller clusters Ru{sub 4}{sup −}–Ru{sub 7}{sup −}, which were not accessible to electron diffraction measurements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NEAR-INFRARED K AND L' FLUX RATIOS IN SIX LENSED QUASARS

We examine the wavelength dependence of flux ratios for six gravitationally lensed quasars using K and L' images obtained at the Gemini North 8 m telescope. We select lenses with source redshifts z{sub s} < 2.8 so that K-band images probe rest-frame optical emission from accretion disks, while L'-band images probe rest-frame near-infrared flux emitted (in part) from the more extended surrounding torus. Since the observations correspond to different source sizes, the K and L' flux ratios are sensitive to structure on different scales and may be useful for studying small structure in the lens galaxies. Four of the six lenses show differences between K and L' flux ratios. In HE 0435-1223, SDSS 0246-0825, and HE 2149-2745, the differences may be attributable to known microlensing and/or intrinsic variability. In SDSS 0806+2006, the wavelength dependence is not easily attributed to known variations and may indicate the presence of substructure. By contrast, in Q0142-100 and SBS 0909+523 the K and L' flux ratios are consistent within the uncertainties. We discuss the utility of the current data for studying chromatic effects related to microlensing, dust extinction, and dark matter substructure.

79 ASTRONOMY AND ASTROPHYSICS↗

Relating structure and composition with accessibility of a single catalyst particle using correlative 3-dimensional micro-spectroscopy

To understand how hierarchically structured functional materials operate, analytical tools are needed that can reveal small structural and chemical details in large sample volumes. Often, a single method alone is not sufficient to get a complete picture of processes happening at multiple length scales. Here we present a correlative approach combining three-dimensional X-ray imaging techniques at different length scales for the analysis of metal poisoning of an individual catalyst particle. The correlative nature of the data allowed establishing a macro-pore network model that interprets metal accumulations as a resistance to mass transport and can, by tuning the effect of metal deposition, simulate the response of the network to a virtual ageing of the catalyst particle. In conclusion, the developed approach is generally applicable and provides an unprecedented view on dynamic changes in a material’s pore space, which is an essential factor in the rational design of functional porous materials.

36 MATERIALS SCIENCE↗

Detecting and Testing for Structural Error in Computer Models with Application to the Community Atmospheric Model

Bayesian calibration/inversion methods for uncertain input parameters to simulation codes have generated an increasing amount of interest in the climate community in the recent years. This approach uses multiple disparate observational datasets related to the output of the simulator of interest to yield a probabilistic constraint on the uncertain inputs (i.e. probability distribution). A major challenge in applying Bayesian calibration methods to simulation codes is related to the possible presence of a large structural error in the output fields of interest; that is, the presence of discrepancy between the observed and the simulated output that is neither explained by the uncertainty in the inputs nor the observations. We present here methods to test for and visualize structural error in an ensemble of input-perturbed simulations. The methods are based on bootstrap (resmpling) test statistics and well-known metrics to quantify the difference between two probability distributions. The proposed methods are demonstrated using selected precipitation output fields of the Community Atmospheric Model (CAM), which are compared to observations provided by the Global Precipitation Climatology Project (GPCP). The methods are found to be useful in identifying regions and seasons with a large structural error. The proposed structural error detection methodology can be used to screen multiple observational datasets of interest for structural error, making it possible to retain only the datasets with a small structural error for use in Bayesian calibration. In addition, information about the amount of structural error can be valuable to model developers.

58 GEOSCIENCES↗

Pendant Group Modifications Provide Graft Copolymer Silicones with Exceptionally Broad Thermomechanical Properties

Graft copolymers offer a versatile platform for the design of self-assembling materials; however, simple strategies for precisely and independently controlling the thermomechanical and morphological properties of graft copolymers remain elusive. Here, using a library of 92 polynorbornene-graft-polydimethylsiloxane (PDMS) copolymers, we discover a versatile backbone-pendant sequence-control strategy that addresses this challenge. Small structural variations of pendant groups, e.g., cyclohexyl versus n-hexyl, of small-molecule comonomers have dramatic impacts on order-to-disorder transitions, glass transitions, mechanical properties, and morphologies of statistical and block silicone-based graft copolymers, providing an exceptionally broad palette of designable materials properties. For example, statistical graft copolymers with high PDMS volume fractions yielded unbridged body-centered cubic morphologies that behaved as soft plastic crystals. By contrast, lamellae-forming graft copolymers provided robust, yet reprocessable silicone thermoplastics (TPs) with transition temperatures spanning over 160 °C and elastic moduli as high as 150 MPa despite being both unentangled and un-cross-linked. Altogether, this study reveals a new pendant-group-mediated self-assembly strategy that simplifies graft copolymer synthesis and enables access to a diverse family of silicone-based materials, setting the stage for the broader development of self-assembling materials with tailored performance specifications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Modular reflector concept study

The feasibility was studied of constructing large space structures, specifically a 100 meter paraboloidal R.F. reflector, by individually deploying a number of relatively small structural modules, and then joining them to form a single large structure in orbit. The advantage of this approach is that feasibility of a large antenna may be demonstrated by ground and flight tests of several smaller and less costly subelements. Thus, initial development costs are substantially reduced and a high degree of reliability can be obtained without commitment to construction of a very large system. The three candidate structural concepts investigated are: (1) the deployable cell module; (2) the paraboloidal extendable truss antenna adapted to modular assembly; and (3) the modular extendable truss antenna (META).

Vaughan, D. H.↗

Effects of Noncovalent Interactions on High-Spin Fe(IV)–Oxido Complexes

High-valent nonheme Fe IV –oxido species are key intermediates in biological oxidation, and their properties are proposed to be influenced by the unique microenvironments present in protein active sites. Microenvironments are regulated by noncovalent interactions, such as hydrogen bonds (H-bonds) and electrostatic interactions; however, there is little quantitative information about how these interactions affect crucial properties of high valent metal–oxido complexes. To address this knowledge gap, we introduced a series of Fe IV –oxido complexes that have the same S = 2 spin ground state as those found in nature and then systematically probed the effects of noncovalent interactions on their electronic, structural, and vibrational properties. The key design feature that provides access to these complexes is the new tripodal ligand [poat] 3– , which contains phosphinic amido groups. An important structural aspect of [Fe IV poat(O)] - is the inclusion of an auxiliary site capable of binding a Lewis acid (LA II ); we used this unique feature to further modulate the electrostatic environment around the Fe–oxido unit. Experimentally, studies confirmed that H-bonds and LA II s can interact directly with the oxido ligand in Fe IV –oxido complexes, which weakens the Fe=O bond and has an impact on the electronic structure. Additionally, we found that relatively large vibrational changes in the Fe–oxido unit correlate with small structural changes that could be difficult to measure, especially within a protein active site. Our work demonstrates the important role of noncovalent interactions on the properties of metal complexes, and that these interactions need to be considered when developing effective oxidants.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

High Strength and Deformation Mechanisms of A l0.3 CoCrFeNi High-Entropy Alloy Thin Films Fabricated by Magnetron Sputtering

Recently, high-entropy alloy thin films (HEATFs) with nanocrystalline structures and high hardness were developed by magnetron sputtering technique and have exciting potential to make small structure devices and precision instruments with sizes ranging from nanometers to micrometers. However, the strength and deformation mechanisms are still unclear. In this work, nanocrystalline Al0.3CoCrFeNi HEATFs with a thickness of ~4 μm were prepared. The microstructures of the thin films were comprehensively characterized, and the mechanical properties were systematically studied. It was found that the thin film was smooth, with a roughness of less than 5 nm. The chemical composition of the high entropy alloy thin film was homogeneous with a main single face-centered cubic (FCC) structure. Furthermore, it was observed that the hardness and the yield strength of the high-entropy alloy thin film was about three times that of the bulk samples, and the plastic deformation was inhomogeneous. Our results could provide an in-depth understanding of the mechanics and deformation mechanism for future design of nanocrystalline HEATFs with desired properties.

36 MATERIALS SCIENCE↗

F Ring Core Stability: Corotation Resonance Plus Antiresonance

The decades-or-longer stability of the narrow F Ring core in a sea of orbital chaos appears to be due to an unusual combination of traditional corotation resonance and a novel kind of "antiresonance". At a series of specific locations in the F Ring region, apse precession between synodic encounters with Prometheus allows semimajor axis perturbations to promptly cancel before significant orbital period changes can occur. This cancellation fails for particles that encounter Prometheus when it is near its apoapse, especially during periods of antialignment of its apse with that of the F Ring. At these times, the strength of the semimajor axis perturbation is large (tens of km) and highly nonsinusoidal in encounter longitude, making it impossible to cancel promptly on a subsequent encounter and leading to chaotic orbital diffusion. Only particles that consistently encounter Prometheus away from its apoapse can use antiresonance to maintain stable orbits, implying that the true mean motion nF of the stable core must be defined by a corotational resonance of the form nF = nP(-kappa)P/m, where (nP, kappaP) are Prometheus' mean motion and epicycle frequency. To test this hypothesis we used the fact that Cassini RSS occultations only sporadically detect a "massive" F Ring core, composed of several-cm-and-larger particles. We regressed the inertial longitudes of 24 Cassini RSS (and VGR) detections and 43 nondetections to a common epoch, using a comb of candidate nP, and then folded them modulo the anticipated m-number of the corotational resonance (Prometheus m = 110 outer CER), to see if clustering appears. We find the "true F Ring core" is actually arranged in a series of short longitudinal arcs separated by nearly empty longitudes, orbiting at a well determined semimajor axis of 140222.4 km (from 2005-2012 at least). Small particles seen by imaging and stellar occultations spread quickly in azimuth and obscure this clumpy structure. Small chaotic variations in the mean motion and/or apse longitude of Prometheus quickly become manifest in the F Ring core, and we suggest that the core must adapt to these changes for the F Ring to maintain stability over timescales of decades and longer

Cassini RSS occultations↗

Monitoring the Formation and Reactivity of Organometallic Alkane and Fluoroalkane Complexes with Silanes and Xe Using Time-Resolved X-ray Absorption Fine Structure Spectroscopy

Complexes with weakly coordinating ligands are often formed in chemical reactions and can play key roles in determining the reactivity, particularly in catalytic reactions. Using time-resolved X-ray absorption fine structure (XAFS) spectroscopy in combination with time-resolved IR (TRIR) spectroscopy and tungsten hexacarbonyl, W(CO) 6 , we are able to structurally characterize the formation of an organometallic alkane complex, determine the W–C distances, and monitor the reactivity with silane to form an organometallic silane complex. Experiments in perfluorosolvents doped with xenon afford initially the corresponding solvated complex, which is sufficiently reactive in the presence of Xe that we can then observe the coordination of Xe to the metal center, providing a unique insight into the metal–xenon bonding. These results offer a step toward elucidating the structure, bonding, and chemical reactivity of transient species by X-ray absorption spectroscopy, which has sensitivity to small structural changes. The XAFS results indicate that the bond lengths of metal–alkane (W–H–C) bond in W(CO) 5 (heptane) as 3.07 (±0.06) Å, which is longer than the calculated W–C (2.86 Å) for binding of the primary C–H, but shorter than the calculated W–C (3.12 Å) for the secondary C–H. Here, a statistical average of the calculated W–C alkane bond lengths is 3.02 Å, and comparison of this value indicates that the value derived from the XAFS measurements is averaged over coordination of all C–H bonds consistent with alkane chain walking. Photolysis of W(CO) 6 in the presence of HSiBu 3 allows the conversion of W(CO) 5 (heptane) to W(CO) 5 (HSiBu 3 ) with an estimated W–Si distance of 3.20 (±0.03) Å. Time-resolved TRIR and XAFS experiments following photolysis of W(CO) 6 in perfluoromethylcyclohexane (PFMCH) allows the characterization of W(CO) 5 (PFMCH) with a W–F distance of 2.65 (±0.06) Å, and doping PFMCH with Xe allows the characterization of W(CO) 5 Xe with a W–Xe bond length of 3.10 (±0.02) Å.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Fragment-based determination of a proteinase K structure from MicroED data using ARCIMBOLDO_SHREDDER

Structure determination of novel biological macromolecules by X-ray crystallography can be facilitated by the use of small structural fragments, some of only a few residues in length, as effective search models for molecular replacement to overcome the phase problem. Independence from the need for a complete pre-existing model with sequence similarity to the crystallized molecule is the primary appeal of ARCIMBOLDO , a suite of programs which employs this ab initio algorithm for phase determination. Here, the use of ARCIMBOLDO is investigated to overcome the phase problem with the electron cryomicroscopy (cryoEM) method known as microcrystal electron diffraction (MicroED). The results support the use of the ARCIMBOLDO_SHREDDER pipeline to provide phasing solutions for a structure of proteinase K from 1.6 Å resolution data using model fragments derived from the structures of proteins sharing a sequence identity of as low as 20%. ARCIMBOLDO_SHREDDER identified the most accurate polyalanine fragments from a set of distantly related sequence homologues. Alternatively, such templates were extracted in spherical volumes and given internal degrees of freedom to refine towards the target structure. Both modes relied on the rotation function in Phaser to identify or refine fragment models and its translation function to place them. Model completion from the placed fragments proceeded through phase combination of partial solutions and/or density modification and main-chain autotracing using SHELXE . The combined set of fragments was sufficient to arrive at a solution that resembled that determined by conventional molecular replacement using the known target structure as a search model. This approach obviates the need for a single, complete and highly accurate search model when phasing MicroED data, and permits the evaluation of large fragment libraries for this purpose.

59 BASIC BIOLOGICAL SCIENCES↗

Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering

The structures of RNA:RNA complexes regulate many biological processes. Despite their importance, protein-free RNA:RNA complexes represent a tiny fraction of experimentally determined structures. Here, we describe a joint small-angle X-ray and neutron scattering (SAXS/SANS) approach to structurally interrogate conformational changes in a model RNA:RNA complex. Using SAXS, we measured the solution structures of the individual RNAs and of the overall RNA:RNA complex. With SANS, we demonstrate, as a proof of principle, that isotope labeling and contrast matching (CM) can be combined to probe the bound state structure of an RNA within a selectively deuterated RNA:RNA complex. Furthermore, we show that experimental scattering data can validate and improve predicted AlphaFold 3 RNA:RNA complex structures to reflect its solution structure. In conclusion, our work demonstrates that in silico modeling, SAXS, and CM-SANS can be used in concert to directly analyze conformational changes within RNAs when in complex, enhancing our understanding of RNA structure in functional assemblies.

HIV-1 dimerization initiation site↗

Plasma gradient effets on doubel-probe measurements in the magnetosphere

The effects on double-probe electric field measurements induced by electron density and temperature gradients are investigated. We show that on some occasions such gradients may lead to marked spurious electric fields if the probes are assumed to lie at the same probe potential with repect to the plasma. The use of a proper bias current will decrease the magnitude of such an error. When the probes are near the plasma potential, the magnitude of these error signals, delta Epsilon, can vary as delta Epsilon approx. T(sub e)(Delta n(sub e)/n(sub e)) + 0.5 Delta T(sub e), where T(sub e) is the electron temperature, Delta n(sub e)/ n(sub e) the relative electron density variation between the two sensors, and Delta T(sub e) the electron temperature difference between the two sensors. This not only implies that the error signals will increase linearly with the density variations but also that such signatures grow with Delta T(sub e) i.e., such effects are 10 times larger in a 10-eV plasma than in a 1-eV plasma. This type of error is independent of the probe separation distance provided the gradient scale length is much larger than the distance. The largest errors occur when the probes are near to the plasma potential. During the crossing of a small structure (e.g, a double layer) the error signal appears as a bipolar signature. Our analysis shows that errors in double-probe measurements caused by plasma gradients are not significant at large scale (much greater than 1 km) plasma boundaries, and may only be important in cases where small-scale (less than 1 km), internal gradient structures exist. Bias currents tailored for each plasma parameter regime (i.e., variable bias current) would improve the double-probe response to gradient effects considerably.

Laakso, Harri↗

Dynamically Disordered Lattice in a Layered Pb-I-SCN Perovskite Thin Film Probed by Two-Dimensional Infrared Spectroscopy

The dynamically flexible lattices in lead-halide perovskites may play important roles in extending carrier recombination lifetime in 3D perovskite solar-cell absorbers and in exciton self-trapping in 2D perovskite white-light phosphors. Here, two-dimensional infrared (2D IR) spectroscopy was applied to study a recently reported Pb-I-SCN layered perovskite. The Pb-ISCN perovskite was spin-coated on a SiO 2 surface as a thin film, with a thickness of ~100 nm, where the S 12 CN – anions were isotopically diluted with the ratio of S 12 CN:S 13 CN=5:95 or 1:99 to avoid vibrational coupling and excitation transfer between adjacent SCN – anions. The minor S 12 CN – component was the principal vibrational probe that reported on the structural evolution through 2D IR spectroscopy. Spectral diffusion was observed with a time constant of 4.1 ± 0.3 ps. Spectral diffusion arises from small structural changes that result in sampling of frequencies within the distribution of frequencies that comprise the inhomogeneously broadened absorption spectrum of the in the Pb-I-SCN layered perovskite. These transitions among discrete local structures are distinct from oscillatory phonon motions of the lattice. To accurately evaluate the structural dynamics through measurement of spectral diffusion, the vibrational coupling between adjacent SCN – anions had to be carefully treated. Although the inorganic layers of typical 2D perovskites are structurally isolated from each other, the 2D IR data demonstrated that the layers of the Pb-I-SCN perovskite are vibrationally coupled. When both S 12 CN – and S 13 CN – were pumped simultaneously, cross-peaks between S 12 CN and S 13 CN vibrations and an oscillating 2D band shape of the S 12 CN – vibration were observed. Both observables demonstrate vibrational coupling between the closest SCN – anions, which reside in different inorganic layers. The thin films and the isotopic dilution produced exceedingly small vibrational echo signal fields; measurements were made possible using the near-Brewster’s angle reflection pump-probe geometry.

14 SOLAR ENERGY↗

Dynamics of compressional Mach cones in a strongly coupled complex plasma

Using a Generalised-Hydrodynamic (GH) fluid model, we study the influence of strong coupling induced modification of the fluid compressibility on the dynamics of compressional Mach cones in a dusty plasma medium. A significant structural change of lateral wakes for a given Mach number and Epstein drag force is found in the strongly coupled regime. With the increase of fluid compressibility, the peak amplitude of the normalised perturbed dust density first increases and then decreases monotonically after reaching its maximum value. It is also noticed that the opening angle of the cone structure decreases with the increase of the compressibility of the medium and the arm of the Mach cone breaks up into small structures in the velocity vector profile when the coupling between the dust particles increases.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗