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At least 199 records · Page 11

Integrative analysis of CAM photosynthesis reveals its impact on primary metabolism in Yucca

Crassulacean Acid Metabolism (CAM) is an adaptation that temporally separates carbon uptake at night from photosynthesis during the day. CAM has evolved repeatedly across vascular plants, as its emergence may depend on simple regulatory changes to deeply conserved metabolic pathways. Modern CAM research relies heavily on interpretation of transcriptomic data, though regulation occurs at multiple levels following transcription. Additionally, while most research to date has focused on a handful of genes and metabolites in the core CAM pathway, the co-option of conserved regulatory and functional genes is bound to have wide-ranging effects on other aspects of primary metabolism. In this study, we integrate transcriptomic, proteomic, and metabolomic data to compare primary metabolism between the CAM species Yucca aloifolia and closely related C 3 species, Y. filamentosa. We observe minimal correlation between protein abundance and mRNA expression, suggesting significant post-transcriptional regulation in CAM species. We also find evidence of shifts in gene expression and metabolite accumulation outside of the central CAM pathway, suggesting that the shift to CAM has cascading effects across primary metabolism, especially nitrogen metabolism. Our findings provide insights into the metabolic shifts associated with CAM evolution, and highlight the complexity of its regulation at multiple biological levels.

59 BASIC BIOLOGICAL SCIENCES↗

Canopy Structure Exhibits Linear and Nonlinear Links to Biome‐Level Maximum Light Use Efficiency

Maximum light use efficiency (ε max ) represents a plant's capacity to convert light into carbon during photosynthesis. Although prior studies have explored ε max variations between sunlit and shaded leaves or its temporal ties to canopy structure, the spatial relationship between biome-level ε max (ε biome ) and biome structure remains poorly understood. We analysed data from 320 eddy covariance sites (~855 site-years) with satellite-derived near-infrared reflectance of vegetation (NIRv) and leaf area index (LAI). We introduced NIRvN (NIRv/LAI) to isolate architectural effects from leaf quantity. Site-level ε max was calculated and aggregated by biome to derive ε biome . Results show ε biome rises nonlinearly with NIRv and LAI, saturating at high LAI, with crops and tropical evergreen forests deviating from this trend. Conversely, ε biome decreases linearly with increasing NIRvN, indicating that biomes with greater NIR scattering efficiency exhibit lower ε biome . These results enhance understanding of structural influences on carbon uptake across global biomes.

54 ENVIRONMENTAL SCIENCES↗

Long-term nitrogen loading alleviates phosphorus limitation in terrestrial ecosystems

Increased human-derived nitrogen (N) deposition to terrestrial ecosystems has resulted in widespread phosphorus (P) limitation of net primary productivity. However, it remains unclear if and how N-induced P limitation varies over time. Soil extracellular phosphatases catalyze the hydrolysis of P from soil organic matter, an important adaptive mechanism for ecosystems to cope with N-induced P limitation. In this study we show, using a meta-analysis of 140 studies and 668 observations worldwide, that N stimulation of soil phosphatase activity diminishes over time. Whereas short-term N loading (≤5 years) significantly increased soil phosphatase activity by 28%, long-term N loading had no significant effect. Nitrogen loading did not affect soil available P and total P content in either short- or long-term studies. Together, these results suggest that N-induced P limitation in ecosystems is alleviated in the long-term through the initial stimulation of soil phosphatase activity, thereby securing P supply to support plant growth. Our results suggest that increases in terrestrial carbon uptake due to ongoing anthropogenic N loading may be greater than previously thought.

59 BASIC BIOLOGICAL SCIENCES↗

The effects of rising CO 2 concentrations on terrestrial systems: scaling it up

Since the Industrial Revolution, atmospheric CO 2 concentrations have increased by c. 50%, from 280 ppm to a current level of 415 ppm and rising (Ciais et al., 2013). But CO 2 concentrations would be even higher if the terrestrial biosphere was not acting as a carbon sink, absorbing c. 30% of the CO 2 we emit every year (Le Quéré et al., 2016). Understanding how increasing CO 2 concentrations will alter the ability of vegetation and soils to sequester carbon is therefore critical for predicting the trajectory of future climate change, since a reduction in this carbon sink would cause a more rapid accumulation of CO2 in the atmosphere (Dusenge et al., 2019). In this issue of New Phytologist, Walker et al. (2021; pp. 2413–2445) synthesize data from an incredibly broad range of sources, including herbaria, free air CO 2 enrichment (FACE) studies, ice cores, eddy covariance sites, and remote sensing, and examine an enormous diversity of measurements (such as soil respiration rates, glucose isotopomers from leaves, tree ring width data, stream-gauges for runoff, and direct atmospheric CO 2 measurements) to address the question of how increasing CO2 concentrations are affecting the carbon uptake capacity of our planet.

54 ENVIRONMENTAL SCIENCES↗

Rising CO 2 and warming reduce global canopy demand for nitrogen

Nitrogen (N) limitation has been considered as a constraint on terrestrial carbon uptake in response to rising CO 2 and climate change. By extension, it has been suggested that declining carboxylation capacity (V cmax ) and leaf N content in enhanced-CO 2 experiments and satellite records signify increasing N limitation of primary production. We predicted Vcmax using the coordination hypothesis and estimated changes in leaf-level photosynthetic N for 1982–2016 assuming proportionality with leaf-level V cmax at 25°C. The whole-canopy photosynthetic N was derived using satellite-based leaf area index (LAI) data and an empirical extinction coefficient for V cmax , and converted to annual N demand using estimated leaf turnover times. The predicted spatial pattern of V cmax shares key features with an independent reconstruction from remotely sensed leaf chlorophyll content. Predicted leaf photosynthetic N declined by 0.27% yr -1 , while observed leaf (total) N declined by 0.2–0.25% yr -1 . Predicted global canopy N (and N demand) declined from 1996 onwards, despite increasing LAI. Leaf-level responses to rising CO 2 , and to a lesser extent temperature, may have reduced the canopy requirement for N by more than rising LAI has increased it. This finding provides an alternative explanation for declining leaf N that does not depend on increasing N limitation.

54 ENVIRONMENTAL SCIENCES↗

The xylem of anisohydric Quercus alba L. is more vulnerable to embolism than isohydric codominants

Abstract The coordination of plant leaf water potential (Ψ L ) regulation and xylem vulnerability to embolism is fundamental for understanding the tradeoffs between carbon uptake and risk of hydraulic damage. There is a general consensus that trees with vulnerable xylem more conservatively regulate Ψ L than plants with resistant xylem. We evaluated if this paradigm applied to three important eastern US temperate tree species, Quercus alba L., Acer saccharum Marsh. and Liriodendron tulipifera L., by synthesizing 1600 Ψ L observations, 122 xylem embolism curves and xylem anatomical measurements across 10 forests spanning pronounced hydroclimatological gradients and ages. We found that, unexpectedly, the species with the most vulnerable xylem ( Q. alba ) regulated Ψ L less strictly than the other species. This relationship was found across all sites, such that coordination among traits was largely unaffected by climate and stand age. Quercus species are perceived to be among the most drought tolerant temperate US forest species; however, our results suggest their relatively loose Ψ L regulation in response to hydrologic stress occurs with a substantial hydraulic cost that may expose them to novel risks in a more drought‐prone future.

Benson, Michael C.↗

Using leaf and stomatal traits to predict biomass production and water use efficiency in Populus

Climate change is reshaping ecosystems, driving plants to adapt through leaf-trait plasticity that reflects strategies for growth and water use. Predicting biomass production and intrinsic water use efficiency (iWUE) remains challenging because of genetic, taxonomic, and environmental variability. Here, we used eastern cottonwood and Populus hybrids as a model system to test whether easily measurable leaf traits can serve as reliable predictors of performance, and whether adding stomatal and biochemical traits improves predictive power. Across two field sites in Mississippi, leaf mass per area (LMA), biomass production, iWUE, leaf area, and foliar nitrogen ( N %) differed significantly among taxa and sites, while other traits were conserved. Factorial analysis of mixed data (FAMD) revealed distinct clustering of taxa and sites, indicating coordinated variation among leaf and stomatal traits. Pairwise correlations highlighted fundamental trade-offs, with biomass positively related to LMA and petiole length but negatively associated with iWUE, N %, and carbon isotopic ratios (δ 13 C). Leaf temperature and leaf angle varied among taxa and were significantly correlated with LMA and petiole length, suggesting mechanisms of heat dissipation and leaf movability that link simple traits to gas exchange and productivity. Weighted multiple linear regression models explained 80%–91% of variation in biomass production and iWUE. Models using only LMA, petiole length, and stomatal metrics performed nearly as well as those incorporating N %, and δ 13 C, with complex traits adding approximately 10% explanatory power. These results demonstrate that simple morphological traits capture integrated functional trade-offs, while complex traits refine predictions. This tiered approach provides an efficient framework for selecting high-yielding, water-efficient genotypes of Populus and other hardwood species, offering practical pathways to enhance carbon uptake and iWUE under climate change.

biomass production↗

ELM model simulations of Plum Island Ecosystems LTER low marsh site 2018-2020

Model simulations using the Department of Energy's Energy Exascale Earth System Model (E3SM) land model (ELM) with improved capabilities to represent vegetation response to salinity and inundation. The simulations were conducted for a tidal salt marsh at Plum Island Ecosystems Long Term Ecological Research (LTER) site near Rowley, Massachusetts, USA; the site is a low marsh dominated by Spartina alterniflora. The model was forced with site-specific meteorology, salinity and tidal cycles from 2018-2020. Four sets of model simulations are included and described below:1. Parameterization of the salinity response function. These simulations tested different combinations of values for optimal salinity and salinity tolerance.2. Model evaluation. This comparison conducted simulations using the default model, the salinity function only, the submergence function only, and both the salinity and submergence functions. 3. Salinity scenarios. These simulations used the 2018 salinity input data varied by -5 to +10 ppt salinity.4. Water level scenarios. These simulations used the tide height varied by -10 to +50 cm. These simulations were used to demonstrate how the salinity and submergence functions better represent carbon uptake by tidal salt marshes.The data package includes netCDF files used as forcing files for tide height and salinity, one for each year 2018-2020 at observed salinity concentrations, and an additional three forcing files in which salinity concentrations were varied 5 ppt lower, 5 ppt higher, and 10 ppt higher than the measured 2018 time series. Also included are python scripts for creating forcing files, plain text parameter and command files for running simulations, model outputs in netCDF format, and python scripts for visualizing outputs. Code for the modified E3SM model is archived in Sulman et al 2023 at doi:10.15485/1991625. More detail about files is provided in the README.md file.

54 ENVIRONMENTAL SCIENCES↗

Fabrication and analysis of hydroxide/ceramic dual-phase (HCDP) membranes

Ceramic materials show potential to serve as support structures for membranes that can be used to uptake carbon dioxide from high temperature environments, like those found in nuclear flue plants. The porosity of ceramic materials allows for the infilling of those pores with molten hydroxides, that show a natural affinity for absorbing CO 2 from its surroundings. The membranes are easy to produce and were made with thickness of 0.5mm, 1.0mm, and 2.0mm. The membranes were exposed to various conditions after the infilling process and their responses were measured. The percent of hydroxides were measured after the infilled membranes had been in a tube furnace at 400°C, followed by exposure to 30 minutes of CO 2 , and lastly 4 hours of steam. Those tests yielded mole percent hydroxide results of 88.4% ± 4.6%, 68.6% ± 5.1%, and 80.7% ± 4.6%, respectively.

36 MATERIALS SCIENCE↗

Miscanthus carbon flux data for SABR and UIEF

This eddy covariance (EC) gap-filled and partitioned flux dataset for Miscanthus from the SABR and UIEF farms was collected to evaluate carbon fluxes during the establishment phase of Miscanthus. The goal of this research is to quantify net carbon exchange using the EC technique at two sites and assess how carbon uptake varies with different planting densities. The dataset is contains two .csv files.

Aslan Sungur, Guler (Rojda) [Department of Agronom↗

Dry Season Transpiration and Soil Water Dynamics in the Central Amazon

With current observations and future projections of more intense and frequent droughts in the tropics, understanding the impact that extensive dry periods may have on tree and ecosystem-level transpiration and concurrent carbon uptake has become increasingly important. Here, we investigate paired soil and tree water extraction dynamics in an old-growth upland forest in central Amazonia during the 2018 dry season. Tree water use was assessed via radial patterns of sap flow in eight dominant canopy trees, each a different species with a range in diameter, height, and wood density. Paired multi-sensor soil moisture probes used to quantify volumetric water content dynamics and soil water extraction within the upper 100 cm were installed adjacent to six of those trees. To link depth-specific water extraction patterns to root distribution, fine root biomass was assessed through the soil profile to 235 cm. To scale tree water use to the plot level (stand transpiration), basal area was measured for all trees within a 5 m radius around each soil moisture probe. The sensitivity of tree transpiration to reduced precipitation varied by tree, with some increasing and some decreasing in water use during the dry period. Tree-level water use scaled with sapwood area, from 11 to 190 L per day. Stand level water use, based on multiple plots encompassing sap flow and adjacent trees, varied from ∼1.7 to 3.3 mm per day, increasing linearly with plot basal area. Soil water extraction was dependent on root biomass, which was dense at the surface (i.e., 45% in the upper 5 cm) and declined dramatically with depth. As the dry season progressed and the upper soil dried, soil water extraction shifted to deeper levels and model projections suggest that much of the water used during the month-long dry-down could be extracted from the upper 2–3 m. Results indicate variation in rates of soil water extraction across the research area and, temporally, through the soil profile. These results provide key information on whole-tree contributions to transpiration by canopy trees as water availability changes. In addition, information on simultaneous stand level dynamics of soil water extraction that can inform mechanistic models that project tropical forest response to drought.

54 ENVIRONMENTAL SCIENCES↗

Is there warming in the pipeline? A multi-model analysis of the Zero Emissions Commitment from CO 2

Abstract. The Zero Emissions Commitment (ZEC) is the change in global mean temperature expected to occur following the cessation of net CO 2 emissions and as such is a critical parameter for calculating the remaining carbon budget. The Zero Emissions Commitment Model Intercomparison Project (ZECMIP) was established to gain a better understanding of the potential magnitude and sign of ZEC, in addition to the processes that underlie this metric. A total of 18 Earth system models of both full and intermediate complexity participated in ZECMIP. All models conducted an experiment where atmospheric CO 2 concentration increases exponentially until 1000 PgC has been emitted. Thereafter emissions are set to zero and models are configured to allow free evolution of atmospheric CO 2 concentration. Many models conducted additional second-priority simulations with different cumulative emission totals and an alternative idealized emissions pathway with a gradual transition to zero emissions. The inter-model range of ZEC 50 years after emissions cease for the 1000 PgC experiment is -0.36 to 0.29°C, with a model ensemble mean of -0.07 °C, median of -0.05°C, and standard deviation of 0.19°C. Models exhibit a wide variety of behaviours after emissions cease, with some models continuing to warm for decades to millennia and others cooling substantially. Analysis shows that both the carbon uptake by the ocean and the terrestrial biosphere are important for counteracting the warming effect from the reduction in ocean heat uptake in the decades after emissions cease. This warming effect is difficult to constrain due to high uncertainty in the efficacy of ocean heat uptake. Overall, the most likely value of ZEC on multi-decadal timescales is close to zero, consistent with previous model experiments and simple theory.

MacDougall, Andrew H.↗

A double peak in the seasonality of California's photosynthesis as observed from space

Solar-induced chlorophyll fluorescence (SIF) has been shown to be a powerful proxy for photosynthesis and gross primary productivity (GPP). The recently launched TROPOspheric Monitoring Instrument (TROPOMI) features the required spectral resolution and signal-to-noise ratio to retrieve SIF from space. Here, we present a downscaling method to obtain 500 m spatial resolution SIF over California. We report daily values based on a 14 d window. TROPOMI SIF data show a strong correspondence with daily GPP estimates at AmeriFlux sites across multiple ecosystems in California. We find a linear relationship between SIF and GPP that is largely invariant across ecosystems with an intercept that is not significantly different from zero. Measurements of SIF from TROPOMI agree with MODerate Resolution Imaging Spectroradiometer (MODIS) vegetation indices – the normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), and near-infrared reflectance of vegetation index (NIR$_v$) – at annual timescales but indicate different temporal dynamics at monthly and daily timescales. TROPOMI SIF data show a double peak in the seasonality of photosynthesis, a feature that is not present in the MODIS vegetation indices. The different seasonality in the vegetation indices may be due to a clear-sky bias in the vegetation indices, whereas previous work has shown SIF to have a low sensitivity to clouds and to detect the downregulation of photosynthesis even when plants appear green. We further decompose the spatiotemporal patterns in the SIF data based on land cover. The double peak in the seasonality of California's photosynthesis is due to two processes that are out of phase: grasses, chaparral, and oak savanna ecosystems show an April maximum, while evergreen forests peak in June. An empirical orthogonal function (EOF) analysis corroborates the phase offset and spatial patterns driving the double peak. The EOF analysis further indicates that two spatiotemporal patterns explain 84 % of the variability in the SIF data. Results shown here are promising for obtaining global GPP at sub-kilometer spatial scales and identifying the processes driving carbon uptake.

54 ENVIRONMENTAL SCIENCES↗

Fire weather compromises forestation-reliant climate mitigation pathways

Forestation can contribute to climate change mitigation. However, increasing frequency and intensity of climate extremes are posed to have profound impact on forests and consequently on the mitigation potential of forestation efforts. In this perspective, we critically assess forestation-reliant climate mitigation scenarios from five different integrated assessment models (IAMs) by showcasing the spatially explicit exposure of forests to fire weather and the simulated increase in global annual burned area. We provide a detailed description of the feedback from climate change to forest carbon uptake in IAMs. Few IAMs are currently accounting for feedback mechanisms like loss from fire disturbance. Consequently, many forestation areas proposed by IAM scenarios will be exposed to fire-promoting weather conditions and without costly prevention measures might be object to frequent burning. We conclude that the actual climate mitigation portfolio in IAM scenarios is subject to substantial uncertainty and that the risk of overly optimistic estimates of negative emission potential of forestation should be avoided. As a way forward we propose how to integrate more detailed climate information when modeling climate mitigation pathways heavily relying on forestation.

54 ENVIRONMENTAL SCIENCES↗

Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms

Microscale processes are critically important to soil ecology and biogeochemistry yet are difficult to study due to soil’s opacity and complexity. To advance the study of soil processes, we constructed transparent soil microcosms that enable the visualization of microbes via fluorescence microscopy and the non-destructive measurement of microbial activity and carbon uptake in situ via Raman microspectroscopy. We assessed the polymer Nafion and the crystal cryolite as optically transparent soil substrates. We demonstrated that both substrates enable the growth, maintenance, and visualization of microbial cells in three dimensions over time, and are compatible with stable isotope probing using Raman. We applied this system to ascertain that after a dry-down/rewetting cycle, bacteria on and near dead fungal hyphae were more metabolically active than those far from hyphae. These data underscore the impact fungi have facilitating bacterial survival in fluctuating conditions and how these microcosms can yield insights into microscale microbial activities.

59 BASIC BIOLOGICAL SCIENCES↗

Computer program for calculation of oxygen uptake

A description and operational precedures are presented for a computer program, written in Super Basic, that calculates oxygen uptake, carbon dioxide production, and related ventilation parameters. Program features include: (1) the option of entering slope and intercept values of calibration curves for the O2 and CO2 and analyzers; (2) calculation of expired water vapor pressure; and (3) the option of entering inspured O2 and CO2 concentrations. The program is easily adaptable for programmable laboratory calculators.

Castle, B. L.↗

A LEO Hyperspectral Mission Implementation for Global Carbon Cycle Observations

For both terrestrial and ocean carbon cycle science objectives, high resolution (less than l0 nm) imaging spectrometers capable of acquiring multiple regional to global scale observations per day should enable the development of new remote sensing measurements for important but as yet unobservable variables, with the overall goal of linking both terrestrial and ocean carbon cycle processes to climate variability. For terrestrial research, accurate estimates of carbon, water and energy (CWE) exchange between the terrestrial biosphere and atmosphere a needed to id- the geographical locations and temporal dynamics of carbon sources/sinks and to improve regional climate models and climate change assessments. It is an enormous challenge to estimate CWE exchange from the infrequent temporal coverage and sparse spectral information provided by most single polar-orbiting, earth-looking satellite. The available satellite observations lack a sufficient number of well-placed narrow bands from which to derive spectral indices that capture vegetation responses to stress conditions associated with down-regulation of photosynthesis. Physiological status can best be assessed with spectral indices based on continuous, narrow bands in the visible/near infrared spectra, as can seasonal and annual terrestrial productivity. For coastal and ocean constituents, narrow-band observations in the ultraviolet and visible are essential to investigate the variability, dynamics and biogeochemical cycles of the world's coastal and open ocean regions, which will in turn help in measuring ocean productivity and predicting the variability of ocean carbon uptake and its role in climate change.

Gervin, Janette C.↗