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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2012

WAVEMOTH-FAST SPHERICAL HARMONIC TRANSFORMS BY BUTTERFLY MATRIX COMPRESSION

We present Wavemoth, an experimental open source code for computing scalar spherical harmonic transforms (SHTs). Such transforms are ubiquitous in astronomical data analysis. Our code performs substantially better than existing publicly available codes owing to improvements on two fronts. First, the computational core is made more efficient by using small amounts of pre-computed data, as well as paying attention to CPU instruction pipelining and cache usage. Second, Wavemoth makes use of a fast and numerically stable algorithm based on compressing a set of linear operators in a pre-computation step. The resulting SHT scales as O(L{sup 2}log{sup 2} L) for the resolution range of practical interest, where L denotes the spherical harmonic truncation degree. For low- and medium-range resolutions, Wavemoth tends to be twice as fast as libpsht, which is the current state-of-the-art implementation for the HEALPix grid. At the resolution of the Planck experiment, L {approx} 4000, Wavemoth is between three and six times faster than libpsht, depending on the computer architecture and the required precision. Because of the experimental nature of the project, only spherical harmonic synthesis is currently supported, although adding support for spherical harmonic analysis should be trivial.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

REMOVING BARYON-ACOUSTIC-OSCILLATION PEAK SHIFTS WITH LOCAL DENSITY TRANSFORMS

Large-scale bulk flows in the universe distort the initial density field, broadening the baryon-acoustic-oscillation (BAO) feature that was imprinted when baryons were strongly coupled to photons. Additionally, there is a small shift inward in the peak of the conventional overdensity correlation function, a mass-weighted statistic. This shift occurs when high-density peaks move toward each other. We explore whether this shift can be removed by applying to the density field a transform (such as a logarithm) that gives fairer statistical weight to fluctuations in underdense regions. Using configuration-space perturbation theory in the Zel'dovich approximation, we find that the log-density correlation function shows a much smaller inward shift in the position of the BAO peak at low redshift than is seen in the overdensity correlation function. We also show that if the initial, Lagrangian density of matter parcels could be estimated at their Eulerian positions, giving a displaced-initial-density field, its peak shift would be even smaller. In fact, a transformed field that accentuates underdensities, such as the reciprocal of the density, pushes the peak the other way, outward. In our model, these shifts in the peak position can be attributed to shift terms, involving the derivative of the linear correlation function, that entirely vanish in this displaced-initial-density field.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Of Actors, Cities and Energy Systems: Advancing the Transformative Potential of Urban Electrification

The electrification of transportation and the integration of electric vehicles (EVs) with buildings connected to clean grids has been touted as one of the key solutions to the global decarbonization challenge. Cities are on the frontlines of current and future electrification, as they depend on and drive electricity generation, distribution, and use. City actors also occupy a central role in the actions to enable electrification to support energy transitions in efficient, equitable, environmentally sound, and resilient ways. Currently, however, research and development on the interactions between actors, cities and energy systems is predominantly conducted in disciplinary siloes. This topical review analyzes the transformational potential of urban electrification. It focuses on efforts to electrify transportation and integrate EVs with buildings connected to a clean grid. We find that actions in these area are driving change; they are adopted by wealthier populations and on an experimental basis by specific communities. Their larger-scale growth is constrained by institutional, behavioral, and infrastructural factors. We also find that existing siloed disciplinary approaches are often incompatible with advancing holistic research. To achieve that, divergent communities of scholars need to come together to integrate their research and create broader perspectives. Through incorporation of the social sciences, these perspectives need to consider the societal limits and potentials brought to bear by human behavior and decision making. Only then can urban electrification be understood as the empirically rich and socially complex topic that it is. And only with this understanding will innovations and smart policy actions be able to tap into the transformational potential of urban electrification.

cities↗
DOE OSTI2023

A gated graph transformer for protein complex structure quality assessment and its performance in CASP15

Abstract Motivation Proteins interact to form complexes to carry out essential biological functions. Computational methods such as AlphaFold-multimer have been developed to predict the quaternary structures of protein complexes. An important yet largely unsolved challenge in protein complex structure prediction is to accurately estimate the quality of predicted protein complex structures without any knowledge of the corresponding native structures. Such estimations can then be used to select high-quality predicted complex structures to facilitate biomedical research such as protein function analysis and drug discovery. Results In this work, we introduce a new gated neighborhood-modulating graph transformer to predict the quality of 3D protein complex structures. It incorporates node and edge gates within a graph transformer framework to control information flow during graph message passing. We trained, evaluated and tested the method (called DProQA) on newly-curated protein complex datasets before the 15th Critical Assessment of Techniques for Protein Structure Prediction (CASP15) and then blindly tested it in the 2022 CASP15 experiment. The method was ranked 3rd among the single-model quality assessment methods in CASP15 in terms of the ranking loss of TM-score on 36 complex targets. The rigorous internal and external experiments demonstrate that DProQA is effective in ranking protein complex structures. Availability and implementation The source code, data, and pre-trained models are available at https://github.com/jianlin-cheng/DProQA.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Quenching, bursting, and galaxy shapes: colour transformation as a function of morphology

ABSTRACT Different mechanisms for quenching star formation in galaxies are commonly invoked in the literature, but the relative impact of each one at different cosmic epochs is still unknown. In particular, the relation between these processes and morphological transformation remains poorly understood. In this work, we measure the effectiveness of changes in star formation rates by analysing a new parameter, the Star Formation Acceleration (SFA), as a function of galaxy morphology. This methodology is capable of identifying both bursting and quenching episodes that occurred in the preceding 300 Myr. We use morphological classification catalogues based on Deep Learning techniques. Our final sample has ∼14 200 spirals and ∼2500 ellipticals. We find that elliptical galaxies in the transition region have median shorter quenching time-scales (τ < 1 Gyr) than spirals (τ ≥ 1 Gyr). This result conforms to the scenario in which major mergers and other violent processes play a fundamental role in galaxy evolution for most ellipticals, not only quenching star formation more rapidly but also playing a role in morphological transformation. We also find that ∼two-thirds of galaxies bursting in the green valley in our sample are massive spirals ($M_\star \ge 10^{11.0}\, \mathrm{M}_\odot$) with signs of disturbance. This is in accordance with the scenario where low-mass galaxies are losing their gas in an interaction with a massive galaxy: while the former is quenching, the last is being refueled and going through a burst, showing signs of recent interaction.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Mapping variations of redshift distributions with probability integral transforms

We present a method for mapping variations between probability distribution functions and apply this method within the context of measuring galaxy redshift distributions from imaging survey data. This method, which we name PITPZ for the probability integral transformations it relies on, uses a difference in curves between distribution functions in an ensemble as a transformation to apply to another distribution function, thus transferring the variation in the ensemble to the latter distribution function. This procedure is broadly applicable to the problem of uncertainty propagation. In the context of redshift distributions, for example, the uncertainty contribution due to certain effects can be studied effectively only in simulations, thus necessitating a transfer of variation measured in simulations to the redshift distributions measured from data. We illustrate the use of PITPZ by using the method to propagate photometric calibration uncertainty to redshift distributions of the Dark Energy Survey Year 3 weak lensing source galaxies. For this test case, we find that PITPZ yields a lensing amplitude uncertainty estimate due to photometric calibration error within 1 per cent of the truth, compared to as much as a 30 per cent underestimate when using traditional methods.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Towards an astronomical foundation model for stars with a transformer-based model

ABSTRACT Rapid strides are currently being made in the field of artificial intelligence using transformer-based models like Large Language Models (LLMs). The potential of these methods for creating a single, large, versatile model in astronomy has not yet been explored. In this work, we propose a framework for data-driven astronomy that uses the same core techniques and architecture as used by LLMs. Using a variety of observations and labels of stars as an example, we build a transformer-based model and train it in a self-supervised manner with cross-survey data sets to perform a variety of inference tasks. In particular, we demonstrate that a single model can perform both discriminative and generative tasks even if the model was not trained or fine-tuned to do any specific task. For example, on the discriminative task of deriving stellar parameters from Gaia XP spectra, we achieve an accuracy of 47 K in Teff, 0.11 dex in log g, and 0.07 dex in [M/H], outperforming an expert XGBoost model in the same setting. But the same model can also generate XP spectra from stellar parameters, inpaint unobserved spectral regions, extract empirical stellar loci, and even determine the interstellar extinction curve. Our framework demonstrates that building and training a single foundation model without fine-tuning using data and parameters from multiple surveys to predict unmeasured observations and parameters is well within reach. Such ‘Large Astronomy Models’ trained on large quantities of observational data will play a large role in the analysis of current and future large surveys.

Leung, Henry W. (ORCID:0000000200362752)↗
DOE OSTI2024

CovTransformer: A transformer model for SARS-CoV-2 lineage frequency forecasting

With hundreds of SARS-CoV-2 lineages circulating in the global population, there is an ongoing need for predicting and forecasting lineage frequencies and thus identifying rapidly expanding lineages. Accurate prediction would allow for more focused experimental efforts to understand pathogenicity of future dominating lineages and characterize the extent of their immune escape. Here, we first show that the inherent noise and biases in lineage frequency data make a commonly-used regression-based approach unreliable. To address this weakness, we constructed a machine learning model for SARS-CoV-2 lineage frequency forecasting, called CovTransformer, based on the transformer architecture. We designed our model to navigate challenges such as a limited amount of data with high levels of noise and bias. We first trained and tested the model using data from the UK and the USA, and then tested the generalization ability of the model to many other countries and US states. Remarkably, the trained model makes accurate predictions two months into the future with high levels of accuracy both globally (in 31 countries with high levels of sequencing effort) and at the US-state level. Our model performed substantially better than a widely used forecasting tool, the multinomial regression model implemented in Nextstrain, demonstrating its utility in SARS-CoV-2 monitoring. Assuming a newly emerged lineage is identified and assigned, our test using retrospective data shows that our model is able to identify the dominating lineages 7 weeks in advance on average before they became dominant. Overall, our work demonstrates that transformer models represent a promising approach for SARS-CoV-2 forecasting and pandemic monitoring.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Neutrino Flavor Transformation in Neutron Star Mergers

Here, we present the first numerical relativity simulations including neutrino flavor transformations that could result from flavor instabilities, quantum many-body effects, or potential beyond standard model physics in neutron star mergers. We find that neutrino flavor transformations impact the composition and structure of the remnant, potentially leaving an imprint on the postmerger gravitational-wave signal. They also have a significant impact on the composition and nucleosynthesis yields of the ejecta.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Photoionization microscopy in terms of local-frame-transformation theory

Two-photon ionization of an alkali-metal atom in the presence of a uniform electric field is investigated using a standardized form of the local-frame-transformation and generalized quantum defect theory. Here, the relevant long-range quantum defect parameters in the combined Coulombic plus Stark potential are calculated with eigenchannel R-matrix theory applied in the downstream parabolic coordinate η. The present formulation permits us to express the corresponding microscopy observables through the local frame transformation, and it gives a critical test of the accuracy of the Harmin-Fano theory.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2015

Optimal mode transformations for linear-optical cluster-state generation

In this paper, we analyze the generation of linear-optical cluster states (LOCSs) via sequential addition of one and two qubits. Existing approaches employ the stochastic linear-optical two-qubit controlled-Z (CZ) gate with success rate of 1/9 per operation. The question of optimality of the CZ gate with respect to LOCS generation has remained open. We report that there are alternative schemes to the CZ gate that are exponentially more efficient and show that sequential LOCS growth is indeed globally optimal. We find that the optimal cluster growth operation is a state transformation on a subspace of the full Hilbert space. Finally, we show that the maximal success rate of postselected entangling n photonic qubits or m Bell pairs into a cluster is (1/2) n-1 and (1/4) m-1 , respectively, with no ancilla photons, and we give an explicit optical description of the optimal mode transformations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

Generalized local-frame-transformation theory for excited species in external fields

A rigorous theoretical framework is developed for a generalized local-frame-transformation theory (GLFT). The GLFT is applicable to the following systems: Rydberg atoms or molecules in an electric field and negative ions in any combination of electric and/or magnetic fields. A first test application to the photoionization spectra of Rydberg atoms in an external electric field demonstrates dramatic improvement over the first version of the local- frame-transformation theory developed initially by U. Fano [Phys. Rev. A 24, 619 (1981)] and D. A. Harmin [Phys. Rev. A 26, 2656 (1982)]. This revised GLFT theory yields nontrivial corrections because it now includes the full on-shell Hilbert space without adopting the truncations in the original theory. Comparisons of the semianalytical GLFT Stark spectra with ab initio numerical simulations yield errors in the range of a few tens of MHz, an improvement over the original Fano-Harmin theory, whose errors are 10–100 times larger. Furthermore, our analysis provides a systematic pathway to precisely describe the corresponding photoabsorption spectra that should be accurate enough to meet most modern experimental standards.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2018

Simple Stochastic Model of Multiparticle Battery Electrodes Undergoing Phase Transformations

Incorporation of ions into battery electrodes can lead to phase transformations. When multiparticle phase-transforming electrodes charge or discharge, two processes must occur in each particle: the new phase must nucleate, and then grow until the particle is fully charged or discharged. A fundamental question is which of these two processes is rate limiting. Here in this paper, we construct a simple stochastic model that shows how the relative rate of nucleation compared with growth determines the particle state-of-charge distributions in the electrode. We find that the number of particles that are partially charged at any time increases as the relative nucleation rate increases. The maximum number of particles that are actively charging occurs just before the time when the first particles are becoming completely charged. By comparing measured state-of-charge distributions with the model, we determine the relative rate of nucleation. We apply this procedure to measurements of the evolution of particles in LiFePO 4 cathodes and show we can account for the particle state-of-charge distribution as a function of the electrode state of charge.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2022

Comparison of the canonical transformation and energy functional formalisms for ab initio calculations of self-localized polarons

In materials with strong electron-phonon (e-ph) interactions, charge carriers can distort the surrounding lattice and become trapped, forming self-localized (small) polarons. We recently developed an ab initio approach based on canonical transformations to efficiently compute the formation and energetics of small polarons A different approach based on a Landau-Pekar energy functional has been proposed in the recent literature. Here in this work, we analyze and compare these two methods in detail. We show that the small polaron energy is identical in the two formalisms when using the same polaron wave function. We also show that our canonical transformation formalism can predict polaron band structures and can properly treat zero- and finite-temperature lattice vibration effects, although at present using a fixed polaron wave function. Conversely, the energy functional approach can compute the polaron wave function, but as we show here, it neglects lattice vibrations and cannot address polaron self-localization and thermal band narrowing. Taken together, this work relates two different methods developed recently to study polarons from first-principles, highlighting their merits and shortcomings and discussing them both in a unified formalism.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Transformer quantum state: A multipurpose model for quantum many-body problems

Here, inspired by the advancements in large language models based on transformers, we introduce the transformer quantum state (TQS): a versatile machine learning model for quantum many-body problems. In sharp contrast to Hamiltonian/task specific models, TQS can generate the entire phase diagram, predict field strengths with experimental measurements, and transfer such a knowledge to new systems it has never been trained on before, all within a single model. With specific tasks, fine-tuning the TQS produces accurate results with small computational cost. Versatile by design, TQS can be easily adapted to new tasks, thereby pointing towards a general-purpose model for various challenging quantum problems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2015

C 60 -induced Devil's Staircase transformation on a Pb/Si(111) wetting layer

Density functional theory is used to study structural energetics of Pb vacancy cluster formation on C 60 /Pb/Si(111) to explain the unusually fast and error-free transformations between the “Devil's Staircase” (DS) phases on the Pb/Si(111) wetting layer at low temperature (~110K). The formation energies of vacancy clusters are calculated in C 60 /Pb/Si(111) as Pb atoms are progressively ejected from the initial dense Pb wetting layer. Vacancy clusters larger than five Pb atoms are found to be stable with seven being the most stable, while vacancy clusters smaller than five are highly unstable, which agrees well with the observed ejection rate of ~5 Pb atoms per C 60 . Furthermore, the high energy cost (~0.8 eV) for the small vacancy clusters to form indicates convincingly that the unusually fast transformation observed experimentally between the DS phases, upon C 60 adsorption at low temperature, cannot be the result of single-atom random walk diffusion but of correlated multi-atom processes.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2016

Titanium α-ω phase transformation pathway and a predicted metastable structure

A titanium is a highly utilized metal for structural lightweighting and its phases, transformation pathways (transition states), and structures have scientific and industrial importance. Using a proper solid-state nudged elastic band method employing two climbing images combined with density functional theory DFT + U methods for accurate energetics, we detail the pressure-induced α (ductile) to ω (brittle) transformation at the coexistence pressure. We also find two transition states along the minimal-enthalpy path and discover a metastable body-centered orthorhombic structure, with stable phonons, a lower density than the end-point phases, and decreasing stability with increasing pressure.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2019

Non-Abelian bosonization and modular transformation approach to superuniversality

Quantum Hall inter-plateau transitions are physical exemplars of quantum phase transitions. Near each of these transitions, the measured electrical conductivity scales with the same correlation length and dynamical critical exponents, i.e., the critical points are superuniversal. In apparent contradiction to these experiments, prior theoretical studies of quantum Hall phase transitions within the framework of Abelian Chern-Simons theory coupled to matter found correlation length exponents that depend on the value of the quantum critical Hall conductivity. Here, we use non-Abelian bosonization and modular transformations to theoretically study the phenomenon of superuniversality. Specifically, we introduce a new effective theory that has an emergent U(N) gauge symmetry with any N > 1 for a quantum phase transition between an integer quantum Hall state and an insulator. We then use modular transformations to generate from this theory effective descriptions for transitions between a large class of fractional quantum Hall states whose quasiparticle excitations have Abelian statistics. We find the correlation length and dynamical critical exponents are independent of the particular transition within a controlled 't Hooft large N expansion, i.e., superuniversal! Furthermore, we argue that this superuniversality could survive away from this controlled large N limit using recent duality conjectures.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

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