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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Field-scale mapping of California crop water productivity to inform water management in critically overdrafted groundwater basins

Crop water productivity (CWP) metrics can reveal how the dynamics of crop production and water use change across space and time. We use field-scale satellite inputs from 2016–2021 to estimate potential water savings for four crops (almonds, grapes, walnuts, and citrus—which collectively account for approximately one-third of California’s cropland area), within critically overdrafted groundwater sub-basins of California’s San Joaquin Valley. These annual estimates of field-level water savings potential are based on locally achievable CWP values for each crop type. Our findings show considerable spatial variation in CWP and potential water savings within each sub-basin. We find that increasing CWP to peak efficiency (defined as improving fields to the 95th percentile of observed CWP) for four crops could meet up to 36% of the estimated annual overdraft in San Joaquin Valley. For comparison, fallowing 5% of the four crop type fields in the same study area could potentially reduce annual overdraft by 11%. By delivering results at the field scale, our work can inform targeted interventions by irrigation district managers and more efficient allocation of state incentives for improved water management. For example, we estimate that state grant funding for water efficiency upgrades could have amplified potential water savings threefold by targeting investments to the least efficient fields.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes

The study of domestication contributes to our knowledge of evolution and crop genetic resources. Human selection has shaped wild Brassica rapa into diverse turnip, leafy, and oilseed crops. Despite its worldwide economic importance and potential as a model for understanding diversification under domestication, insights into the number of domestication events and initial crop(s) domesticated in B. rapa have been limited due to a lack of clarity about the wild or feral status of conspecific noncrop relatives. To address this gap and reconstruct the domestication history of B. rapa, we analyzed 68,468 genotyping-by-sequencing-derived single nucleotide polymorphisms for 416 samples in the largest diversity panel of domesticated and weedy B. rapa to date. To further understand the center of origin, we modeled the potential range of wild B. rapa during the mid-Holocene. Our analyses of genetic diversity across B. rapa morphotypes suggest that noncrop samples from the Caucasus, Siberia, and Italy may be truly wild, whereas those occurring in the Americas and much of Europe are feral. Clustering, tree-based analyses, and parameterized demographic inference further indicate that turnips were likely the first crop type domesticated, from which leafy types in East Asia and Europe were selected from distinct lineages. These findings clarify the domestication history and nature of wild crop genetic resources for B. rapa, which provides the first step toward investigating cases of possible parallel selection, the domestication and feralization syndrome, and novel germplasm for Brassica crop improvement.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Legacy Effects of Cropping System and Precipitation Influence the Core Camelina sativa Microbiome

Camelina ( Camelina sativa L.) is a potential biofuel crop and beneficial rotation crop in dryland cropping systems. Little is known about camelina microbiota or the legacy effect of soil origin/cropping system zones on camelina-associated microbiome assembly. To explore camelina-microbe associations, we grew camelina in the greenhouse using soil transplanted from 33 locations in the dryland wheat production area of eastern Washington. Bacterial, archaeal, and fungal communities from bulk soil, rhizosphere, and endosphere were characterized with 16S rRNA and internal transcribed spacer amplicon sequencing and were analyzed alongside site-specific climatic and edaphic data. We found that soil from the highest precipitation zone had higher alpha diversity than soil from the driest zone, but this effect was not seen in the greenhouse rhizosphere or endosphere. Plant compartment, cropping system zone, and soil origin all significantly influenced microbial composition, with soil pH and organic matter, as well as precipitation at origin, as major predictors. Analysis of abundance–occupancy distributions showed that the Actinobacteriota Aeromicrobium and Marmoricola and the fungus Pseudogymnoascus in the rhizosphere were plant-selected, while the endosphere was characterized by a number of Actinobacteriota, Rhizobium, and Clostridium. Sphingomonas amplicon sequence variants were also consistently enriched in the rhizosphere, suggesting that they are present in soils collected throughout eastern Washington and may represent good candidate biostimulants. Several lignin decomposing fungi had site-specific rhizospheric distributions, suggesting that they may be dispersal-limited or result from the legacy effect of long-term wheat cropping. Overall, this study contributes to our understanding of microbiome assembly in and on camelina roots while also highlighting the potential impact of cropping history on soil- and plant-associated microbiomes. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2025.

Barnes, Elle M↗
DOE OSTI2025

Reduced Erosion Augments Soil Carbon Storage Under Cover Crops

ABSTRACT Cover crops, a promising strategy to increase soil organic carbon (SOC) storage in croplands and mitigate climate change, have typically been shown to benefit soil carbon (C) storage from increased plant C inputs. However, input‐driven C benefits may be augmented by the reduction of C outputs induced by cover crops, a process that has been tested by individual studies but has not yet been synthesized. Here we quantified the impact of cover crops on organic C loss via soil erosion (SOC erosion) and revealed the geographical variability at the global scale. We analyzed the field data from 152 paired control and cover crop treatments from 57 published studies worldwide using meta‐analysis and machine learning. The meta‐analysis results showed that cover crops widely reduced SOC erosion by an average of 68% on an annual basis, while they increased SOC stock by 14% (0–15 cm). The absolute SOC erosion reduction ranged from 0 to 18.0 Mg C −1 ha −1 year −1 and showed no correlation with the SOC stock change that varied from −8.07 to 22.6 Mg C −1 ha −1 year −1 at 0–15 cm depth, indicating the latter more likely related to plant C inputs. The magnitude of SOC erosion reduction was dominantly determined by topographic slope. The global map generated by machine learning showed the relative effectiveness of SOC erosion reduction mainly occurred in temperate regions, including central Europe, central‐east China, and Southern South America. Our results highlight that cover crop‐induced erosion reduction can augment SOC stock to provide additive C benefits, especially in sloping and temperate croplands, for mitigating climate change.

Huang, Wenjuan [Department of Ecology, Evolution, ↗
DOE OSTI2023

Butterfly biodiversity increases with prairie strips and conservation management in row crop agriculture

Abstract Butterfly abundances are declining globally, with meta‐analysis showing a rate of −2% per year. Agriculture contributes to butterfly decline through habitat loss and degradation. Prairie strips—strips of farmland actively restored to native perennial vegetation—are a conservation practice with the potential to mitigate biodiversity loss, but their impact on butterfly biodiversity is not known. Working within a 30‐year‐old experiment that varied land use intensity, from natural areas to croplands (maize–soy–wheat rotation), we introduced prairie strips to less intensely managed crop treatments. Treatments included conservation land, biologically based (organic) row crops with prairie strips, reduced input row crops with prairie strips, no‐till row crops and conventional row crops. We measured butterfly abundance and richness: (1) within prairie strips and (2) across the gradient of land use intensity at the plot level. Butterfly abundance was higher within prairie strips than in all other treatments. Across the land use intensity gradient at the plot level, the conservation land treatment had the highest abundance, treatments with prairie strips had intermediate levels and no‐till and conventional treatments had the lowest abundances. Also across entire plots, butterfly richness increased as land use intensity decreased. Treatments with prairie strips, which also had reduced land use intensity, had distinct butterfly communities as they harboured several butterfly species that were not found in other row crop treatments. In addition to the known effects of prairie strips on ecosystem services including erosion control and increased water quality, prairie strips can increase biodiversity in multifunctional landscapes.

Kemmerling, Lindsey R.↗
DOE OSTI2021

Towards a dynamic photosynthesis model to guide yield improvement in C4 crops

Summary The most productive C4 food and biofuel crops, such as Saccharum officinarum (sugarcane), Sorghum bicolor (sorghum) and Zea mays (maize), all use NADP‐ME‐type C4 photosynthesis. Despite high productivities, these crops fall well short of the theoretical maximum solar conversion efficiency of 6%. Understanding the basis of these inefficiencies is key for bioengineering and breeding strategies to increase the sustainable productivity of these major C4 crops. Photosynthesis is studied predominantly at steady state in saturating light. In field stands of these crops light is continually changing, and often with rapid fluctuations. Although light may change in a second, the adjustment of photosynthesis may take many minutes, leading to inefficiencies. We measured the rates of CO 2 uptake and stomatal conductance of maize, sorghum and sugarcane under fluctuating light regimes. The gas exchange results were combined with a new dynamic photosynthesis model to infer the limiting factors under non‐steady‐state conditions. The dynamic photosynthesis model was developed from an existing C4 metabolic model for maize and extended to include: (i) post‐translational regulation of key photosynthetic enzymes and their temperature responses; (ii) dynamic stomatal conductance; and (iii) leaf energy balance. Testing the model outputs against measured rates of leaf CO 2 uptake and stomatal conductance in the three C4 crops indicated that Rubisco activase, the pyruvate phosphate dikinase regulatory protein and stomatal conductance are the major limitations to the efficiency of NADP‐ME‐type C4 photosynthesis during dark‐to‐high light transitions. We propose that the level of influence of these limiting factors make them targets for bioengineering the improved photosynthetic efficiency of these key crops.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Continuous cropping of potato changed the metabolic pathway of root exudates to drive rhizosphere microflora

For potato production, continuous cropping (CC) could lead to autotoxicity buildup and microflora imbalance in the field soil, which may result in failure of crops and reduction in yield. In this study, non-targeted metabolomics (via liquid chromatography with tandem mass spectrometry (LC–MS/MS)) combined with metagenomic profiling (via high-throughput amplicon sequencing) were used to evaluate correlations between metabolomics of potato root exudates and communities of bacteria and fungi around potato plants to illustrate the impacts of CC. Potato plants were grown in soil collected from fields with various CC years (0, 1, 4, and 7 years). Metabolomic analysis showed that the contents and types of potential autotoxins in potato root exudates increased significantly in CC4 and CC7 plants (i.e., grown in soils with 4 and 7 years of CC). The differentially expressed metabolites were mainly produced via alpha-linolenic acid metabolism in plant groups CC0 and CC1 (i.e., no CC or 1 year CC). The metabolomics of the groups CC4 and CC7 became dominated by styrene degradation, biosynthesis of siderophore group non-ribosomal peptides, phenylpropanoid biosynthesis, and biosynthesis of various plant secondary metabolites. Continuous cropping beyond 4 years significantly changed the bacterial and fungal communities in the soil around the potato crops, with significant reduction of beneficial bacteria and accumulation of harmful fungi. Correlations between DEMs and microflora biomarkers were established with strong significances. These results suggested that continuous cropping of potato crops changed their metabolism as reflected in the plant root exudates and drove rhizosphere microflora to directions less favorable to plant growth, and it needs to be well managed to assure potato yield.

Xing, Yanhong↗
DOE OSTI2023

Tropical Tree Crop Simulation with a Process-Based, Daily Timestep Simulation Model (ALMANAC): Description of Model Adaptation and Examples with Coffee and Cocoa Simulations

Coffee (Coffea species) and Cocoa (Theobroma cacao) are important cash crops grown in the tropics but traded globally. This study was conducted to apply the ALMANAC model to these crops for the first time, and to test its ability to simulate them under agroforestry management schemes and varying precipitation amounts. To create this simulation, coffee was grown on a site in Kaua’i, Hawai’i, USA, and cocoa was grown on a site in Sefwi Bekwai, Ghana. A stand-in for a tropical overstory tree was created for agroforestry simulations using altered parameters for carob, a common taller tropical tree for these regions. For both crops, ALMANAC was able to realistically simulate yields when compared to the collected total yield data. On Kaua’i, the mean simulated yield was 2% different from the mean measured yield, and in all three years, the simulated values were within 10% of the measured values. For cocoa, the mean simulated yield was 3% different from the mean measured yield and the simulated yield was within 10% of measured yields for all four available years. When precipitation patterns were altered, in Ghana, the wetter site showed lower percent changes in yield than the drier site in Hawai’i. When agroforestry-style management was simulated, a low Leaf Area Index (LAI) of the overstory showed positive or no effect on yields, but when LAI climbed too high, the simulation was able to show the detrimental effect this competition had on crop yields. These simulation results are supported by other literature documenting the effects of agroforestry on tropical crops. This research has applied ALMANAC to new crops and demonstrated its simulation of different management and environmental conditions. The results show promise for ALMANAC’s applicability to these scenarios as well as its potential to be further tested and utilized in new circumstances.

60 APPLIED LIFE SCIENCES↗
NASA NTRS1973

Semi-automatic crop inventory from sequential ERTS-1 imagery

The detection of a newly introduced crop into the Imperial (California) Valley by sequential ERTS-1 imagery is proving that individual crop types can be identified by remote sensing techniques. Initial results have provided an extremely useful product for water agencies. A system for the identification of field conditions enables the production of a statistical summary within two to three days of receipt of the ERTS-1 imagery. The summary indicates the total acreage of producing crops and irrigated planted crops currently demanding water and further indicates freshly plowed fields that will be demanding water in the near future. Relating the field conditions to the crop calendar of the region by means of computer techniques will provide specific crop identification for the 8000 plus fields.

Johnson, C. W.↗
NASA NTRS1977

Airborne monitoring of crop canopy temperatures for irrigation scheduling and yield prediction

The aim of the program discussed was to develop techniques for remotely measuring crop irrigation needs and predicting crop yields, with emphasis on wheat. Airborne measurements, using an IR line scanner and color IR photography, were made to evaluate the feasibility of measuring minimum and maximum (dawn and afternoon) crop temperatures to compute a parameter, termed 'stress degree day' (SDD) - a valuable indicator of crop water needs, which can be related to irrigation scheduling and yield. Crop canopy temperature measurements by airborne IR techniques revealed the superiority of thermal IR data over color IR photography. Water stress undetected in the latter technique was clearly detected in thermal imagery. Color IR photography, however, is valuable in discerning vegetation. The pseudo-colored temperature-difference images (and pseudo-colored images, reading directly in daily SDD increments) are shown to be well suited for assessing plant water status and, thus, for determining the irrigation needs and crop yield potentials.

Millard, J. P.↗
NASA NTRS1980

Crop calendars for the US, USSR, and Canada in support of the early warning project

New crop calendars are produced for U.S. regions where several years of periodic growth stage observations are available on a CRD basis. Preexisting crop calendars from the LACIE are also collected as are U.S. crop calendars currently being created for the Foreign Commodities Production Forecast project. For the U.S.S.R. and Canada, no new crop calendars are created because no new data are available. Instead, LACIE crop calendars are compared against simulated normal daily temperatures and against the Robertson wheat and Williams barley phenology models run on the simulated normal temperatures. Severe inconsistencies are noted and discussed. For the U.S.S.R., spring and fall planting dates can probably be estimated accurately from satellite or meteorological data. For the starter model problem, the Feyerherm spring wheat model is recommended for spring planted small grains, and the results of an analysis are presented. For fall planted small grains, use of normal planting dates supplemented by spectral observation of an early stage is recommended. The importance of nonmeteorological factors as they pertain to meteorological factors in determining fall planting is discussed. Crop calendar data available at the Johnson Space Center for the U.S., U.S.S.R., Canada, and other countries are inventoried.

Hodges, T.↗
NASA NTRS1981

AgRISTARS: Supporting research. US crop calendars in support of the early warning project

The crop calendars produced for the Large Area Crop Inventory Experiment (LACIE) and crop calendar samples for Colorado, Iowa, Kansas, Minnesota, Montana, Nebraska, North Dakota, South Dakota, and Texas are presented. These calendars are based on weekly crop reporting district level observations of the percentage of various crops at several growth stages. A sample of the statistical treatments of the weekly data is provided. Four to five years of 50-percent dates for stages on a crop reporting district level for Arkansas, Iowa, Kentucky, Louisiana, Michigan, Mississippi, Ohio and Wisconsin are also given.

Hodges, T.↗
NASA NTRS1983

Separability of agricultural crops with airborne scatterometry

Backscattering measurements were acquired with airborne scatterometers over a site in Cass County, North Dakota on four days in the 1981 crop growing season. Data were acquired at three frequencies (L-, C- and Ku-bands), two polarizations (like and cross) and ten incidence angles (5 degrees to 50 degrees in 5 degree steps). Crop separability is studied in an hierarchical fashion. A two-class separability measure is defined, which compares within-class to between-class variability, to determine crop separability. The scatterometer channels with the best potential for crop separability are determined, based on this separability measure. Higher frequencies are more useful for discriminating small grains, while lower frequencies tend to separate non-small grains better. Some crops are more separable when row direction is taken into account. The effect of pixel purity is to increase the separability between all crops while not changing the order of useful scatterometer channels. Crude estimates of separability errors are calculated based on these analyses. These results are useful in selecting the parameters of active microwave systems in agricultural remote sensing.

Mehta, N. C.↗
NASA NTRS1984

Benchmark data on the separability among crops in the southern San Joaquin Valley of California

Landsat MSS data were input to a discriminant analysis of 21 crops on each of eight dates in 1979 using a total of 4,142 fields in southern Fresno County, California. The 21 crops, which together account for over 70 percent of the agricultural acreage in the southern San Joaquin Valley, were analyzed to quantify the spectral separability, defined as omission error, between all pairs of crops. On each date the fields were segregated into six groups based on the mean value of the MSS7/MSS5 ratio, which is correlated with green biomass. Discriminant analysis was run on each group on each date. The resulting contingency tables offer information that can be profitably used in conjunction with crop calendars to pick the best dates for a classification. The tables show expected percent correct classification and error rates for all the crops. The patterns in the contingency tables show that the percent correct classification for crops generally increases with the amount of greenness in the fields being classified. However, there are exceptions to this general rule, notably grain.

Morse, A.↗
NASA NTRS1986

Early warning and crop condition assessment research

The Early Warning Crop Condition Assessment Project of AgRISTARS was a multiagency and multidisciplinary effort. Its mission and objectives were centered around development and testing of remote-sensing techniques that enhance operational methodologies for global crop-condition assessments. The project developed crop stress indicators models that provide data filter and alert capabilities for monitoring global agricultural conditions. The project developed a technique for using NOAA-n satellite advanced very-high-resolution radiometer (AVHRR) data for operational crop-condition assessments. This technology was transferred to the Foreign Agricultural Service of the USDA. The project developed a U.S. Great Plains data base that contains various meteorological parameters and vegetative index numbers (VIN) derived from AVHRR satellite data. It developed cloud screening techniques and scan angle correction models for AVHRR data. It also developed technology for using remotely acquired thermal data for crop water stress indicator modeling. The project provided basic technology including spectral characteristics of soils, water, stressed and nonstressed crop and range vegetation, solar zenith angle, and atmospheric and canopy structure effects.

Boatwright, G. O.↗
NASA NTRS1990

AVHRR monitoring of U.S. crops during the 1988 drought

Effects of the 1988 drought on crops in the U.S. Corn Belt were assessed and monitored by the Foreign Crop Condition Assessment Division (FCCAD), U.S. Department of Agriculture. The primary data were vegetation index numbers (VINs), each of which was calculated as an average vegetation index of a geographically referenced cell of AVHRR pixels. Using VINs, the FCCAD was able to detect the existence of drought early in the season, monitor changing conditions, and provide objective assessments of the drought's extent and severity. Field observations confirmed the image analyses, and underlined the importance of the timing of extreme weather events with respect to crop stages for interpreting VINs. The analyses were conducted in an operational environment, providing a unique test of the AVHRR data for large area, near real-time crop monitoring. Because large area, operational remote sensing of crops is quite different from traditional, controlled, small plot research studies, more work is needed to link the two; this would improve crop assessment capabilities.

Teng, William L.↗
NASA NTRS1992

Crop growth and associated life support for a lunar farm

Supporting human life on a lunar base will require growing many different food crops. This paper investigates the growth dynamics of four crops (wheat, soybeans, potatoes, and lettuce) for general similarities and differences, along with associated material flows of the gases, liquids, and solids in a lunar farm. The human dietary requirements are compared with the protein, carbohydrate, and lipid contents of these hydroponically grown, high-productivity crops to derive a lunar farm diet. A simple and general analytical model is used to calculate the mass fluxes of CO2, H2O, HNO3, and O2 during the life cycle of each of the four crops. The resulting farm crop areas and corresponding biomass production rates are given. One significant conclusion of this study is that there is a 'lipid problem' associated with the incorporation of these four crops into a viable diet.

Volk, Tyler↗
NASA NTRS1992

The dynamics of hydroponic crops for simulation studies of the CELSS initial reference configurations

The goal of this research is to develop a progressive series of mathematical models for the CELSS hydroponic crops. These models will systematize the experimental findings from the crop researchers in the CELSS Program into a form useful to investigate system-level considerations, for example, dynamic studies of the CELSS Initial Reference Configurations. The crop models will organize data from different crops into a common modeling framework. This is the fifth semiannual report for this project. The following topics are discussed: (1) use of field crop models to explore phasic control of CELSS crops for optimizing yield; (2) seminar presented at Purdue CELSS NSCORT; and (3) paper submitted on analysis of bioprocessing of inedible plant materials.

Volk, Tyler↗