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At least 199 records · Page 11

A Landsat Digital Image Rectification System

DIRS is a Digital Image Rectification System for the geometric correction of Landsat Multispectral Scanner digital image data. DIRS removes spatial distortions from the data and brings it into conformance with the Universal Transverse Mercator (UTM) map projection. Scene data in the form of landmarks or Ground Control Points (GCPs) are used to drive the geometric correction algorithms. The system offers extensive capabilities for 'shade printing' to aid in the determination of GCPs. Affine, two dimensional least squares polynominal and spacecraft attitude modeling techniques for geometric mapping are provided. Entire scenes or selected quadralaterals may be rectified. Resampling through nearest neighbor or cubic convolution at user designated intervals is available. The output products are in the form of digital tape in band interleaved, single band or CCT format in a rotated UTM projection. The system was designed and implemented on large scale IBM 360 computers with at least 300-500K bytes of memory for user application programs and five nine track tapes plus direct access storage.

Van Wie, P.↗

Ising on $\mathbb{S}^2$-- The Affine Conjecture

We review the recent construction \cite{brower2024isingmodelmathbbs2} of the 2d Ising model on a triangulated sphere $\mathbb{S}^2$. Surprisingly, this led to a precise map of the lattice couplings to the target geometry in order to reach the conform field theory (CFT) in the continuum limit. For the integrable 2d Ising CFT, the map was found analytically \cite{Brower_2023}. Here we conjecture how this might be generalized. The discrete geometry is implemented by the piecewise flat triangulation introduced by Regge in 1960 for the Einstein Hilbert action \cite{Regge1961GeneralRW}. Then following our Ising example, we posit the existence of a smooth map of lattice couplings in affine parameters consistent with quantum correlators. A sequence of theoretical investigations and numerical simulations are recommended to test this conjecture. They begin with non-integrable CFT's -- the 2d $\phi^4$ theory on $\mathbb{S}^2$; the 3d Ising model on $\mathbb{S}^3$ and $\mathbb{R} \times \mathbb{S}^2$; QED3 on $\mathbb{R} \times \mathbb{S}^{2} $ as an intermediate step to 4d non-Abelian lattice gauge theory on $\mathbb{R} \times \mathbb{S}^3$.

Brower, Richard C. [Boston U.] (ORCID:000000028185↗

Q -score as a reliability measure for protein, nucleic acid and small-molecule atomic coordinate models derived from 3DEM maps

Atomic coordinate models are important for the interpretation of 3D maps produced with cryoEM and cryoET (3D electron microscopy; 3DEM). In addition to visual inspection of such maps and models, quantitative metrics can inform about the reliability of the atomic coordinates, in particular how well the model is supported by the experimentally determined 3DEM map. A recently introduced metric, Q-score, was shown to correlate well with the reported resolution of the map for well fitted models. Here, we present new statistical analyses of Q-score based on its application to ∼10 000 maps and models archived in the EMDB (Electron Microscopy Data Bank) and PDB (Protein Data Bank). Further, we introduce two new metrics based on Q-score to represent each map and model relative to all entries in the EMDB and those with similar resolution. We explore through illustrative examples of proteins, nucleic acids and small molecules how Q-scores can indicate whether the atomic coordinates are well fitted to 3DEM maps and also whether some parts of a map may be poorly resolved due to factors such as molecular flexibility, radiation damage and/or conformational heterogeneity. These examples and statistical analyses provide a basis for how Q-scores can be interpreted effectively in order to evaluate 3DEM maps and atomic coordinate models prior to publication and archiving.

B factors↗

A Solution of the Direct and Inverse Potential Problems for Arbitrary Cascades of Airfoils

Methods are given of determining the potential flow plast an arbitrary cascade of airfoils and the inverse problem of determining an airfoil having a prescribed velocity distribution in cascade. Results indicated that Cartesian mapping function method may be satisfactorily extended to include cascades. Numerical calculation for computing cascades by Cartesian mapping function method is considerably greater than for single airfoils but much less than hitherto required for cascades. Detailed results are presented graphically.

PRESSURE DISTRIBUTION - AIRFOILS↗

Map projections for larger-scale mapping

For the U.S. Geological Survey maps at 1:1,000,000-scale and larger, the most common projections are conformal, such as the Transverse Mercator and Lambert Conformal Conic. Projections for these scales should treat the Earth as an ellipsoid. In addition, the USGS has conceived and designed some new projections, including the Space Oblique Mercator, the first map projection designed to permit low-distortion mapping of the Earth from satellite imagery, continuously following the groundtrack. The USGS has programmed nearly all pertinent projection equations for inverse and forward calculations. These are used to plot maps or to transform coordinates from one projection to another. The projections in current use are described.

Snyder, J. P.↗

Finite difference grid generation by multivariate blending function interpolation

The General Interpolants Method (GIM) code which solves the multidimensional Navier-Stokes equations for arbitrary geometric domains is described. The geometry module in the GIM code generates two and three dimensional grids over specified flow regimes, establishes boundary condition information and computes finite difference analogs for use in the GIM code numerical solution module. The technique can be classified as an algebraic equation approach. The geometry package uses multivariate blending function interpolation of vector-values functions which define the shapes of the edges and surfaces bounding the flow domain. By employing blending functions which conform to the cardinality conditions the flow domain may be mapped onto a unit square (2-D) or unit cube (3-D), thus producing an intrinsic coordinate system for the region of interest. The intrinsic coordinate system facilitates grid spacing control to allow for optimum distribution of nodes in the flow domain.

Anderson, P. G.↗

Procedures for analysis of spatial relationships among ship survey data and sea surface temperature

The establishment of a limited spatial data base for the U.S. eastern seaboard vicinity is discussed along with the demonstration of computer assisted analysis techniques for investigating spatial patterns and relationships among ship survey data and remotely sensed sea surface temperature. Ship survey variables included concentrations of two zooplankton, two icthyoplankton, and two fish species, in addition to physical data of depth to bottom and surface and bottom water temperatures. Continuous spatial distributions of these data were created by both weighted nearest neighbor and iterative smoothing interpolation techniques. Maps of surface water temperature were created by digitizing GOES satellite images. All mapped data were spatially registered by conversion of latitude and longitude coordinates to rotated Lambert conic conformal rectilinear coordinates and stored in grid format of approximately one hundred square kilometers per cell. The analysis of these data include the generation of statistical summaries and maps describing the joint occurrence among variables.

Berry, J. K.↗

Secondary electron emission from a dielectric film subjected to an electric field

An electric field in the range of 0.3,3.3 kV/mm is created normal to a thin film FEP teflon sample which accumulates potential of up to 8.8, 13.7 or 18.3 kV when exposed to an electron beam having energy of 10.0, 15.0 or 20.0 kV, respectively. It is found that the secondary electron emission from the charged sample varies with field. The threshold voltage, at which the secondary electron emission coefficient sigma is unity, drops down from a low field value of 13.73 kV to a high field value of 13.11 kV for a 15.0 kV beam. A computational technique was developed that generates equipotential lines or contours and field vectors above a plane where potential is known. The utilization of conformal transformations allows the extension of the technique to configurations which map into a plane.

Quoc-Nguyen, N.↗

Three dimensional unstructured grids for the solution of the Euler equations

The advancing front technique is being used to develop a code to generate grids around complex 3-D configurations for use in computing the invisid flow solutions by the Euler equations. By the advancing front technique points are introduced concurrently with the connectivity information so that a separate library is not required. The generation of a 3-D grid is accomplished in several steps. First the boundaries of the domain to be gridded must be described by two-, three- or four-sided surface patches. Next, a background mesh is required to control the grid spacing and stretching throughout the domain. This coarse tetrahedral grid is not required to conform to any of the boundaries. Next, each of the patches is mapped to 2-D, triangulated by the advancing front technique and mapped back to 3-D. These triangles form the initial front for the generation of the final tetrahedral mesh.

Gumbert, Clyde↗

Influence of Fault-Controlled Topography on Fluvio-Deltaic Sedimentary Systems in Eberswalde Crater, Mars

Eberswalde crater was selected as a candidate landing site for the Mars Science Laboratory (MSL) mission based on the presence of a fan-shaped sedimentary deposit interpreted as a delta. We have identified and mapped five other candidate fluvio -deltaic systems in the crater, using images and digital terrain models (DTMs) derived from the Mars Reconnaissance Orbiter (MRO) High Resolution Imaging Science Experiment (HiRISE) and Context Camera (CTX). All of these systems consist of the same three stratigraphic units: (1) an upper layered unit, conformable with (2) a subpolygonally fractured unit, unconformably overlying (3) a pitted unit. We have also mapped a system of NNE-trending scarps interpreted as dip-slip faults that pre-date the fluvial -lacustrine deposits. The post-impact regional faulting may have generated the large-scale topography within the crater, which consists of a Western Basin, an Eastern Basin, and a central high. This topography subsequently provided depositional sinks for sediment entering the crater and controlled the geomorphic pattern of delta development.

Rice, Melissa S.↗

Preliminary albedo map of the south polar region

A preliminary albedo map of the Martian south polar region in stereographic projection was prepared mainly from mission test video system (MTVS) prints before rectified and gridded prints were received, but some adjustments were made to conform with a semi-controlled photomosaic. Wherever possible, use also was made of crater coordinates. Two versions of the map are presented: one with a coordinate grid overlay and one without it. The precision of the coordinates is generally within 1 deg in latitude and the corresponding are in longitude. The maps show both the albedo markings and, with subdued contrast, the craters and topographic features that are necessary to locate the former. The map covers the range of latitudes from - 65 deg to the south pole.

Devaucouleurs, G.↗

Learning Latent Representations to Bridge Coarse-Grained and Atomistic Resolutions in Polymer Simulations

We present a machine-learning-based framework for learning reduced-order representations of polymer chain conformations across coarse-grained (CG) and united-atom (UA) fidelities. By employing linear singular value decomposition and nonlinear autoencoders, we compress high-dimensional polymer configurations into latent spaces with minimal loss of structural accuracy. Crucially, we demonstrate a near-perfect linear mapping between CG and UA latent spaces, enabling an efficient super-resolution back-mapping procedure that reconstructs high-fidelity UA configurations from CG simulations. While minor structural inaccuracies occur, they are effectively corrected through a brief molecular dynamics relaxation, forming a practical hybrid machine learning−physics scheme. This approach establishes the key structural prerequisites for accelerated polymer dynamics simulations: a compact and accurate latent encoding of polymer chain conformations and a validated multi-fidelity mapping that permits reconstruction of UA structures from CG configurations. The extension of this framework to explicit time evolution within the latent space, enabling dynamics to be propagated at CG fidelity and decoded to UA resolution only when required, represents a natural and well-motivated direction for future work.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Pilot Non-Conformance to Alerting System Commands

This research project examined the effects of consonance between cockpit displays and alerting system as a technique to encourage pilots to conform to alerting system commands. An experiment used the task of collision avoidance during closely spaced parallel approaches as a case study, building upon previous experiments which identified instances of non-conformance and conflicts between the alerting criteria preferred by pilots, compared to that used by alerting systems. Using a workstation based, part-task simulator, each of 45 subjects completed 45 experiment runs. In each run, the subjects were told they were flying an approach. Their primary task was to keep their wings level despite turbulence through the use of a sidestick. The sidestick commands did not affect the path of the aircraft, however, so that consistent approach paths were be followed. Their secondary task was to indicate when an aircraft on a parallel approach is blundering towards them, as evidenced by the traffic display. Subjects were asked to press different buttons indicating whether they feel an avoidance maneuver is required by the traffic situation or not. At the completion of each run, subjects were asked to rate their confidence in their decision and, if appropriate, to rate the timeliness of automatic alerts when had been given. Three different automatic alert conditions were tested. The "No Automatic Alerts Given" condition is self-explanatory. In the "Automatic Alerts Based on NTZ Criteria" condition, an automatic alert was given when the NTZ criteria was triggered; this criteria is consistent with subject reactions in other studies, in which subjects were found to react, on average, when the other aircraft was 1350 min to the side of the own aircraft. In the "Automatic Alerts Based on MIT Criteria" condition, an automatic alert was given when the MIT criteria was triggered; this criteria was developed by Carpenter and Kuchar for parallel approaches to have better performance, at the cost of increased complexity and higher sensitivity to pilot non-conformance. Three displays were tested. The "Baseline Display" is based on a moving map display, with a top-down view, track-up orientation, iconic presentation of the other aircraft's positions and a text presentation of the other aircraft's altitude. The "NTZ Alert Criteria Shown" display added to the Baseline Display an explicit presentation on the display of the boundary delineating the NTZ criteria, allowing for quick comparison of the other aircraft's position relative to this alert criteria. Likewise, the "MIT Alert Criteria Shown" display added to the Baseline Display an explicit presentation on the display of the boundary delineating the MIT criteria, allowing for quick comparison of the other aircraft's position relative to this alert criteria The test matrix for this experiment was three dimensional, varying displays, alerts and traffic conflict scenarios.

Pritchett, Amy↗

Integrated Neutronics Modeling for Inertial Fusion Energy Systems: Development and Application to LD-FIRST

Lawrence Livermore National Laboratory (LLNL) is proposing a new Laser Driven Fusion Integration Research and Science Test Facility (LD-FIRST) with the goal of providing an experimental testbed for future Inertial Fusion Energy (IFE) systems. However, IFE systems require detailed and accurate multiphysics modeling to quantify material damage, thermal loading, and tritium breeding within complex chamber environments. This article presents the first step in an integrated multiphysics framework that couples meshed CAD-based geometry within Monte Carlo neutronic simulations to enable high-fidelity analysis of IFE chamber concepts, with future coupling to external codes. The neutronics workflow utilizes OpenMC and its third-party capability to use CAD-based geometries through DAGMC and tally on unstructured meshes with Libmesh to evaluate neutron transport behavior, geometric fidelity, and material performance under reactor-relevant conditions. The use of tailored tallies on unstructured meshes in this framework allows direct transfer without interpolating to CFD simulation tools. Two IFE chambers were evaluated, both conceived by LLNL: HYLIFE-II and Laser IFE (LIFE). This work produced high-fidelity conformal surface and volumetric meshes of the HYLIFE-II and LIFE chambers with mapped spatial insight into material damage, thermal loading, and tritium breeding. The HYLIFE-II model was built utilizing available resources and used as a test case to verify that the neutronics framework can handle complex geometries. The LIFE chamber CAD was provided by LLNL and was the main focus of this work. This work analyzes multiple ternary alloy breeding materials for the LIFE chamber, across different 6 Li enrichments to produce data relevant to the LD-FIRST project. This work also investigates the level of model fidelity for the LIFE chamber, and results show that inclusion of detailed first wall and coolant structures increased the predicted tritium breeding ratio (TBR) by ~30%, highlighting the sensitivity of tritium breeding and the need for a high-fidelity simulation framework for IFE chambers. These developments provide a scalable toolset for the design and optimization of next-generation IFE chambers, forming a solid foundation for future coupled multiphysics analysis.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Computation of three-dimensional flow about aerobrake configurations

Ellipsoid, cone and cylinder aerobrake configurations are analyzed to provide comparison data between experimental and model predictions. An analytical model was devised to account for the shock layer ahead of the body and in the near-wake region in terms of the Navier-Stokes equations expressed in conformal polar and azimuthal-angle coordinates. Using polar coordinates simplified the equations by mapping the body onto a sphere, a procedure which also reduced the magnitude of the discretization errors. The equations are then solved using an alternating direction implicit (ADI) factorization technique. Computations were carried out for Mach 3-10 at various grid resolutions and compared with available wind tunnel data. The model generated pressure distributions, heat transfer coefficients and velocity profile data that agreed relatively well with experimental data at a reduced computational cost. Further work is necessary to identify the location of shocks and to model flows about asymmetric configurations.

Li, C. P.↗

Mapping Hsp104 interactions using cross‐linking mass spectrometry

Molecular machines from the AAA+ (ATPases Associated with diverse cellular Activity) superfamily of protein disaggregases play important roles in protein folding, disaggregation and DNA processing. Recent cryo-EM structures of AAA+ molecular machines have uncovered nuanced changes in their conformation that underlie their specialized functions. Structural knowledge of these molecular machines in complex with substrates begins to explain their mechanism of activity. Here, we explore how cross-linking mass spectrometry (XL-MS) can be used to interpret changes in conformation induced by ATP in Hsp104 and how a substrate may interact with Hsp104. We applied a panel of cross-linking reagents to produce cross-linking maps of Hsp104 and interpret our data on previously determined X-ray and cryo-EM structures of Hsp104 from a thermophilic yeast, Calcarisporiella thermophila. We developed an analysis pipeline to differentiate between intra-subunit and inter-subunit contacts within the hexameric homo-oligomer. We identify cross-links that break the asymmetry that is present in Hsp104 in an ATP-hydrolysis competent conformation but is absent in an ATP-hydrolysis-defective mutant. Finally, we identify contacts between Hsp104 and a selected protein (proprotein convertase subtilisin/kexin type 9 PCSK9) to reveal contacts on the central channel of Hsp104 across the length of this protein indicating that we might have trapped interactions consistent with its translocation. Our simple and robust XL-MS-based experiments and methods help interpret how these molecular machines change conformation and bind to other proteins even in the context of homo-oligomeric assemblies enabling coupling state-of-the-art modeling approaches with XL-MS.

60 APPLIED LIFE SCIENCES↗

Constructing nested coordinates inside strongly shaped toroids using an action principle

A new approach for constructing polar-like boundary-conforming coordinates inside a toroid with strongly shaped cross-sections is presented. A coordinate mapping is obtained through a variational approach, which involves identifying extremal points of a proposed action in the mapping space from [0,2π] 2 ×[0,1] to a toroidal domain in $\mathbb{R}$ 3 . This approach employs an action built on the squared Jacobian and radial length. Extensive testing is conducted on general toroidal boundaries using a global Fourier–Zernike basis via action minimisation. The results demonstrate successful coordinate construction capable of accurately describing strongly shaped toroidal domains. The coordinate construction is successfully applied to the computation of three-dimensional magnetohydrodynamic equilibria in the GVEC code where the use of traditional coordinate construction by interpolation from the boundary failed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Improved Depiction Of Computed Unsteady Flows

PLOT4D and STREAKER programs increase ease of production and utility of animated depictions of unsteady flows simulated numerically by advanced computational fluid dynamics. Programs developed to maximize information displayed while minimizing amount stored. PLOT4D, an extended version of PLOT3D, used to depict steady three-dimensional flows, incorporates features making it more computationally efficient than to visualize unsteady flow as succession of steady flows, animating frame by frame. PLOT4D postprocesses numerical output of fluid-dynamical computation into maps of flow quantities on two-coordinate surfaces depicting cut through flow field or conform to body surface. STREAKER generates streaklines, close approximations of patterns traced by streams of dye or smoke released into simulated flows. Streaklines defined via spatial succession of endpoints of pathlines of massless particles released into flow. STREAKER computes endpoints by fourth-order Runge-Kutta integration of velocity vectors.

Smith, Merritt H.↗