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At least 199 records · Page 11

Scanning Probe Microscopy in the Information Age

Scanning probe microscopy (SPM) has brought scientific exploration, visualization, and control to nanoscale. A plethora of measurement approaches and techniques devised around SPM enabled probing structure and functionalities crucial for virtually all areas of science. While high-resolution electron microscopy techniques preceded scanning probes, SPM effectively opened the door to probing the structure–property relationship on length scales spanning 100s of micrometers down to a single atom. As the complexity of the material systems and the scientific questions increased, so too did the SPM techniques. Substantial efforts have been dedicated toward the development of better instrumentation platforms, probes, and novel spectroscopic measurements; however, many opportunities related to data processing and acquisition in SPM are just being realized now. This chapter will describe the recent progress in data-driven SPM by giving a broad overview of the field, the foundation of the scanning tunneling microscope (STM) and the atomic force microscope (AFM), as well as a description behind the operating principles and dynamic modes. A comprehensive overview of the multi-frequency techniques, Band excitation, and general acquisition mode SPM is given, setting the context for the application of big data, machine learning, and artificial intelligence in the field of dynamic SPM.

Collins, Liam↗

Machine Learning and Social Media to Mine and Disseminate Big Scientific Data

One of the challenges in supplying the communities with wider access to scientific databases is the need for knowledge of database languages like Structured Query Language (SQL). Although the SQL language has been published in many forms, not everybody is able to write SQL queries. Another challenge is that it might not be practical to make the public aware of the structure of databases. There is a need for novice users to query relational databases using their natural language. To solve this problem, many natural language interfaces to structured databases have been developed. The goal is to provide a more intuitive method for generating database queries and delivering responses. Through social media, which makes it possible to interact with a wide section of the population, and with the help of natural language processing, researchers at the Atmospheric Radiation Measurement (ARM) Data Center at Oak Ridge National Laboratory (ORNL) have developed a concept to enable easy search and retrieval of data from several environmental data centers for the scientific community through social media.Using a machine learning framework that maps natural language text to thousands of datasets, instruments, variables, and data streams, the prototype system would allow users to request data through Twitter and receive a link (via tweet) to applicable data results on the project's search catalog tailored to their key words. This automated identification of relevant data from various petascale archives at ORNL could increase convenience, access, and use of the project's data by the broader community. In this paper we discuss how some data-intensive projects at ORNL are using innovative ways to help in data discovery.

Devarakonda, Ranjeet↗

Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates

Deep phylogeny involving arthropod lineages is difficult to recover because the erosion of phylogenetic signals over time leads to unreliable multiple sequence alignment (MSA) and subsequent phylogenetic reconstruction. One way to alleviate the problem is to assemble a large number of gene sequences to compensate for the weakness in each individual gene. Such an approach has led to many robustly supported but contradictory phylogenies. A close examination shows that the supermatrix approach often suffers from two shortcomings. The first is that MSA is rarely checked for reliability and, as will be illustrated, can be poor. The second is that, to alleviate the problem of homoplasy at the third codon position of protein-coding genes due to convergent evolution of nucleotide frequencies, phylogeneticists may remove or degenerate the third codon position but may do it improperly and introduce new biases. We performed extensive reanalysis of one of such “big data” sets to highlight these two problems, and demonstrated the power and benefits of correcting or alleviating these problems. Our results support a new group with Xiphosura and Arachnopulmonata (Tetrapulmonata + Scorpiones) as sister taxa. This favors a new hypothesis in which the ancestor of Xiphosura and the extinct Eurypterida (sea scorpions, of which many later forms lived in brackish or freshwater) returned to the sea after the initial chelicerate invasion of land. Our phylogeny is supported even with the original data but processed with a new “principled” codon degeneration. We also show that removing the 1673 codon sites with both AGN and UCN codons (encoding serine) in our alignment can partially reconcile discrepancies between nucleotide-based and AA-based tree, partly because two sequences, one with AGN and the other with UCN, would be identical at the amino acid level but quite different at the nucleotide level.

59 BASIC BIOLOGICAL SCIENCES↗

An Interactive Visualization Tool for Large-Scale Building Stock Modeling

Recent advancements in data science and high-performance computing are making it easier to run millions of building simulations, but meaningful visualization of such large datasets remains a challenge. This paper presents a new tool developed to view the results of large-scale OpenStudio simulations of national, regional, or local building stocks. The tool processes millions of simulations to calculate measure savings, utility bills, carbon emissions, primary energy, and cost-effectiveness metrics at a high geographic resolution. Interactive visualizations of the building characteristics, consumption, and measure savings data include proportional symbol maps and histogram plots and can be filtered by any building characteristic.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

End-System Aware Peak Link Utilization Transport for Big Data Transfer over Dedicated Connections

High-performance networks provisioning 10/40-Gbps dedicated channels have been rapidly developed andincreasingly deployed to support big data transfers on the order of terabytes or petabytes in large-scale network-intensiveapplications. However, end users have not seen corresponding increase in application throughput mainly because traditional end-to-end transport methods are not optimized for such connections. New congestion or flow control mechanisms are desirable to meet the challenges brought to transport protocol design by dedicated connections. The advent and proliferation of multi-core processors make it now possible to improve application throughput by providing multiple processing and network resources to a single data transfer. Based on the existing PLUT method, we proposed a new dynamic buffer management scheme and an automatic parallelism tuning mechanism to achieve the maximal bottleneck rate. The performance superiority of PLUT is justified by the experimental results collected over a local 10Gbps dedicated connection.

Rao, Nageswara↗

Big PanDa Workflow Management on Titan for High Energy and Nuclear Physics and for Future Extreme Scale Scientific Application

Over a three year period, from 2016-2019, this project demonstrated the scientific benefits of integrating the Titan supercomputer at Oak Ridge Leadership Computing Facility into traditional high throughput grid based distributed computing systems managed by PanDA, the workflow management system used for the execution of all distributed computing applications by the ATLAS experiment at the Large Hadron Collider. PanDA manages millions of batch jobs daily at hundreds of clusters worldwide on request by thousands of physicist users, and processes more than an exabyte of data annually using grid middleware. High levels of operational use of Titan was sustained by PanDA in order to meet the physics goals of ATLAS. The success of this project led to the use of other supercomputers worldwide by ATLAS, and to the adoption of PanDA by other experiments and other scientists. Multiple innovative operational and computer science research goals were achieved supporting the use of supercomputers for scientific domains with large scale distributed data and distributed processing needs.

97 MATHEMATICS AND COMPUTING↗

A Framework for Privacy-Preserving Data Publishing with Enhanced Utility for Cyber-Physical Systems

Cyber-physical systems have enabled the collection of massive amounts of data in an unprecedented level of spatial and temporal granularity. Publishing these data can prosper big data research, which, in turn, helps improve overall system efficiency and resiliency. The main challenge in data publishing is to ensure the usefulness of published data while providing necessary privacy protection. In our previous work (Jia et al. 2017a), we presented a privacy-preserving data publishing framework (referred to as PAD hereinafter), which can guarantee k-anonymity while achieving better data utility than traditional anonymization techniques. PAD learns the information of interest to data users or features from their interactions with the data publishing system and then customizes data publishing processes to the intended use of data. However, our previous work is only applicable to the case where the desired features are linear in the original data record. In this article, we extend PAD to nonlinear features. Our experiments demonstrate that for various data-driven applications, PAD can achieve enhanced utility while remaining highly resilient to privacy threats.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Diagnostic Models for Wind Turbine Gearbox Components Using SCADA Time Series Data: Preprint

This paper presents a scalable, autonomous framework for diagnostics of wind turbine gearbox failures using a multi-feature supervisory control and data acquisition data set spanning multiple years. Because of the size of the data set studied, all algorithms were constructed to be scalable using a Spark-Hadoop data framework. An unsupervised approach was used to detect significant failures based on predetermined criteria. The initial criteria selected were an abnormal spike in turbine component temperature followed by a turbine power off, which helps reduce the number of potential false alarms. To detect abnormal spikes in component temperature, a model was introduced to adjust the temperature data for effects caused by ambient temperature and normal temperature increases when loaded. This study evaluates methods for normalizing temperature sensor data to identify anomalies. The models that performed the best were a linear regression and a multivariate polynomial regression. The proposed process for finding failures has tunable parameters that can be adjusted to be more or less sensitive. The combination of sensor data normalization and application of these criteria is successful in finding turbine failures resulting in downtime. The proposed methods can operate without failure or maintenance logs and can be utilized for offline analysis of large high-resolution data sets.

17 WIND ENERGY↗

Rescuing Legacy Seismic Data FAIR’ly

The Earth’s interconnected and dynamical systems operate on a spectrum of time scales from millions of years to fractions of a second. While the evolution of the Earth and its deep interior are beyond the time span of human observations, understanding of many natural phenomena operating on human times scales have benefited from direct scientific observation. Continuous processes and those that are repeated over time shape the environment we live in. Furthermore, as we are faced with unprecedented changes to climate, understanding the deeper patterns and trends in natural systems through time have taken on new importance (Research Data Alliance, 2019). The call to reuse data is driven not only by economics but also by the recognition of their complete uniqueness (observations of natural systems are not repeatable) and scientific value in enhancing current understandings as well as potential new discoveries especially in the era of big data. These data are part of the historical record and our scientific heritage (American Geophysical Union, 2019) not only in explicitly recording earth observations but implicitly recording, and thus providing the evidence that addresses the manner in which science was conducted.

58 GEOSCIENCES↗

LandScan Mosaic

The LandScan program at Oak Ridge National Laboratory (ORNL), in collaboration with the National Geospatial-Intelligence Agency (NGA), continues to deliver the most accurate and up to date global, high resolution gridded population data. Additionally, the latest advancements in the LandScan HD methodology led to reduced latency in development of rapid updates for geopolitical events. With momentum towards reporting more up to date population estimates, feedback from the user community expressed interest in reporting population estimates in ranges - whether to express a level of uncertainty or confirm to leadership and stakeholders the modeled data are estimates. Building upon the need to understand uncertainty or confidence in the modeled data and report ranges at the global scale, LandScan Mosaic was developed. LandScan Mosaic represents the next generation of high-resolution population modeling, building upon the established success of previous LandScan HD iterations. While LandScan HD employed a deterministic big data fusion approach, LandScan Mosaic enhances this methodology by integrating advanced machine learning techniques to impute missing, yet crucial, population model parameters. This advancement allows for probabilistic modeling of building occupancy and population distribution, incorporating uncertainty quantification through Monte Carlo sampling methods. By combining big data fusion with machine learning-driven imputation and stochastic modeling, LandScan Mosaic provides a more comprehensive and robust representation of population dynamics. LandScan Mosaic will be following the in the footsteps of its longstanding counterpart LandScan Global and releasing a global gridded population raster, at the 3-arcsecond resolution. This technical report documents the current stage of development of LandScan Mosaic, detailing the methodologies and data sources behind the modeling. Stakeholders are encouraged to use this document as an authoritative reference for insight into Mosaic’s data development processes. However, readers should note that LandScan Mosaic remains in a late-stage research and development phase, and methodologies and data presented here are subject to refinements ahead of the anticipated global release in Summer 2025. Feedback and inquiries from users and stakeholders are welcomed as we continue to refine and enhance this important population resource.

97 MATHEMATICS AND COMPUTING↗

Big Data Synchrophasor Monitoring and Analytics for Resiliency Tracking (BDSMART)

This report contains key findings from a project titled Big Data Synchrophasor Monitoring and Analytics for Resiliency Tracking (BDSMART), which was carried out through a collaborative effort of a team of researchers from Texas A&M Engineering Experiment Station, Temple University, and Quanta Technology, LLC. The in-kind support came from OSIsoft (acquired by AVEVA), which provided their PI Historian software to demonstrate the use case of streaming PMU data. The first section of the report describes the project goals and objectives related to the development of Machine Learning (ML) models capable of detecting and classifying events by processing phasor measurements captured in the field by Phasor Measurement Units (PMUs). The data for this study was contributed by the utilities/ISOs from the Western and Eastern interconnects and ERCOT, further referred to as Interconnect B (IC B), Interconnect A (IC A), and Interconnect C (IC C), respectively. The approach that the BDSMART Research Team proposed and the key research tasks defined by the team are outlined in this section. The next section describes the technical approach. We first discuss the data constraints related to the PMU measurements and data interpretation constraints imposed by the data contributors. They provided neither the topological information of the grid nor PMU placement locations and captured recorded data at very few locations in the system with the reporting rate of either 30 or 60 fps. The recordings are mostly positive sequence voltage, frequency, and ROCOF, and in some limited cases, three-phase voltages and currents. We then reflect on the bad data issues that stem from poor recording practices and vague definitions of the PMU status bits to supposedly be used for bad data identification. Finally, the data discovery points to imprecise time stamps with incomplete event start/end time, as well as inconsistent and incomplete event labeling, which combined make the implementation of the data models using supervising learning quite challenging. Following the data discovery study, we hypothesize that because the IC B data has the most complete labels, we should focus our model development on that data and then test it on data from other interconnects. We also define the common metrics used to evaluate the results from the ML algorithm tests. We concluded this section by summarizing the common ML models we used and explaining how we implemented and tested them. The issues from this section are expanded in the Training Dataset Report from this project. The final section of this report deals with the accomplishments and conclusions. As the accomplishments, we formulate the problem we are solving and what is achieved by solving the problem. We then reflect on each of the analytics tools we developed and point out the performance of each tool when applied to solving the mentioned problems. We reference this work for further details to the papers we published on each tool. In the conclusions, we give recommendations on how to improve future PMU recording practices to facilitate the ML algorithm implementation and guidance for the future standardization work aimed at clarifying the ambiguities associated with the PMU status bits. We finally list future tasks that can bring about further improvements in the proposed algorithms. The issues from this section are expanded in the Training, and Test Dataset Report filed at the project completion date.

97 MATHEMATICS AND COMPUTING↗

Combinatorial Evaluation of Physical Feature Engineering, Classical Machine Learning, and Deep Learning Models for Synchrophasor Data at Scale

A major objective of the project was to train and evaluate the effectiveness of multiple event and anomaly detection, identification and classification deep temporal learning models for processing of real-time phasor measurement unit (PMU) data streams. A vast dataset, consisting of two years of phasor measurements from all three U.S. Interconnections, was curated and released by the Department of Energy (DOE) through Pacific Northwest National Laboratory (PNNL). The dataset also included an event log that provided event times and types (e.g. generator trips, line trips, planned service events, transformer operations, etc.). Our analysis of this dataset addressed six (6) of the eleven (11) research priorities identified in Funding Opportunity Announcement (FOA) DE-FOA-0001861 “Big Data Analysis of Synchrophasor Data” (FOA 1861). Rather than being limited to pre-determined specific algorithms, this project relied on the uniquely structured, highly performant underlying time series database capabilities of the PredictiveGrid platform to assess the vast dataset utilizing a wide variety of algorithms.

24 POWER TRANSMISSION AND DISTRIBUTION↗

FY2018 Discovery Through Situational Awareness: Anomalies, Oscillations, and Classification

This technical report is a summary of work performed under the DOE GMLC program under the task titled “Discovery through Situational Awareness”. The focus of this work was to apply big data, statistical techniques to PMU data to do the following: 1) baseline PMU data and find anomalies with a focus on phase angle pairs, 2) identify the frequencies of dominant modal oscillations between different parts of a power system, and 3) identify and classify frequency events in PMU data. This work was performed on PMU data from the Western Interconnect. Many of these algorithms will be applied to wide area phase angle pair data on the Eastern Interconnect in a tool called ESAMS (Eastern Interconnect Situational Awareness Monitoring System). ESAMS was built by EPG (Electric Power Group) and PNNL and is currently being installed on the Eastern Interconnect. The results discussed in this report were made from 14 PMUs from data ranging from Oct 2016 to May 2018. The PMU data were measured 60 times each second. Fourteen phase angle pairs were included, with reactive and active power being calculated at 14 sites. All results have been de-identified for this report. The methodologies applied in the ESAMS tool are described in Section 2. A baseline of PMU data is created using the last 120 days of data. This baseline describes typical behavior as understood from the data. The baseline is then applied to the next day’s data and anomalies from that baseline are identified. Plots are created to help describe what is anomalous during that specific moment in time. These algorithms are currently being installed on the Eastern Interconnect. FY19 work will include discussing the results and findings from the ESAMS tool. A new method of identifying the frequencies of dominant modal oscillations between different parts of a power system is described in Section 3. A list of 199 frequency events provided by Bonneville Power Administration were used to create algorithms to detect frequency events and to create classification rules that can be used to identify future frequency events. Section 4 discusses the results the performance of 7 different event detection, clustering-based methods. Accuracy percentages ranged from 93.59% to 99.16%, with most methods being very fast. GBM (Gradient Boosting Machine) performed well and quickly. These 7 different methods were also tested to determine how well each built classification rules on training data and then applied those rules to identify future frequency events. Accuracy percentages ranged from 89.09% to 99.9%, with all methods performing quickly. GLM (General Linear Model) was viewed as the top performer when considering accuracy and processing time. Because the list of events consisted of 80% of them as active power events and only 20% as faults, all methods struggled to identify events as faults. Small faults were especially difficult to identify. A separate algorithm was created to help with this. Additional work will be done in FY19 on event detection using more data and more events and refinements to the methods.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Monoenergetic photon-induced fission cross-section ratio measurements for U 235 , U 238 , and Pu 239 from 9.0 to 17.0 MeV

Background: High-accuracy data are needed to advance microscopic descriptions of the nuclear fission process, to improve the predictive precision of phenomenological models, and for applications in nuclear energy and homeland security. Purpose: In this work, the main goal is to provide high-accuracy cross-section data for photofission of 235 U, 238 U, and 239 Pu in the energy range from the fission threshold to the high-energy tail of the giant dipole resonance. These new data should contribute significantly to the reduction of the systematic uncertainty in evaluated photofission cross-section databases. Method: Cross-section ratios for photofission of the “big three” actinide nuclei were measured using a quasimonoenergetic photon beam and dual-fission chambers. The measurements were performed at the HIγS facility using a photon beam produced from Compton backscattering of free-electron laser light. The dual-fission chamber enabled simultaneous counting of fission events from two targets. This method allows for cross-section ratio measurements with very small systematic errors. The largest source of systematic error in the determination of the cross-section ratios is the uncertainty in the ratio of the target thicknesses. Results: We report photon-induced fission cross-section ratios for σ[ 235 U(γ,f) / 238 U(γ,f)] , σ[235U(γ,f) / 239 Pu(γ,f)] , and σ[ 238 U(γ,f) / 239 Pu(γ,f)] at photon energies from 9.0–17.0 MeV. More than 20 data points were measured for each ratio, and the systematic uncertainties are less than 2%. Conclusion: The present photofission cross-section ratio data sets are compared to ratios computed from previous measurements, to the corresponding neutron-induced fission cross-section ratios, and to ratios computed from evaluated databases. Finally, the data obtained in this work for σ[ 235 U(γ,f) / 238 U(γ,f)] are consistent with the existing data, while for σ[ 235 U(γ,f) / 239 Pu(γ,f)] and σ[ 238 U(γ,f) / 239 Pu(γ,f)] the present data are systematically lower.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

The Geothermal Data Repository: Five Years of Open Geothermal Data, Benefits to the Community: Preprint

In the five years since its inception, the Department of Energy's (DOE) Geothermal Data Repository (GDR) has grown from the simple idea of storing public data in a centralized location to a valuable tool at the center of the DOE open data movement where it is providing a tangible benefit to the geothermal scientific community. Throughout this time, the GDR project team has been working closely with the community to refine the data submission process, improve the quality of submitted data, and embrace modern proper data management strategies to maximize the value and utility of submitted data. This paper explores some of the motivations behind various improvements to the GDR over the last 5 years, changes in data submission trends, and the ways in which these improvements have helped to drive research, fuel innovation, and accelerate the adoption of geothermal technologies.

15 GEOTHERMAL ENERGY↗

A Data Science and Machine Learning Platform Supporting Large Particle Accelerator Control and Diagnostics Applications Final Report: SBIR Initial Phase II DE-SC0022583

The Machine Learning Data Platform (MLDP) is a product providing full-stack support for data science, Machine Learning, and Artificial Intelligence (ML/AI) applications at particle accelerator and large experimental physics facilities. It supports ML/AI applications from front-end, high-speed acquisition of heterogeneous, time-series data, through data archiving and management, to back-end analysis. The MLDP embodies a “data-science ready” platform for data analysis and ML/AI applications in diagnosis, modelling, control, and optimization of these facilities. It provides data scientists and applications a consistent, datacentric interface to archive data standardizing implementation and deployment of ML/AI algorithms to different operations configurations within the same facility, or between facilities. Being an open-source, public-domain project, the MLDP is intended for broadest possible impact by increasing accessibility and minimizing the required expertise for installation and operation. The MLDP can also be deployed at user facilities for experimental data collection, archiving, and analysis. It is capable of acquisition and archiving of heterogeneous data from experimental equipment (e.g., images, arrays, structures, etc.) along with system hardware configurations (e.g., scalars, tables), control system process variables, and any metadata required for provenance. Thus, the MLDP can manage experimental data through its entire lifecycle, from acquisition and archiving, through analysis and investigation, to release and final publication.

43 PARTICLE ACCELERATORS↗

Machine Learning-Enabled Image Classification for Automated Electron Microscopy

Abstract Traditionally, materials discovery has been driven more by evidence and intuition than by systematic design. However, the advent of “big data” and an exponential increase in computational power have reshaped the landscape. Today, we use simulations, artificial intelligence (AI), and machine learning (ML) to predict materials characteristics, which dramatically accelerates the discovery of novel materials. For instance, combinatorial megalibraries, where millions of distinct nanoparticles are created on a single chip, have spurred the need for automated characterization tools. This paper presents an ML model specifically developed to perform real-time binary classification of grayscale high-angle annular dark-field images of nanoparticles sourced from these megalibraries. Given the high costs associated with downstream processing errors, a primary requirement for our model was to minimize false positives while maintaining efficacy on unseen images. We elaborate on the computational challenges and our solutions, including managing memory constraints, optimizing training time, and utilizing Neural Architecture Search tools. The final model outperformed our expectations, achieving over 95% precision and a weighted F-score of more than 90% on our test data set. This paper discusses the development, challenges, and successful outcomes of this significant advancement in the application of AI and ML to materials discovery.

Materials Science↗

Smart Mobility in the Cloud: Enabling Real-Time Situational Awareness and Cyber-Physical Control Through a Digital Twin for Traffic

This article presents the design, implementation, and use cases of the Chattanooga Digital Twin (CTwin) towards the vision for next-generation smart city applications for urban mobility management. CTwin is an end-to-end web-based platform that incorporates various aspects of the decision-making process for optimizing urban transportation systems in Chattanooga, Tennessee, to reduce traffic congestion, incidents, and vehicle fuel consumption. The platform serves as a cyberinfrastructure to collect and integrate multi-domain urban mobility data from various online repositories and Internet of Things (IoT) sensors, covering multiple urban aspects (e.g., traffic, natural hazards, weather, and safety) that are relevant to urban mobility management. The platform enables advanced capabilities for: (a) real-time situational awareness on traffic and infrastructure conditions on highways and urban roads, (b) cyber-physical control for optimizing traffic signal timing, and (c) interactive visual analytics on big urban mobility data and various metrics for traffic prediction and transportation performance evaluation. The platform is designed using a multi-level componentization paradigm and is implemented using modular and adaptive architecture, rendering it as a generalizable and extendable prototype for other urban management applications. We present several use cases to demonstrate CTwin's core capabilities for supporting decision-making in smart urban mobility management.

33 ADVANCED PROPULSION SYSTEMS↗