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A Principal Component and Machine Learning Approach to Spatially Gap Fill Hyperspectral Ocean Color Satellite Retrievals

Retrievals of ocean color properties from space are important for monitoring the health of the ocean ecosystem but such retrievals tend to be limited in spatial coverage due to conditions such as clouds, aerosols, and sun glint. Gap filling of ocean color retrievals is typically performed by combining retrievals from multiple satellites or temporally averaging multiple days of retrievals but despite these techniques large gaps still exist posing challenges for near real time monitoring of events like harmful algae blooms. To address these limitations, we propose a spatial gap filling approach using machine learning to learn how to perform an atmospheric correction under challenging retrieval conditions. In this approach a principal component analysis is used to decompose the hyperspectral measurements into spectral features that describe the scattering and absorption of the atmosphere as well as the underlying surface. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from a standard ocean color algorithm such as the MODIS atmospheric correction algorithm. This machine learning approach is independent of a priori information and does not rely on any radiative transfer modeling. We apply the approach to two hyperspectral UV/VIS instruments, the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can be used to estimate ocean color properties such as chlorophyll, remote sensing reflectance, and fluorescence line height. This method could be used as a gap-filling technique for the future Ocean Color Instrument (OCI) which will be onboard NASA's Plankton, Aerosol Cloud, ocean Ecosystem (PACE) ocean color satellite to provide additional information for monitoring the health of our global oceans. Additionally, it could be applied to the geostationary satellite Tropospheric Emissions: Monitoring of Pollution (TEMPO) to better understand diurnal variability in ocean ecology.

MODIS atmospheric correction algorithm↗

NASA NTRS1978

Ground temperature measurement by PRT-5 for maps experiment

A simple algorithm and computer program were developed for determining the actual surface temperature from the effective brightness temperature as measured remotely by a radiation thermometer called PRT-5. This procedure allows the computation of atmospheric correction to the effective brightness temperature without performing detailed radiative transfer calculations. Model radiative transfer calculations were performed to compute atmospheric corrections for several values of the surface and atmospheric parameters individually and in combination. Polynomial regressions were performed between the magnitudes or deviations of these parameters and the corresponding computed corrections to establish simple analytical relations between them. Analytical relations were also developed to represent combined correction for simultaneous variation of parameters in terms of their individual corrections.

Gupta, S. K.↗

NASA NTRS1982

Comparison of LANDSAT-2 and field spectrometer reflectance signatures of south Texas rangeland plant communities

The accuracy was assessed for an atmospheric correction method that depends on clear water bodies to infer solar and atmospheric parameters for radiative transfer equations by measuring the reflectance signature of four prominent south Texas rangeland plants with the LANDSAT satellite multispectral scanner (MSS) and a ground based spectroradiometer. The rangeland plant reflectances produced by the two sensors were correlated with no significant deviation of the slope from unity or of the intercept from zero. These results indicated that the atmospheric correction produced LANDSAT MSS estimates of rangeland plant reflectances that are as accurate as the ground based spectroradiometer.

Richardson, A. J.↗

NASA NTRS1980

Initial coastal zone color scanner imagery

The characteristics of the Nimbus-7 Coastal Zone Color Scanner are presented and the atmospheric correction and bio-optical algorithms are reviewed. Comparison of imagery before and after atmospheric correction shows that water features such as color fronts and small scale eddies can be retrieved even through a hazy and horizontally inhomogeneous atmosphere. Imagery is also presented to show that features revealed in color are sometimes completely absent from simultaneous thermal imagery implying that color and thermal imagery can provide complementary rather than redundant information.

Gordon, H. R.↗

NASA NTRS1983

LANDSAT data preprocessing

The effect on LANDSAT data of a Sun angle correction, an intersatellite LANDSAT-2 and LANDSAT-3 data range adjustment, and the atmospheric correction algorithm was evaluated. Fourteen 1978 crop year LACIE sites were used as the site data set. The preprocessing techniques were applied to multispectral scanner channel data and transformed data were plotted and used to analyze the effectiveness of the preprocessing techniques. Ratio transformations effectively reduce the need for preprocessing techniques to be applied directly to the data. Subtractive transformations are more sensitive to Sun angle and atmospheric corrections than ratios. Preprocessing techniques, other than those applied at the Goddard Space Flight Center, should only be applied as an option of the user. While performed on LANDSAT data the study results are also applicable to meteorological satellite data.

Austin, W. W.↗

NASA NTRS2019

Performance of Landsat-8 and Sentinel-2 Surface Reflectance Products for River Remote Sensing Retrievals of Chlorophyll-A and Turbidity

Rivers and other freshwater systems play a crucial role in ecosystems, industry, transportation and agriculture. Despite the more than 40 years of inland water observations made possible by optical remote sensing, a standardized reflectance product for inland waters is yet forthcoming. The aim of this work is to compare the standard USGS land surface reflectance product to two Landsat-8 and Sentinel-2 aquatic remote sensing reflectance products over the Amazon, Columbia and Mississippi rivers. Landsat-8 reflectance products from all three routines are then evaluated for their comparative performance in retrieving chlorophyll-a and turbidity in reference to shipborne, underway in situ validation measurements. The land surface product shows the best agreement (4 percent Mean Absolute Percent Difference) with field measurements of radiometry collected on the Amazon River and generates 36 percent higher reflectance values in the visible bands compared to aquatic methods (ACOLITE (Atmospheric Correction for OLI (Operational Land Imager) 'lite') and SeaDAS (Sea-viewing Wide Field-of-View Sensor (SeaWiFS) Data Analysis System)) with larger differences between land and aquatic products observed in Sentinel-2 (0.01 per steraradian) compared to Landsat-8 (0.001 per steraradian). Choice of atmospheric correction routine can bias Landsat-8 retrievals of chlorophyll-a and turbidity by as much as 59 percent and 35 percent respectively. Using a more restrictive time window for matching in situ and satellite imagery can reduce differences by 5–31 percent depending on correction technique. This work highlights the challenges of satellite retrievals over rivers and underscores the need for future optical and biogeochemical research aimed at improving our understanding of the absorbing and scattering properties of river water and their relationships to remote sensing reflectance.

Landsat-8↗

NASA NTRS1997

Ocean Observations with EOS/MODIS: Algorithm Development and Post Launch Studies

Significant accomplishments made during the present reporting period are as follows: (1) We developed a new method for identifying the presence of absorbing aerosols and, simultaneously, performing atmospheric correction. The algorithm consists of optimizing the match between the top-of-atmosphere radiance spectrum and the result of models of both the ocean and aerosol optical properties; (2) We developed an algorithm for providing an accurate computation of the diffuse transmittance of the atmosphere given an aerosol model. A module for inclusion into the MODIS atmospheric-correction algorithm was completed; (3) We acquired reflectance data for oceanic whitecaps during a cruise on the RV Ka'imimoana in the Tropical Pacific (Manzanillo, Mexico to Honolulu, Hawaii). The reflectance spectrum of whitecaps was found to be similar to that for breaking waves in the surf zone measured by Frouin, Schwindling and Deschamps, however, the drop in augmented reflectance from 670 to 860 nm was not as great, and the magnitude of the augmented reflectance was significantly less than expected; and (4) We developed a method for the approximate correction for the effects of the MODIS polarization sensitivity. The correction, however, requires adequate characterization of the polarization sensitivity of MODIS prior to launch.

Gordon, Howard R.↗

NASA NTRS2017

GEONEX: Land Monitoring From a New Generation of Geostationary Satellite Sensors

The latest generation of geostationary satellites carry sensors such as ABI (Advanced Baseline Imager on GOES-16) and the AHI (Advanced Himawari Imager on Himawari) that closely mimic the spatial and spectral characteristics of Earth Observing System flagship MODIS for monitoring land surface conditions. More importantly they provide observations at 5-15 minute intervals. Such high frequency data offer exciting possibilities for producing robust estimates of land surface conditions by overcoming cloud cover, enabling studies of diurnally varying local-to-regional biosphere-atmosphere interactions, and operational decision-making in agriculture, forestry and disaster management. But the data come with challenges that need special attention. For instance, geostationary data feature changing sun angle at constant view for each pixel, which is reciprocal to sun-synchronous observations, and thus require careful adaptation of EOS algorithms. Our goal is to produce a set of land surface products from geostationary sensors by leveraging NASA's investments in EOS algorithms and in the data/compute facility NEX. The land surface variables of interest include atmospherically corrected surface reflectances, snow cover, vegetation indices and leaf area index (LAI)/fraction of photosynthetically absorbed radiation (FPAR), as well as land surface temperature and fires. In order to get ready to produce operational products over the US from GOES-16 starting 2018, we have utilized 18 months of data from Himawari AHI over Australia to test the production pipeline and the performance of various algorithms for our initial tests. The end-to-end processing pipeline consists of a suite of modules to (a) perform calibration and automatic georeference correction of the AHI L1b data, (b) adopt the Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm to produce surface spectral reflectances along with compositing schemes and QA, and (c) modify relevant EOS retrieval algorithms (e.g., LAI and FPAR, GPP, etc.) for subsequent science product generation. Initial evaluation of Himawari AHI products against standard MODIS products indicate general agreement, suggesting that data from geostationary sensors can augment low earth orbit (LEO) satellite observations.

geostationary↗

NASA NTRS2018

Land Surface Reflectances from Geostationary Sensors

GEONEX is a processing pipeline that produces a suite of satellite land surface products using data streams from the latest geostationary (GEO) sensors including the GOES016/ABI and the Himawari-8/AHI. The suite, created collaboratively by scientists from NASA and NOAA, includes top-of-atmosphere (TOA) reflectances, land surface reflectances (LSRs), vegetation indices, LAI/fPAR, and other downstream products. As a key component of the GEONEX product processing, we have adapted the Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm to produce LSRs from the TOA data. Because the algorithm depends on building "stacks" of images, we first run internal geo-registration checks to ensure geo-spatial accuracy and consistency of the input (L1B) data before transferring them from the geostationary projection into a tile system in geographic grids. Scan-time is inferred from metadata and applied to calculate the sun-sensor angles for each grid cell. The MAIAC algorithm is run to detect clouds/shadows, estimate aerosol optical thickness (AOT), perform atmospheric corrections, and generate LSRs. We have processed 18-months (from 2016/04 onward) of AHI data over East Asia and Oceania at a 10-minute time step and 10-months (from 2018/01 onward) of ABI data over North and South Americas at a 15-minute time step. As a verification measure, we compare the GEONEX (AHI/ABI) surface reflectances with the standard MODIS products (MOD09GA) and the MODIS MAIAC products over pixels that have similar sun-view geometries. The results indicate general linear relationships between GEONEX and corresponding MODIS LSRs. In particular, the RMSEs between GEONEX and MOD09 data are comparable to those between MOD09 and MODIS MAIAC products, suggesting that the uncertainties of GEONEX LSRs fall into an acceptable range. However, direct comparisons of LSRs over pixels with different sun-view angles are not as straightforward and require more modeling efforts to correct the directional effects. Evaluation of such angular influences on the downstream products (e.g., vegetation indices) is also under investigation.

Geostationary satellite; Remote Sensing; Atmospher↗

NASA NTRS2020

Airborne Radiometry for Calibration, Validation, and Research in Oceanic, Coastal, and Inland Waters

Present-day ocean color satellite sensors, which principally provide reliable data on chlorophyll, sediments, and colored dissolved organic material in the open ocean, are not well suited for coastal and inland water studies for a variety of reasons, including coarse spatial and spectral resolution plus challenges with atmospheric correction. National Aeronautics and Space Administration (NASA) airborne mission concepts tested in 2011, 2013, 2017, and 2018 over Monterey Bay, CA, and nearby inland waters have demonstrated the feasibility of improving airborne monitoring and research activities in case-1 and case-2 aquatic ecosystems through the combined use of state-of-the-art above- and in-water measurement capabilities. These competencies have evolved through time to produce a sensor-web approach: imaging spectrometer, microradiometers, and a sun photometer (airborne) with their analogous algorithms, and with corresponding in-water radiometers and ground-based sun photometry. The NASA airborne instrument suite and mission concept demonstrations, leveraging high quality above- and in-water data, significantly improves the fidelity as well as the spatial and spectral resolution of observations for studying and monitoring water quality in oceanic, coastal, and inland water ecosystems. The goal of this series of projects was to develop and fly a portable airborne sensor suite for NASA science missions focusing on a gradient of water types from oligotrophic to turbid waters addressing the challenges of an optically complex coastal ocean zone and inland waters. The airborne radiometry in this range of aquatic conditions and sites has supported improved results of studies of water quality and biogeochemistry and provides capabilities for research areas such as ocean productivity and biogeochemistry; aquatic impacts of coastal landscape alteration; coastal, estuarine, and inland waters ecosystem productivity; atmospheric correction; and regional climate variability.

atmospheric correction↗

NASA NTRS2003

Stray-Light Correction of the Marine Optical Buoy

In ocean-color remote sensing, approximately 90% of the flux at the sensor originates from atmospheric scattering, with the water-leaving radiance contributing the remaining 10% of the total flux. Consequently, errors in the measured top-of-the atmosphere radiance are magnified a factor of 10 in the determination of water-leaving radiance. Proper characterization of the atmosphere is thus a critical part of the analysis of ocean-color remote sensing data. It has always been necessary to calibrate the ocean-color satellite sensor vicariously, using in situ, ground-based results, independent of the status of the pre-flight radiometric calibration or the utility of on-board calibration strategies. Because the atmosphere contributes significantly to the measured flux at the instrument sensor, both the instrument and the atmospheric correction algorithm are simultaneously calibrated vicariously. The Marine Optical Buoy (MOBY), deployed in support of the Earth Observing System (EOS) since 1996, serves as the primary calibration station for a variety of ocean-color satellite instruments, including the Sea-viewing Wide Field-of-view Sensor (SeaWiFS), the Moderate Resolution Imaging Spectroradiometer (MODIS), the Japanese Ocean Color Temperature Scanner (OCTS) , and the French Polarization and Directionality of the Earth's Reflectances (POLDER). MOBY is located off the coast of Lanai, Hawaii. The site was selected to simplify the application of the atmospheric correction algorithms. Vicarious calibration using MOBY data allows for a thorough comparison and merger of ocean-color data from these multiple sensors.

Brown, Steven W.↗

NASA NTRS2022

Determining the Primary Sources of Uncertainty in Retrieval of Marine Remote Sensing Reflectance From Satellite Ocean Color Sensors

Uncertainties in the retrieval of the remote sensing reflectance, R_rs, from Ocean Color (OC) satellite sensors have a strong impact on the performance of algorithms for the estimation of chlorophyll-a, mineral concentrations, and inherent optical properties (IOPs). The uncertainties are highest in the blue bands. The total radiance measured at the top of the atmosphere captures the instantaneous state of the atmosphere-ocean system: the in-water conditions, sky and Sun glint reflected from the wind-roughened ocean surface, as well as light scattered from molecules and aerosols in the atmosphere. Each of these components has associated uncertainties, and when combined with the additional uncertainties from the instrument noise and the atmospheric correction process, they contribute to the total uncertainty budget for the retrieved R_rs. We analyzed the contribution of each component uncertainties to the total R_rs uncertainties in SNPP-VIIRS level 2 products, taking advantage of the spectral differences between the components. We examined multiple scenes in the open ocean and coastal waters at spatial resolutions ranging from 2250 to 5250 m by comparing the retrieved R_rs to in situ measurements made at several AERONET-OC sites and at the MOBY site. It was shown that uncertainties associated with the molecular (Rayleigh) scattering play the most significant role, while the contributions of other components are usually smaller. Uncertainties in Rayleigh scattering are primarily attributed to the variability of Rayleigh optical thickness (ROT) with a standard deviation of approximately 1.5% of ROT, which can largely explain the frequency of negative R_rs retrievals as observed using the current standard atmospheric correction process employed by NASA. Variability of the sky light reflected from the ocean surface in some conditions also contributed to uncertainties in the blue; water variability proportional to R_rs had a very pronounced peak in the green at coastal sites.

remote sensing reflectance↗

NASA NTRS1983

Phytoplankton pigment concentrations in the Middle Atlantic Bight - Comparison of ship determinations and CZCS estimates

The processing algorithms used for relating the apparent color of the ocean observed with the Coastal-Zone Color Scanner on Nimbus-7 to the concentration of phytoplankton pigments (principally the pigment responsible for photosynthesis, chlorophyll-a) are developed and discussed in detail. These algorithms are applied to the shelf and slope waters of the Middle Atlantic Bight and also to Sargasso Sea waters. In all, four images are examined, and the resulting pigment concentrations are compared to continuous measurements made along ship tracks. The results suggest that over the 0.08-1.5 mg/cu m range, the error in the retrieved pigment concentration is of the order of 30-40% for a variety of atmospheric turbidities. In three direct comparisons between ship-measured and satellite-retrieved values of the water-leaving radiance, the atmospheric correction algorithm retrieved the water-leaving radiance with an average error of about 10%. This atmospheric correction algorithm does not require any surface measurements for its application.

Gordon, H. R.↗

NASA NTRS1998

Comparing the Ocean Color Measurements Between MOS and SeaWiFS: A Vicarious Intercalibration Approach for MOS

One of the primary goals of the NASA Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) project is to develop methods for meaningful comparison and possible merging of data products from multiple ocean color missions. The Modular Optoelectronic Scanner (MOS) is a German instrument that was launched in the spring of 1996 on the Indian IRS-P3 satellite. With the successful launch of NASA's Sea-viewing Wide Field-of-view Sensor (SeaWiFS) in the summer of 1997, there are now two ocean color missions in concurrent operation and there is interest within the scientific community to compare data from these two sensors. In this paper, we describe our efforts to retrieve ocean optical properties from both SeaWiFS and MOS using consistent methods. We first briefly review the atmospheric correction, which removes more than 90% of the observed radiances in the visible, and then describe how the atmospheric correction algorithm used for the SeaWiFS data can be modified for application to other ocean color sensors. Next, since the retrieved water-leaving radiances in the visible between MOS and SeaWiFS are significantly different, we developed a vicarious intercalibration method to recalibrate the MOS spectral bands based on the optical properties of the ocean and atmosphere derived from the coincident SeaWiFS measurements. We present and discuss the MOS retrieved ocean optical properties before and after the vicarious calibration, and demonstrate the efficacy of this approach. We show that it is possible and efficient to vicariously intercalibrate sensors between one and another.

Wang, Menghua↗

NASA NTRS2023

Sea Surface Temperature Gradients Estimation Using Top-of-Atmosphere Observations from the ESA Earth Explorer 10 Harmony Mission: Preliminary Studies

The Harmony satellite mission was recently approved as the next European Space Agency (ESA) Earth Explorer 10. The mission science objectives cover several applications related to solid earth, the cryosphere, upper-ocean dynamics and air–sea interactions. The mission consists of a constellation of two satellites, flying with the Copernicus Sentinel 1 (C or D) spacecraft, each hosting a C-band receive-only radar and a thermal infrared (TIR) payload. From an ocean dynamics/air–sea interaction perspective, the mission will provide the unique opportunity to observe simultaneously the signature of submesoscale upper-ocean processes via synthetic aperture radar and TIR imagery. The TIR imager is based on microbolometer technology and its acquisitions will rely on four channels: three narrow-band channels yielding observations at a ≃1 km spatial sampling distance (SSD) and a panchromatic (PAN, 8–12 μm) channel characterized by a ≃300 m SSD. Our study investigates the potential of Harmony in retrieving spatial features related to sea surface temperature (SST) gradients from the high-resolution PAN channel, relying on top-of-atmosphere (TOA) observations. Compared to a standard SST gradient retrieval, our approach does not require atmospheric correction, thus avoiding uncertainties due to inter-channel co-registration and radiometric consistency, with the possibility of exploiting the higher resolution of the PAN channel. The investigations were carried out simulating the future Harmony TOA radiances (TARs), as well as relying on existing state-of-the-art level 1 satellite products. Our approach enables the correct description of SST features at the sea surface avoiding the generation of spurious features due to atmospheric correction and/or instrumental issues. In addition, analyses based on existing satellite products suggest that the clear-sky TOA observations, in a typical mid-latitude scene, allow the reconstruction of up to 85% of the gradient magnitudes found at the sea-surface level. The methodology is less efficient in tropical areas, suffering from smoothing effects due to the high concentrations of water vapor.

sea surface temperature (SST)↗

NASA NTRS1977

Agricultural resources investigations in northern Italy and southern France, Agreste project. Part 1: Activity performed on the Italian test sites

The author has identified the following significant results. It was found that the standard atmospheric correction procedure cannot be successfully applied to water targets if a better correlation of MSS data with radiance input to LANDSAT sensors was not reached. It was confirmed that the six line effect must be avoided unless more sophisticated data handling techniques allow subtraction of various amounts of path radiance for the six satellite detectors. The COPTRAN program for atmospheric corrections of scan angle influence on atmospheric path was modified and completed. Six rice varieties were discriminated in proportions ranging from 65 percent to more than 80 percent. The same techniques were applied to poplar groves with a 70 percent precision.

Source record↗

NASA NTRS2012

Optical Sensors for Planetary Radiant Energy (OSPREy): Calibration and Validation of Current and Next-Generation NASA Missions

A principal objective of the Optical Sensors for Planetary Radiance Energy (OSPREy) activity is to establish an above-water radiometer system as a lower-cost alternative to existing in-water systems for the collection of ground-truth observations. The goal is to be able to make high-quality measurements satisfying the accuracy requirements for the vicarious calibration and algorithm validation of next-generation satellites that make ocean color and atmospheric measurements. This means the measurements will have a documented uncertainty satisfying the established performance metrics for producing climate-quality data records. The OSPREy approach is based on enhancing commercial-off-the-shelf fixed-wavelength and hyperspectral sensors to create hybridspectral instruments with an improved accuracy and spectral resolution, as well as a dynamic range permitting sea, Sun, sky, and Moon observations. Greater spectral diversity in the ultraviolet (UV) will be exploited to separate the living and nonliving components of marine ecosystems; UV bands will also be used to flag and improve atmospheric correction algorithms in the presence of absorbing aerosols. The short-wave infrared (SWIR) is expected to improve atmospheric correction, because the ocean is radiometrically blacker at these wavelengths. This report describes the development of the sensors, including unique capabilities like three-axis polarimetry; the documented uncertainty will be presented in a subsequent report.

Hooker, Stanford B.↗

NASA NTRS2008

Mapping Snow Grain Size over Greenland from MODIS

This paper presents a new automatic algorithm to derive optical snow grain size (SGS) at 1 km resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) measurements. Differently from previous approaches, snow grains are not assumed to be spherical but a fractal approach is used to account for their irregular shape. The retrieval is conceptually based on an analytical asymptotic radiative transfer model which predicts spectral bidirectional snow reflectance as a function of the grain size and ice absorption. The analytical form of solution leads to an explicit and fast retrieval algorithm. The time series analysis of derived SGS shows a good sensitivity to snow metamorphism, including melting and snow precipitation events. Preprocessing is performed by a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which includes gridding MODIS data to 1 km resolution, water vapor retrieval, cloud masking and an atmospheric correction. MAIAC cloud mask (CM) is a new algorithm based on a time series of gridded MODIS measurements and an image-based rather than pixel-based processing. Extensive processing of MODIS TERRA data over Greenland shows a robust performance of CM algorithm in discrimination of clouds over bright snow and ice. As part of the validation analysis, SGS derived from MODIS over selected sites in 2004 was compared to the microwave brightness temperature measurements of SSM\I radiometer, which is sensitive to the amount of liquid water in the snowpack. The comparison showed a good qualitative agreement, with both datasets detecting two main periods of snowmelt. Additionally, MODIS SGS was compared with predictions of the snow model CROCUS driven by measurements of the automatic whether stations of the Greenland Climate Network. We found that CROCUS grain size is on average a factor of two larger than MODIS-derived SGS. Overall, the agreement between CROCUS and MODIS results was satisfactory, in particular before and during the first melting period in mid-June. Following detailed time series analysis of SGS for four permanent sites, the paper presents SGS maps over the Greenland ice sheet for the March-September period of 2004.

Lyapustin, Alexei↗