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At least 199 records · Page 11

Testing approximations for non-linear gravitational clustering

The accuracy of various analytic approximations for following the evolution of cosmological density fluctuations into the nonlinear regime is investigated. The Zel'dovich approximation is found to be consistently the best approximation scheme. It is extremely accurate for power spectra characterized by n = -1 or less; when the approximation is 'enhanced' by truncating highly nonlinear Fourier modes the approximation is excellent even for n = +1. The performance of linear theory is less spectrum-dependent, but this approximation is less accurate than the Zel'dovich one for all cases because of the failure to treat dynamics. The lognormal approximation generally provides a very poor fit to the spatial pattern.

Coles, Peter↗

Improving Estimation of the Koopman Operator with Kolmogorov–Smirnov Indicator Functions

It has become common to perform kinetic analysis using approximate Koopman operators that transform high-dimensional timeseries of observables into ranked dynamical modes. The key to the practical success of the approach is the identification of a set of observables that form a good basis on which to expand the slow relaxation modes. Good observables are, however, difficult to identify a priori and suboptimal choices can lead to significant underestimations of characteristic time scales. Leveraging the representation of slow dynamics in terms of Hidden Markov Models (HMM), we propose a simple and computationally efficient clustering procedure to infer surrogate observables that form a good basis for slow modes. Here, we apply the approach to an analytically solvable model system as well as on three protein systems of different complexities. We consistently demonstrate that the inferred indicator functions can significantly improve the estimation of the leading eigenvalues of Koopman operators and correctly identify key states and transition time scales of stochastic systems, even when good observables are not known a priori.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Hybrid Correlation Energy (HyCE): An Approach Based on Separate Evaluations of Internal and External Components

In this work, a novel hybrid correlation energy (HyCE) approach is proposed that determines the total correlation energy via distinct computation of its internal and external components. This approach evolved from two related studies. First, rigorous assessment of the accuracies and size extensivities of a number of electron correlation methods, that include perturbation theory (PT2), coupled-cluster (CC), configuration interaction (CI), and coupled electron pair approximation (CEPA), shows that the CEPA(0) variant of the latter and triples-corrected CC methods consistently perform very similarly. These findings were obtained by comparison to near full CI results for four small molecules and by charting recovered correlation energies for six steadily growing chain systems. Second, by generating valence virtual orbitals (VVOs) and utilizing the CEPA(0) method, we were able to partition total correlation energies into internal (or nondynamic) and external (or dynamic) parts for the aforementioned six chain systems and a benchmark test bed of 36 molecules. When using triple-ζ basis sets it was found that per orbital internal correlation energies were appreciably larger than per orbital external energies and that the former showed far more chemical variation than the latter. Additionally, accumulations of external correlation energies were seen to proceed smoothly, and somewhat linearly, as the virtual space is gradually increased. Combination of these two studies led to development of the HyCE approach, whereby the internal and external correlation energies are determined separately by CEPA(0)/VVO and PT2/external calculations, respectively. When applied to the six chain systems and the 36-molecule benchmark test set it was found that HyCE energies followed closely those of triples-corrected CC and CEPA(0) while easily outperforming MP2 and CCSD. Lastly, the success of the HyCE approach is more notable when considering that its cost is only slightly more than MP2 and significantly cheaper than the CC approaches.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Sunspots and the physics of magnetic flux tubes. I - The general nature of the sunspot. II - Aerodynamic drag

Analysis of the dynamical stability of a large flux tube suggests that the field of a sunspot must divide into many separate tubes within the first 1000 km below the surface. Buoyancy of the Wilson depression at the visible surface and probably also a downdraft beneath the sunspot hold the separate tubes in a loose cluster. Convective generation of Alfven waves, which are emitted preferentially downward, cools the tubes. Aerodynamic drag on a slender flux tube stretched vertically across a convective cell is also studied. Since the drag is approximately proportional to the local kinetic energy density, the density stratification weights the drag in favor of the upper layers. Horizontal motions concentrated in the bottom of the convective cell may reverse this density effect. A downdraft of about two km/sec through the flux tubes beneath the sunspot is hypothesized.

Parker, E. N.↗

Environmental effects on galaxies in clusters

Influences from the cluster environment build up steadily over long times so that the internal dynamics of a galaxy in a cluster change appreciably over a cluster crossing time. The galaxy can no longer be considered as an isolated object. Slow rotation of elliptical galaxies and observations on galaxy alignment within clusters of galaxies provide two independent pieces of observational evidence for cluster influence. A first cut at studying cluster influences on the internal dynamics of galaxies is presented by means of numerical experiments started from a rotating barlike galaxy placed in an external force field like that which a galaxy sees in a cluster. Both pattern motion and observable rotation are tidally braked by the cluster force field. The experiments verify that the braking rate scales inversely as the square of the cluster crossing time. Systematic internal motions are reduced so that observational V/sigma is less than 0.2, in agreement with observations on elliptical galaxies but sharply reduced from V/sigma of approximately 1.0 for the original model. The final shapes of tidally braked galaxies need not be spherical.

Miller, R. H.↗

Molecular dynamics study of interstitial He clusters in nickel

This study presents a molecular dynamics analysis focusing on the behavior of interstitial helium (He) clusters in nickel (Ni), examining their formation, stability, and migration energetics. Consistent with previous research, we found that the binding energies of interstitial helium within a helium cluster are positive and increase with the cluster size, indicating a preference for helium atoms to cluster together. However, our findings also reveal that while the formation energy increases monotonically with cluster size, the increase in binding energy is non-monotonic. Importantly, small He clusters were observed to be thermally unstable at reactor operational temperatures (approximately 600 K), with the He 2 cluster exhibiting instability even at room temperature. With a binding energy of 0.49 eV for a He 4 cluster, we hypothesize that for helium bubbles to form via homogeneous nucleation (i.e., through trap mutation) at reactor operating temperatures, the helium concentration must be high enough to facilitate the formation of helium clusters of at least size 4 or larger. As expected, interstitial helium and small helium clusters are highly mobile. This mobility was observed not only at room temperature but also at temperatures as low as approximately 200 K. Furthermore, the mean squared displacement method has been utilized to determine the migration barriers and the corresponding prefactors for clusters ranging from He 1 to He 6

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Using spin alignment of inelastically excited nuclei in fast beams to assign spins: The spectroscopy of 13 O as a test case

Excited states in O 13 were investigated using inelastic scattering of an E / A = 69.5 MeV O 13 beam off of a Be 9 target. The excited states were identified in the invariant-mass spectra of the decay products. Both single-proton and sequential two-proton decays of the excited states were examined. Furthermore, for a number of the excited states, the protons were emitted with strong anisotropy where emissions transverse to the beam axis are favored. The measured proton-decay angular distributions were compared to predictions from distorted-wave Born-approximation calculations of the spin alignment which was shown to be largely independent of the excitation mechanism. The deduced O 13 level scheme is compared to ab initio no-core shell model with continuum predictions. The lowest-energy excited states decay isotropically consistent with predictions of strong proton 1 s 1 / 2 structure. Above these states in the level scheme, we observed a number of higher-spin states not predicted within the model. Possibly these are associated with rotational bands built on deformed cluster configurations predicted by antisymmetrized molecular dynamics calculations. The spin alignment mechanism is shown to be useful for making spin assignments and may have widespread use.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Absolute shielding scales for Al, Ga, and In and revised nuclear magnetic dipole moments of {sup 27}Al, {sup 69}Ga, {sup 71}Ga, {sup 113}In, and {sup 115}In nuclei

We present coupled cluster calculations of NMR shielding constants of aluminum, gallium, and indium in water-ion clusters. In addition, relativistic and dynamical corrections and the influence of the second solvation shell are evaluated. The final NMR shielding constants define new absolute shielding scales, 600.0 ± 4.1 ppm, 2044.4 ± 31.4 ppm, and 4507.7 ± 63.7 ppm for aluminum, gallium, and indium, respectively. The nuclear magnetic dipole moments for {sup 27}Al, {sup 69}Ga, {sup 71}Ga, {sup 113}In, and {sup 115}In isotopes are corrected by combining the computed shielding constants with experimental NMR frequencies. The absolute magnitude of the correction increases along the series and for indium isotopes it reaches approximately −8.0 × 10{sup −3} of the nuclear magneton.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Scalable pCT Image Reconstruction Delivered as a Cloud Service

We describe a cloud-based medical image reconstruction service designed to meet a real-time and daily demand to reconstruct thousands of images from proton cancer treatment facilities worldwide. Rapid reconstruction of a three-dimensional Proton Computed Tomography (pCT) image can require the transfer of 100 GB of data and use of approximately 120 GPU-enabled compute nodes. The nature of proton therapy means that demand for such a service is sporadic and comes from potentially hundreds of clients worldwide. We thus explore the use of a commercial cloud as a scalable and cost-efficient platform for pCT reconstruction. To address the high performance requirements of this application we leverage Amazon Web Services' GPU-enabled cluster resources that are provisioned with high performance networks between nodes. To support episodic demand, we develop an on-demand multi-user provisioning service that can dynamically provision and resize clusters based on image reconstruction requirements, priorities, and wait times. We compare the performance of our pCT reconstruction service running on commercial cloud resources with that of the same application on dedicated local high performance computing resources. We show that we can achieve scalable and on-demand reconstruction of large scale pCT images for simultaneous multi-client requests, processing images in less than 10 minutes for less than $10 per image.

Cloud computing↗

3-D Reconstruction of Macular Type II Cell Innervation Patterns in Space-Flight and Control Rats

A semiautomated method for reconstructing objects from serial thin sections has been developed in the Biocomputation Center. The method is being used to completely, for the first time, type II hair cells and their innervations. The purposes are to learn more about the fundamental circuitry of the macula on Earth and to determine whether changes in connectivities occur under space flight conditions. Data captured directly from a transmission electron microscope via a video camera are sent to a graphics workstation. There, the digitized micrographs are mosaicked into sections and contours are traced, registered and displayed by semiautomated methods. Current reconstructions are of type II cells from the medial part of rat maculas collected in-flight on the Space Life Sciences-2 mission, 4.5 hrs post-flight, and from a ground control. Results show that typical type II cells receive processes from tip to six nearby calyces or afferents. Nearly all processes are elongated and have bouton-like enlargements; some have numerous vesicles. Multiple (2 to 4) processes from a single calyx to a type II cell are common, and approximately 1/3 of the processes innervale 2 or 3 type II cells or a neighboring cluster. From 2% to 6% of the cells resemble type I cells morphologically but have demi-calyces. Thus far, increments in synaptic number in type II cells of flight rats are prominent along processes that supply two hair cells. It is clear that reconstruction methods provide insights into details of macular circuitry not obtainable by other techniques. The results demonstrate a morphological basis for interactions between adjacent receptive fields through feed back-feed forward connections, and for dynamic alterations in receptive field range and activity during preprocessing of linear acceleratory information by the maculas. The reconstruction method we have developed will find further applications in the study of the details of neuronal architecture of more complex systems, to seek out shared organizational properties or neuronal networks and to understand better localization of synaptic changes in altered environments.

Ross, Muriel Dorothy↗

Bayesian prior construction for uncertainty quantification in first-principles statistical mechanics

First-principles statistical mechanics enables the prediction of thermodynamic and kinetic properties of materials, but is computationally expensive. Many approaches require surrogate models to calculate energies within Monte Carlo or molecular dynamics simulations. Inexpensive surrogates such as cluster expansions enable otherwise intractable calculations by interpolating data from higher accuracy methods, such as Density Functional Theory (DFT). Surrogate models introduce uncertainty into downstream calculations, in addition to any uncertainty inherent to DFT calculations. Bayesian frameworks address this by quantifying uncertainty and incorporating expert knowledge through priors. However, constructing effective priors remains challenging. This work introduces and describes practical strategies for building Bayesian cluster expansions, focusing on basis truncation, hyperparameter selection, and ground state replication. We analyze multiple basis truncation schemes, compare cross-validation to the evidence-approximation for hyperparameter optimization, and provide methods to find and enforce ground-state-preserving models through priors. Additionally, we compare the uncertainties between different approximations to DFT (LDA, PBE, SCAN) against the uncertainty introduced with the use of cluster expansion surrogate models. These approaches are demonstrated on the BCC Li x Mg 1-x and Li x Al 1-x alloys, which are both of interest for solid-state Li batteries. Our results provide guidelines for constructing and utilizing Bayesian cluster expansions, thereby improving the transparency of materials modeling. Furthermore, the approaches and insights developed in this work can be transferred to a wide range of cluster expansion surrogate models, including the atomic cluster expansion and related machine-learned interatomic potential architectures.

Alloy theory↗

Multiscale modeling of fission gas behavior in U 3 Si 2 under LWR conditions

In this work, we present a model of fission gas behavior in U 3 Si 2 under light water reactor (LWR) conditions for application in engineering fuel performance codes. The model includes components for intra-granular and inter-granular behavior of fission gases. The intra-granular component is based on cluster dynamics and computes the evolution of intra-granular fission gas bubbles and swelling coupled to gas diffusion to grain boundaries. The inter-granular component describes the evolution of grain-boundary fission gas bubbles coupled to fission gas release. Given the lack of experimental data for U 3 Si 2 under LWR conditions, the model is informed with parameters calculated via atomistic simulations. In particular, we derive fission gas diffusivities through density functional theory calculations, and the re-solution rate of fission gas atoms from intra-granular bubbles through binary collision approximation calculations. Further, the developed model is applied to the simulation of an experiment for U 3 Si 2 irradiated under LWR conditions available from the literature. Results point out a credible representation of fission gas swelling and release in U 3 Si 2 . Finally, we perform a sensitivity analysis for the various model parameters. Based on the sensitivity analysis, indications are derived that can help in addressing future research on the characterization of the physical parameters relative to fission gas behavior in U 3 Si 2 . The developed model is intended to provide a suitable infrastructure for the engineering scale calculation of fission gas behavior in U 3 Si 2 that exploits a multiscale approach to fill the experimental data gap and can be progressively improved as new lower-length scale calculations and validation data become available.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Core spectroscopy of oxazole

We have measured, analyzed and simulated the ground state valence photoelectron (PES), X-ray absorption (XAS), X-ray photoelectron (XPS) as well as normal and resonant Auger-Meitner electron (AES) spectra of oxazole at the carbon, oxygen and nitrogen K-edge in order to understand its electronic structure. Experimental data is compared to theoretical calculations performed at the coupled cluster, restricted active space perturbation theory to second order and time-dependent density functional levels of theory. We demonstrate that both N and O K-edge XAS are sensitive to the amount of dynamical electron correlation included in the theoretical description, and that for a complete description of XPS, additional orbital correlation and orbital relaxation effects need to be considered. The normal AES are dominated by a singlet excitation channel and well described by theory. Furthermore, the resonant AES, however, are more complicated. While the participator decay channels, dominating at higher kinetic energies, are well described by coupled cluster theory, spectator channels can only be described satisfactorily using a method that combines restricted active space perturbation theory to second order for the bound part and a one-center approximation for the continuum.

74 ATOMIC AND MOLECULAR PHYSICS↗

Fock-Space Schrieffer–Wolff Transformation: Classically-Assisted Rank-Reduced Quantum Phase Estimation Algorithm

We present an extension of many-body downfolding methods to reduce the resources required in the quantum phase estimation (QPE) algorithm. In this paper, we focus on the Schrieffer–Wolff (SW) transformation of the electronic Hamiltonians for molecular systems that provides significant simplifications of quantum circuits for simulations of quantum dynamics. We demonstrate that by employing Fock-space variants of the SW transformation (or rank-reducing similarity transformations (RRST)) one can significantly increase the locality of the qubit-mapped similarity-transformed Hamiltonians. The practical utilization of the SW-RRST formalism is associated with a series of approximations discussed in the manuscript. In particular, amplitudes that define RRST can be evaluated using conventional computers and then encoded on quantum computers. The SW-RRST QPE quantum algorithms can also be viewed as an extension of the standard state-specific coupled-cluster downfolding methods to provide a robust alternative to the traditional QPE algorithms to identify the ground and excited states for systems with various numbers of electrons using the same Fock-space representations of the downfolded Hamiltonian. The RRST formalism serves as a design principle for developing new classes of approximate schemes that reduce the complexity of quantum circuits.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

New ISTP Solar Max: A Multi-Spacecraft Study of the Flow of Ionospheric Plasma

The unique instrumentation on the Polar satellite combined with the simultaneous measurement of different parts of the magnetosphere with multiple satellites make possible the study of magnetospheric processes in a special way. In particular, the study of the ionospheric supply of plasma to the magnetosphere can by accomplished to give important results on the plasmas which drive the dynamics of the magnetosphere. This study concentrated on the period of September to December, 2001 in which the Polar orbit had precessed to the point that the line of apsides was near the equatorial plane. This unique orbital configuration enabled the TIDE instrument to measure outflowing ions across the polar cap and then transit the magnetotail lobes and observe the dramatic change in plasma characteristics as the satellite entered the plasma sheet. Contact was made with investigators on the Cluster and Geotail satellite missions and corresponding time frames were studied in the data. There were two approximate conjunctions between Polar and Geotail and data were compared to look for features which might be related. The higher energy concentration of the Geotail instrument made direct comparisons with TIDE difficult, and the Cluster measurements did not surface any cases that corresponded closely in space and time. There were, however, many interesting aspects of the Polar orbits which permitted the observation of the changing ionospheric outflowing plasma characteristics. As in earlier measurements, the ionospheric plasma could be seen flowing up the magnetic field lines out of the northern and southern polar caps. Its energy suggested a polar wind origin energized by the centrifugal acceleration of flow through the polar cusp. The roughly 10eV ions then moved out into the lobes of the magnetotail where they could be seen flowing toward the plasma sheet in both the northern and southern magnetotail lobes. There was also a double field-aligned region of warm ions observed just outside the plasmasphere, stretching toward the auroral zone and inner plasma sheet boundary. Upon entering the plasma sheet, the plasma energy jumped from 10 s of eV to greater than 1 keV. The single field aligned flows transitioned to highly variable spatially choppy energized ion distributions with a variety of pitch angle configurations. This pattern was quite repeatable in all of the Polar orbits that were examined and are compatible with the source of ions being the polar wind which is then energized to 10 s of eV by the centrifugal acceleration. These modestly energized polar wind ions are then carried to the magnetotail where they are substantially energized by the curvature drift-induced movement across the cross-tail potential of the magnetotail. This latter drift energizes the ions to the energies typically found in the plasma sheet. Subsequent drift and energization can cause the ions to become part of the ring current. The results of this study were presented at the Spring AGU meeting in 2002 and the GEM meeting in June 2003. They are the foundation for a paper that has been submitted by Matthew Huddleston to the Journal of Geophysical Research in December 2003. This work was part of the thesis that Matthew completed in finishing his Ph.D. in Physics at Vanderbilt University.

Chappell, Charles R.↗

Radial Profiles of the Binary Fraction in Elliptical Galaxies

The radial profile of the binary fraction may vary with environment and is of significant importance for studying the formation mechanisms of binary stars and their dynamical evolution within globular clusters and galaxies. However, existing studies remain limited to the Milky Way and its neighboring galaxies. Leveraging the method proposed by Zhang et al. for estimating the variation in the binary fraction from integrated spectral features, we analyze a sample of 513 elliptical galaxies drawn from the Mapping Nearby Galaxies at Apache Point Observatory survey to measure their radial binary fraction profiles. Our results show that after accounting for the effect induced by radial variations in the stellar population (SP), the median SP-subtracted binary fraction, $r^{\textrm{med}}_{\textrm{b,sub}}$, becomes approximately flat. For nearly all elliptical galaxies in our sample, the variation in the binary fraction relative to the galaxy center at 1R e is less than 5%. No clear correlation is found between the ​​​​​gradient of the binary fraction and the gradients of the SP properties. Moreover, we also compare differences between ultraviolet (UV) upturn and non-UV upturn galaxies. The overall binary fraction profiles and the SP properties of the non-UV upturn galaxies in our sample are comparable to those of the UV upturn galaxies. This similarity may arise from the presence of residual star formation in the non-UV upturn systems.

Li, Xiejin [Chinese Academy of Sciences; Universit↗

New Worlds / New Horizons Science with an X-ray Astrophysics Probe

In 2013 NASA commenced a design study for an X-ray Astrophysics Probe to address the X-ray science goals and program prioritizations of the Decadal Survey New World New Horizons (NWNH) with a cost cap of approximately $1B. Both the NWNH report and 2011 NASA X-ray mission concept study found that high-resolution X-ray spectroscopy performed with an X-ray microcalorimeter would enable the most highly rated NWNH X-ray science. Here we highlight some potential science topics, namely: 1) a direct, strong-field test of General Relativity via the study of accretion onto black holes through relativistic broadened Fe lines and their reverberation in response to changing hard X-ray continuum, 2) understanding the evolution of galaxies and clusters by mapping temperatures, abundances and dynamics in hot gas, 3) revealing the physics of accretion onto stellar-mass black holes from companion stars and the equation of state of neutron stars through timing studies and time-resolved spectroscopy of X-ray binaries and 4) feedback from AGN and star formation shown in galaxy-scale winds and jets. In addition to these high-priority goals, an X-ray astrophysics probe would be a general-purpose observatory that will result in invaluable data for other NWNH topics such as stellar astrophysics, protostars and their impact on protoplanetary systems, X-ray spectroscopy of transient phenomena such as high-z gamma-ray bursts and tidal capture of stars by massive black holes, and searches for dark matter decay.

Smith, Randall K.↗

Neural Network Solver for Small Quantum Clusters

Machine learning approaches have recently been applied to the study of various problems in physics. Most of these studies are focused on interpreting the data generated by conventional numerical methods or the data on an existing experimental database. An interesting question is whether it is possible to use a machine learning approach, in particular a neural network, for solving the many-body problem. In this paper, we present a neural network solver for the single impurity Anderson model, the paradigm of an interacting quantum problem in small clusters. We demonstrate that the neural-network-based solver provides quantitative accurate results for the spectral function as compared to the exact diagonalization method. This opens the possibility of utilizing the neural network approach as an impurity solver for other many-body numerical approaches, such as the dynamical mean field theory.

36 MATERIALS SCIENCE↗