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At least 199 records · Page 11

Charged Pion Production Explorations Using the NOvA Near Detector

Measurements of neutrino-nucleus interactions in the few-GeV region provide crucial inputs to the neutrino oscillation program being carried out by currently running experiments (NOvA, SBN, T2K), and next-generation experiments (DUNE, 2HK). This poster presents the status of a measurement using the high-intensity NuMI beam and the NOvA Near Detector of the flux-integrated differential cross-section in pion kinetic energy for $\nu_\mu + N \rightarrow \mu^- + \pi^\pm + X$, where X does not include any charged pions. This signal is sensitive to inelastic processes with Delta resonance production, which dominate at neutrino energies relevant for NOvA and DUNE. To overcome the difficulty of reconstructing the energy of charged pions in a lower-spatial-resolution detector, a novel analysis technique is used that incorporates a multi-template fit to extract the number of events for two signal categories that differ from one another by their purity and resolution. The two signal categories are combined leveraging their complementary errors into a more informative cross section result.

Ewart, Erin [Indiana U.]↗

The chromatin remodeler ADNP regulates neurodevelopmental disorder risk genes and neocortical neurogenesis

Although chromatin remodelers are among the most important risk genes associated with neurodevelopmental disorders (NDDs), the roles of these complexes during brain development are in many cases unclear. Here, we focused on the recently discovered ChAHP chromatin remodeling complex. The zinc finger and homeodomain transcription factor ADNP is a core subunit of this complex, and de novoADNPmutations lead to intellectual disability and autism spectrum disorder. However, germlineAdnpknockout mice were previously shown to exhibit early embryonic lethality, obscuring subsequent roles for the ChAHP complex in neurogenesis. To circumvent this early developmental arrest, we generated a conditionalAdnpmutant allele. Using single-cell transcriptomics, cut&run-seq, and histological approaches, we show that during neocortical development, Adnp orchestrates the production of late-born, upper-layer neurons through a two-step process. First, Adnp is required to sustain progenitor proliferation specifically during the developmental window for upper-layer cortical neurogenesis. Accordingly, we found that Adnp recruits the ChAHP subunit Chd4 to genes associated with progenitor proliferation. Second, in postmitotic differentiated neurons, we define a network of risk genes linked to NDDs that are regulated by Adnp and Chd4. Taken together, these data demonstrate that ChAHP is critical for driving the expansion of upper-layer cortical neurons and for regulating neuronal gene expression programs, suggesting that these processes may potentially contribute to NDD etiology.

Science & Technology - Other Topics↗

Conformation-specific synthetic intrabodies modulate mTOR signaling with subcellular spatial resolution

Subcellular compartmentalization is integral to the spatial regulation of mechanistic target of rapamycin (mTOR) signaling. However, the biological outputs associated with location-specific mTOR signaling events are poorly understood and challenging to decouple. Here, we engineered synthetic intracellular antibodies (intrabodies) that are capable of modulating mTOR signaling with genetically programmable spatial resolution. Epitope-directed phage display was exploited to generate high affinity synthetic antibody fragments (Fabs) against the FKBP12–Rapamycin binding site of mTOR (mTOR FRB ). We determined high-resolution crystal structures of two unique Fabs that discriminate distinct conformational states of mTOR FRB through recognition of its substrate recruitment interface. By leveraging these conformation-specific binders as intracellular probes, we uncovered the structural basis for an allosteric mechanism governing mTOR complex 1 (mTORC1) stability mediated by subtle structural adjustments within mTOR FRB . Furthermore, our results demonstrated that synthetic binders emulate natural substrates by employing divergent yet complementary hydrophobic residues at defined positions, underscoring the broad molecular recognition capability of mTOR FRB . Intracellular signaling studies showed differential time-dependent inhibition of S6 kinase 1 and Akt phosphorylation by genetically encoded intrabodies, thus supporting a mechanism of inhibition analogous to the natural product rapamycin. Finally, we implemented a feasible approach to selectively modulate mTOR signaling in the nucleus through spatially programmed intrabody expression. These findings establish intrabodies as versatile tools for dissecting the conformational regulation of mTORC1 and should be useful to explore how location-specific mTOR signaling influences disease progression.

Science & Technology - Other Topics↗

Technical Guidance on Use of the Linseis Vertical Dilatometer L75

Linseis vertical Dilatometer L75 thermal expansion equipment is a complete system which can be used for measuring change of the absolute length of a sample, determination of the thermal expansion coefficient (CTE), shrinkage, and sintering. The 238 Pu Supply Program is interested in re-establishing the capability to determine CTE and measuring the change of the absolute length of various 237 Np Al/cermet samples during heating. The change in length of the measured sample is recorded using a highly sensitive Linear Variable Differential Transformer (LVDT). The dilatometer is user-friendly and simple to operate which will allow technicians to be trained easily on its use. This equipment was designed to be used specifically for ceramics. It has a highly vacuum tight push rod dilatometer, a high-resolution inductive transducer using innovative and comprehensive temperature controls which provide excellent performance as a measurement system yielding high accuracy, reproducibility, and long-term stability.

07 ISOTOPE AND RADIATION SOURCES↗

Measurement of cross sections for mesonless charged-current muon neutrino interactions on argon with and without protons at MicroBooNE

urrent and upcoming neutrino experiments at Fermilab will rely on liquid argon time projection chambers (LArTPCs) as the primary detector technology. To reach the ambitious precision required for their physics goals, a detailed understanding of neutrino-argon scattering must be achieved. For the present Short-Baseline Neutrino program, the dominant reaction channel is charged-current muon neutrino interactions leading to mesonless final states with and without protons. Using a large data set of neutrino interactions recorded by the MicroBooNE LArTPC detector at Fermilab, we report progress towards new measurements of differential cross sections in this channel. The analysis leverages multiple event reconstruction paradigms and observables specifically chosen to maximize sensitivity to nuclear effects of interest for improving neutrino scattering models. Related previous cross-section results from MicroBooNE and a preview of what to expect from the new analysis will both be featured in this presentation.

Liu, Liang [Fermilab]↗

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes

One of the main steps in gene-finding in prokaryotes is determining which open reading frames encode for a protein, and which occur by chance alone. There are many different methods to differentiate the two; the most prevalent approach is using shared homology with a database of known genes. This method presents many pitfalls, most notably the catch that you only find genes that you have seen before. The four most popular prokaryotic gene-prediction programs (GeneMark, Glimmer, Prodigal, Phanotate) all use a protein-coding training model to predict protein-coding genes, with the latter three allowing for the training model to be created ab initio from the input genome. Different methods are available for creating the training model, and to increase the accuracy of such tools, we present here GOODORFS, a method for identifying protein-coding genes within a set of all possible open reading frames (ORFS). Our workflow begins with taking the amino acid frequencies of each ORF, calculating an entropy density profile (EDP), using KMeans to cluster the EDPs, and then selecting the cluster with the lowest variation as the coding ORFs. To test the efficacy of our method, we ran GOODORFS on 14,179 annotated phage genomes, and compared our results to the initial training-set creation step of four other similar methods (Glimmer, MED2, PHANOTATE, Prodigal). We found that GOODORFS was the most accurate (0.94) and had the best F1-score (0.85), while Glimmer had the highest precision (0.92) and PHANOTATE had the highest recall (0.96).

59 BASIC BIOLOGICAL SCIENCES↗

The Need for a New LLNL Pulsed Sphere Neutron Leakage Spectra Series

Here, it is shown that spectra measured as part of the Lawrence Livermore National Laboratory Pulsed Sphere (LPS) program offer decisive information to locate formatting or physics issues in nuclear data of key interest for fusion reactor simulations. However, experiments from this measurement series are not benchmarks. For instance, their uncertainties are incomplete. There are also many open questions—e.g., on the setup, the detector response, and whether LPS are accurately modeled—that cannot be answered anymore given the limited documentation and that many of the experimenters are no longer actively working. This limited knowledge has implications when one tries to adjust nuclear data to LPS spectra. Usually, one adjusts to benchmarks representing an application with the hope to get more precise nuclear data for the application of interest where differential data might be scarce and/or to reduce nuclear data uncertainties in the application simulations. However, it is demonstrated that adjustment with LPS spectra without accounting for missing uncertainties and modeling potential biases in the experimental data leads to adjusted data that are highly unphysical. That means adjusted data differ significantly from evaluated data based on information from differential experiments; also, application quantities predicted with the adjusted data deviate distinctly from experimental ones. While we can approximate our limited knowledge on these experiments with Gaussian processes in the adjustment process, this modeling of bias is arbitrary rather than based on a physics explanation, calling into doubt the validity of resulting adjusted data. Thus, we discuss here the need for a new measurement series, learning from the strengths and weaknesses of the LPS program, to yield decisive and well-benchmarked integral experiments to support fusion reactor research.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Non-local slicing approaches for NNLO QCD in MCFM

We present the implementation of several processes at Next-to-Next-to Leading Order (NNLO) accuracy in QCD in the parton-level Monte Carlo program MCFM. The processes treated are pp → H, W ± , Z, W ± H, ZH, W ± γ, Zγ and γγ and, for the first time in the code, W + W - , W ± Z and ZZ. Decays of the unstable bosons are fully included, resulting in a flexible fully differential Monte Carlo code. The NNLO corrections have been calculated using two non-local slicing approaches, isolating the doubly unresolved region by cutting on the zero-jettiness, $\mathscr{T}_0$, or on q T , the transverse momentum of the colour singlet final-state particles. We find that for most, but not all processes the q T slicing method leads to smaller power corrections for equal computational burden.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Bayesian Optimization Framework for Imperfect Data or Models

Conventional Bayesian optimization methods implicitly assume that the data and model being optimized are “perfect.” This assumption leads to inaccurate posterior probability distribution functions (PDFs) when applied to “imperfect” data or models. The new Bayesian optimization framework presented in this report provides a way to parameterize the effect of imperfections usually encountered in a prior PDF of generalized data or a model on the posterior PDF. The effects of imperfections are parameterized by a set of constraints imposed on the posterior expectation values of deviations between the data and the model and on their covariance matrix elements. A particular set of values for these constraints conveys an evaluator’s best estimate of the effect of imperfections on the corresponding posterior expectation values. When a prior PDF of generalized data is assumed to be normal, an expression for a posterior PDF satisfying an arbitrary set of constraints is derived analytically for linear models. An analogous iterative algorithm is given for nonlinear models. The corresponding posterior PDF should be used to estimate any posterior expectation values in the presence of imperfections parameterized by that set of constraints. A posterior PDF of a conventional Bayesian optimization method is recovered analytically when all evaluator-specified constraints are set to zero (i.e., in the absence of any imperfections). The analytical expressions derived in this report for normal PDFs and linear models were verified numerically by a Metropolis–Hastings Monte Carlo method. The methods presented herein could be applied to any kind of data or models, including differential cross-section data or integral benchmark experiments.

97 MATHEMATICS AND COMPUTING↗

181 Ta - fast neutron evaluation [Slides]

Reliable fast-neutron evaluation can be entirely encapsulated in the reaction model and related input. Ta181 is a particularly relevant case due to extraordinary coverage of various observables by differential experiments that offer much help and relatively little headache. Differences from the similar ENDF/B-VIII evaluation include: more advanced modeling (CC OMP, MSD, MSC, decay schemes), more careful selection of models and parameters, new experimental data, and isomers. Overall, improved agreement with differential data and hints of better performance in integral testing.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Quantization: History and problems

In this work, I explore the concept of quantization as a mapping from classical phase space functions to quantum operators. I discuss the early history of this notion of quantization with emphasis on the works of Schrödinger and Dirac, and how quantization fit into their overall understanding of quantum theory in the 1920's. Dirac, in particular, proposed a quantization map which should satisfy certain properties, including the property that quantum commutators should be related to classical Poisson brackets in a particular way. However, in 1946, Groenewold proved that Dirac's mapping was inconsistent, making the problem of defining a rigorous quantization map more elusive than originally expected. This result, known as the Groenewold-Van Hove theorem, is not often discussed in physics texts, but here I will give an account of the theorem and what it means for potential ``corrections” to Dirac's scheme. Other proposals for quantization have arisen over the years, the first major one being that of Weyl in 1927, which was later developed by many, including Groenewold, and which has since become known as Weyl Quantization in the mathematical literature. Another, known as Geometric Quantization, formulates quantization in differential-geometric terms by appealing to the character of classical phase spaces as symplectic manifolds; this approach began with the work of Souriau, Kostant, and Kirillov in the 1960's. I will describe these proposals for quantization and comment on their relation to Dirac's original program. Along the way, the problem of operator ordering and of quantizing in curvilinear coordinates will be described, since these are natural questions that immediately present themselves when thinking about quantization.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Update on 17 O evaluation and fast neutron evaluation for 181 Ta [Slides]

Reliable fast-neutron evaluation can be entirely encapsulated in the reaction model and related input. Ta181 is a particularly relevant case due to extraordinary coverage of various observables by differential experiments that offer much help and relatively little headache. Differences from the similar ENDF/B-VIII evaluation are as follows: more advanced modeling (CC OMP, MSD, MSC, decay schemes), more careful selection of models and parameters, new experimental data, and isomers. Overall, there is improved agreement with differential data and hints of better performance in integral testing.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Resolved Resonance Region Analysis of 206 Pb, 207 Pb, and 208 Pb for Next Generation Lead-Cooled Fast Systems

Recently, great interest has been generated in using lead as a coolant for fast neutron systems and as a result it is important to investigate the ENDF/B-VIII.0 isotopic evaluations that comprise stable le ad. To this end, resonance parameters for 206 Pb, 207 Pb, and 208 Pb were re-evaluated because their resolved reso­nance regions extend beyond 0.5 MeV meaning resonance parameters used in reconstructing cross sections and elastic scattering angular distributions impact fast systems. The impact of resonance parameters is demon­strated by the differences between the evaluations in predicting experimental results from the fully modeled RPI Quasi-Differential Scattering Experiment via MCNPv6.2. In addition, MCNP KCODE calculations of lead-sensitive fast spectra critical benchmarks showed variations of keff on average of 400 pcm, caused solely from differences in elastic scattering angular distributions in 208 Pb. Re-evaluation entailed fitting data with the program SAMMY.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Spectra and mean multiplicities of $π^-$ in central 40 Ar+ 45 Sc collisions at 13A, 19A, 30A, 40A, 75A and 150A Ge V / c beam momenta measured by the NA61/SHINE spectrometer at the CERN SPS

The physics goal of the strong interaction program of the NA61/SHINE experiment at the CERN Super Proton Synchrotron (SPS) is to study the phase diagram of hadronic matter by a scan of particle production in collisions of nuclei with various sizes at a set of energies covering the SPS energy range. This paper presents differential inclusive spectra of transverse momentum, transverse mass and rapidity of π - mesons produced in central 40 Ar+ 45 Sc collisions at beam momenta of 13A, 19A, 30A, 40A, 75A and 150A Ge V /c. Energy and system size dependence of parameters of these distributions – mean transverse mass, the inverse slope parameter of transverse mass spectra, width of the rapidity distribution and mean multiplicity – are presented and discussed. Furthermore, the dependence of the ratio of the mean number of produced pions to the mean number of wounded nucleons on the collision energy was derived. The results are compared to predictions of several models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Simultaneous Observations of Surface Layer Profiles of Humidity, Temperature, and Wind Using Scanning Lidar Instruments

We demonstrate the combination of three Doppler lidars (DLs), a water vapor differential absorption lidar and a temperature rotational Raman lidar for the investigation of the interactions between the land-surface and the atmospheric boundary layer. This combination of scanning lidars was operated for the first time during the Land-Atmosphere Feedback Experiment at the Atmospheric Radiation Measurement program's Southern Great Plain site, Oklahoma, USA, in August 2017, and provided simultaneous surface layer profiles of horizontal wind, humidity and temperature. The horizontal wind profiles were determined using the dual-Doppler method with two DLs. The scans were performed above four towers providing atmospheric variables and fluxes. These combined lidar data allowed for the estimation of the friction velocity as well as the surface latent and sensible heat fluxes. For this purpose, profiles calculated with Monin-Obukhov similarity theory were fitted with the Levenberg-Marquardt nonlinear least squares curve-fitting method to the measured surface-layer lidar profiles. We present case studies of three 50-min periods to illustrate the new method. The measurements resulted in friction velocities of 0.31, 0.29, and 0.38 ms –1 , sensible surface heat fluxes of 312.1, 234.1, and 183.3 Wm –2 and latent surface heat fluxes of 251.8, 227.3, and 274.4 Wm –2 . These values were compared with the in-situ measurements of the towers. Considering the sampling differences and the error analyses, the results agree within 25.1%, 42.5%, and 28.8%, respectively, demonstrating that this synergy of scanning active remote sensing systems can be used to derive surface fluxes with reasonable accuracy.

54 ENVIRONMENTAL SCIENCES↗

Mathematical solutions in internal dose assessment: A comparison of Python-based differential equation solvers in biokinetic modeling

Abstract In biokinetic modeling systems employed for radiation protection, biological retention and excretion have been modeled as a series of discretized compartments representing the organs and tissues of the human body. Fractional retention and excretion in these organ and tissue systems have been mathematically governed by a series of coupled first-order ordinary differential equations (ODEs). The coupled ODE systems comprising the biokinetic models are usually stiff due to the severe difference between rapid and slow transfers between compartments. In this study, the capabilities of solving a complex coupled system of ODEs for biokinetic modeling were evaluated by comparing different Python programming language solvers and solving methods with the motivation of establishing a framework that enables multi-level analysis. The stability of the solvers was analyzed to select the best performers for solving the biokinetic problems. A Python-based linear algebraic method was also explored to examine how the numerical methods deviated from an analytical or semi-analytical method. Results demonstrated that customized implicit methods resulted in an enhanced stable solution for the inhaled 60 Co (Type M) and 131 I (Type F) exposure scenarios for the inhalation pathway of the International Commission on Radiological Protection (ICRP) Publication 130 Human Respiratory Tract Model (HRTM). The customized implementation of the Python-based implicit solvers resulted in approximately consistent solutions with the Python-based matrix exponential method ( expm ). The differences generally observed between the implicit solvers and expm are attributable to numerical precision and the order of numerical approximation of the numerical solvers. This study provides the first analysis of a list of Python ODE solvers and methods by comparing their usage for solving biokinetic models using the ICRP Publication 130 HRTM and provides a framework for the selection of the most appropriate ODE solvers and methods in Python language to implement for modeling the distribution of internal radioactivity.

61 RADIATION PROTECTION AND DOSIMETRY↗

BISON Robustness and Performance Improvements

BISON is a modern finite-element based nuclear fuel performance code that has been under development at the Idaho National Laboratory (USA) since 2009 [1]. The code is applicable to both steady and transient fuel behavior and can be used to analyze 1D (spherically symmetric), 2D (axisymmetric and generalized plane strain) or 3D geometries. BISON is the fuel performance code used within CASL for LWR fuel under both normal operating and accident conditions. BISON is built using the INL Multiphysics ObjectOriented Simulation Environment, or MOOSE [2, 3]. MOOSE is a massively parallel, finite element-based framework to solve systems of coupled non-linear partial differential equations using the Jacobian-Free Newton Krylov (JFNK) method [4]. This enables investigation of computationally large problems, for example a full stack of discrete pellets in a LWR fuel rod, or every rod in a full reactor core. MOOSE supports the use of complex two and three-dimensional meshes and uses implicit time integration, important for the widely varied time scale in nuclear fuel simulation. An object-oriented architecture is employed which greatly minimizes the programming effort required to add new material and behavioral models. The flexibility of the implicit and fully coupled multiphysics approach comes with a need for constructing suitable approximations for the Jacobian matrix of the coupled system used for either preconditioning a Krylov solve or in a direct Newton solve. Preconditioning options for Bison problems need to be revisited with new preconditioning methods becoming available.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Covariation of Slab Tracers, Volatiles, and Oxidation During Subduction Initiation

Abstract Subduction‐related lavas have higher Fe 3+ /∑Fe than midocean ridge basalts (MORB). Hypotheses for this offset include imprint from subducting slabs and differentiation in thickened crust. These ideas are readily tested through examination of the time‐dependent evolution of slab‐derived signatures, thickening crust of the overriding plate, and evolving redox during subduction initiation. Here, we present Fe 3+ /ΣFe and volatile element abundances of volcanic glasses recovered from International Ocean Discovery Program (IODP) Expedition 352 to the Izu‐Bonin‐Mariana (IBM) forearc. The samples include forearc basalts (FAB) that are stratigraphically overlain by low‐ and high‐silica boninite lavas. The FAB glasses have 0.18–0.85 wt% H 2 O, 75–233 ppm CO 2 , S contents controlled by saturation with a sulfide phase (602–1,386 ppm), Ba/La from 3.9‐10, and Fe 3+ /ΣFe ratios from 0.136 to 0.177. These compositions are similar to MORB and suggest that decompression melting of dry and reduced mantle dominates the earliest stages of subduction initiation. Low‐ and high‐silica boninite glasses have 1.51–3.19 wt% H 2 O, CO 2 below detection, S contents below those required for sulfide saturation (5–235 ppm), Ba/La from 11 to 29, and Fe 3+ /∑Fe from 0.181 to 0.225. The compositions are broadly similar to modern arc lavas in the IBM arc. These data demonstrate that the establishment of fluid‐fluxed melting of the mantle, which occurs in just 0.6–1.2 my after subduction initiation, is synchronous with the production of oxidized, mantle‐derived magmas. The coherence of high Fe 3+ /∑Fe and Ba/La ratios with high H 2 O contents in Expedition 352 glasses and the modern IBM arc rocks strongly links the production of oxidized arc magmas to signatures of slab dehydration.

Brounce, Maryjo↗