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DOE OSTI2025

Lost and Found: Rediscovering Microbiome-Associated Phenotypes that Reshape Agricultural Sustainability

Overview Code and data repository for NIL Manuscript. Documentation includes sequence processing examples and data analysis. Supplemental sequence processing and R statistical analysis for publication, which compares the microbiome of teosinte-B73 Near Isogenic Lines. Sample Data Amplicon sequence data for 16S rRNA genes, the fungal ITS2 region, and nitrogen-cycling functional genes are available through the NCBI Sequence Read Archive (SRA) under accession number PRJNA1042643(https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1042643). Raw metabolomic data are available on Metabolomics Workbench, Project ID: PR002654. This study is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org where it has been assigned Study ID ST004211. The data can be accessed directly via its Project DOI: http://dx.doi.org/10.21228/M8KV8T.

Near Isogeneic Lines↗

DOE OSTI2024

Simulating cosmological evolution by quantum quench of an atomic Bose-Einstein condensate

In cosmological evolution, it is the homogeneous scalar field (inflaton) that drives the universe to expand isotropically and to generate standard model particles. However, to simulate cosmology, atomic gas research has focused on the dynamics of Bose-Einstein condensates (BEC) with continuously applied forces. In this paper we argue that a complementary approach needs also to be pursued; we thus consider the analog BEC experiments in a nondriven and naturally closed atomic system. We implement this using a BEC in an optical lattice which, after a quench, freely transitions from an unstable to a stable state. Furthermore, this dynamical evolution displays the counterpart “preheating,” “reheating,” and “thermalization” phases of cosmology. Importantly, our studies of these analog processes yield tractable analytic models. Additionally, of great utility to the cold atom community, such understanding elucidates the dynamics of nonadiabatic condensate preparation. Indeed, the dynamical processes discussed here are generic and in future cold atom reequilibration experiments it will be important to observe both the preheating stage, corresponding to a fragmented condensate, and the reheating stage, corresponding to a particle cloud.

74 ATOMIC AND MOLECULAR PHYSICS↗

DOE OSTI2020

Nanoscale Spatial Distribution of Supported Nanoparticles Controls Activity and Stability in Powder Catalysts for CO Oxidation and Photocatalytic H 2 Evolution

Here we discuss, supported metal nanoparticles are essential components of high-performing catalysts, and their structures are intensely researched. In comparison, nanoparticle spatial distribution in powder catalysts is conventionally not quantified, and the influence of this collective property on catalyst performance remains poorly investigated. Here, we demonstrate a general colloidal self-assembly method to control uniformity of nanoparticle spatial distribution on common industrial powder supports. We quantify distributions on the nanoscale using image statistics and show that the type of nanospatial distribution determines not only the stability, but also the activity of heterogeneous catalysts. Widely investigated systems (Au–TiO 2 for CO oxidation thermocatalysis and Pd–TiO 2 for H 2 evolution photocatalysis) were used to showcase the universal importance of nanoparticle spatial organization. Spatially and temporally resolved microkinetic modeling revealed that nonuniformly distributed Au nanoparticles suffer from local depletion of surface oxygen, and therefore lower CO oxidation activity, as compared to uniformly distributed nanoparticles. Nanoparticle spatial distribution also determines the stability of Pd–TiO 2 photocatalysts, because nonuniformly distributed nanoparticles sinter while uniformly distributed nanoparticles do not. This work introduces new tools to evaluate and understand catalyst collective (ensemble) properties in powder catalysts, which thereby pave the way to more active and stable heterogeneous catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

A convergence metric for counting statistics in time-resolved small angle neutron scattering

Here, this work introduces a model-independent, dimensionless metric for predicting optimal measurement duration in time-resolved small-angle neutron scattering using early-time data. Built on a Gaussian process regression framework, the method reconstructs scattering profiles with quantified uncertainty, even from sparse or noisy measurements. Demonstrated on the EQ-SANS instrument at the Spallation Neutron Source, the approach generalizes to general SANS instruments with a two-dimensional detector. A key result is the discovery of a dimensionless convergence metric revealing a universal power-law scaling in profile evolution across soft matter systems. When time is normalized by a system-specific characteristic time t*, the variation in inferred profiles collapses onto a single curve with an exponent between −2 and −1. This trend emerges within the first ten time steps, enabling early prediction of measurement sufficiency. The method supports real-time experimental optimization and is especially valuable for maximizing efficiency in low-flux environments such as compact accelerator-based neutron sources.

Tung, Chi-Huan [Oak Ridge National Laboratory (ORN↗

DOE OSTI2022

Experimental validation of universal plasma blob formation mechanism

Anomalous plasma transport in the boundary region of a tokamak plasma is commonly associated with the formation and evolution of coherent density structures known as blobs. Recently, a theory for a universal mechanism of plasma blob formation has been put forward. It is based on a breaking process of a radially elongated streamer due to poloidal and radial velocity shears. The theory is well supported by two-dimensional and three-dimensional numerical simulation results but lacks experimental validation. Here, we report the first ever experimental validation of this universal criterion by testing it against NSTX data on blobs obtained using the gas-puff imaging diagnostic. It is found that the criterion is widely satisfied in most L-mode discharges and may explain the significantly larger number of blob events. We also validate the theoretical criterion against ADITYA Langmuir probe data taken in the scrape-off layer region.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Redox-Induced Microstructure and Phase Dynamics in Nickel: Insights from In Situ Synchrotron X-ray Diffraction

Using in situ synchrotron X-ray diffraction, we interrogate the microstructural and phase evolution of polycrystalline nickel (Ni) during redox cycling in O 2 , H 2 , and H 2 O environments. Oxidation in O 2 promotes strong (111) texturing in both the NiO overlayer and the underlying Ni substrate. However, this crystallographic alignment is lost following reduction in H 2 and subsequent reoxidation, demonstrating irreversible microstructural changes. H 2 exposure leads to proton dissolution into the Ni lattice, triggering a localized phase transition from face-centered cubic (FCC) to hexagonal close-packed (HCP) Ni in hydrogen-saturated regions. In H 2 O-containing atmospheres, dissociative H 2 O adsorption produces protons that permeate the NiO layer, forming γ-NiOOH within the NiO lattice and HCP Ni beneath the NiO overlayer as protons accumulate. Kinetic analysis via the Johnson-Mehl-Avrami–Kolmogorov model uncovers distinct growth mechanisms: preoxidized Ni surfaces follow one-dimensional (1D) kinetics for NiO, γ-NiOOH, and HCP growth, whereas pristine Ni exhibits three-dimensional (3D) kinetics due to island-like nucleation and growth of NiO. Furthermore, these results highlight the critical interplay between H 2 O dissociation, hydrogen permeation, and redox-driven phase transformations, with practical implications in engineering nickel-based catalysts and hydrogen storage systems through controlled microstructural and phase evolution.

36 MATERIALS SCIENCE↗

DOE OSTI2026

Luminosity Function of Quasars at 1.0 < z < 3.5 from SDSS and DESI

We present a study of the evolution of type 1 quasars at 1.0 < z < 3.5, covering the peak epoch of quasar activity. The quasar evolution has been extensively explored by a variety of previous works and the derived quasar luminosity functions (QLFs) are not very consistent with each other, presumably due to the complexities introduced by different quasar selection techniques and associated completeness corrections. We use a new strategy to construct QLFs based on a library of all known quasars. We focus on a wide region of ∼1700 deg 2 and a deep field of ∼265 deg 2 that have rich spectroscopic data primarily from the Sloan Digital Sky Survey and DESI. We then apply traditional color cuts in the rest-frame UV–optical to select quasar candidates and use the quasar library to identify them. Our final sample consists of 62,426 quasars at 1.0 < z < 3.5, with a high completeness (∼96%) and a high purity (∼93%) in the color selection. Simple color cuts can potentially minimize selection biases for the study of quasar evolution. We derive binned QLFs and characterize them using a double power-law model. Sample incompleteness and contamination are considered as part of the uncertainties in the calculation. Compared to previous results, our QLFs are slightly higher at the faint end, and also higher at the bright end at 2.5 < z < 3.5. The QLFs suggest that the quasar evolution at 1.0 < z < 2.5 can be well described by the pure luminosity evolution model, while at 2.5 < z < 3.5, it can be described by either the pure luminosity evolution or the pure density evolution model.

Luminosity function↗

DOE OSTI2025

Historical land management alters new soil carbon inputs by annual and perennial bioenergy crops

Bioenergy and bioproduct markets are expanding to meet demand for climate friendly goods and services. Perennial biomass crops are particularly well suited for this goal because of their high yields, low input requirements, and potential to increase soil carbon (C). However, it is unclear how much C is allocated into belowground pools by perennial bioenergy crops and whether the belowground benefits vary with nitrogen (N) fertilizer inputs. Using in situ 13C pulse-chase labeling, we tested whether the sterile perennial grass Miscanthus × giganteus ( miscanthus ) or annual maize transfers more photosynthetic C to belowground pools. The experiment took place at two sites in Central and Northwest (NW) Iowa with different management histories and two nitrogen (N) fertilizer rates (0 and 224 kg N ha-1 yr-1) to determine if the fate of plant-derived soil C depends on soil fertility and crop type (perennial or annual). Maize allocated a greater percentage of total new 13C to roots than miscanthus, but miscanthus had greater new 13C in total and belowground plant biomass. We found strong interactions between site and most soil measurements – including new 13C in mineral and particulate soil organic matter (SOM) pools –which appear to be driven by differences in historical fertilizer management. The NW Iowa site, with a history of manure inputs, had greater plant-available nutrients (phosphorus, potassium, and ammonium) in soils, and resulted in less 13C from miscanthus in SOM pools compared to maize (approximately 64% less in POM and 70% less in MAOM). In more nutrient-limited soils (Central site), miscanthus transferred 4.5 times more 13C than maize to the more stable mineral-associated SOM pool. Our results suggest that past management, including historical manure inputs that affect a site’s soil fertility, can influence the net C benefits of bioenergy crops.

Keiser, Ashley [Stockbridge School of Agriculture,↗

DOE OSTI2022

Exact general solutions for cosmological scalar field evolution in a background-dominated expansion

We derive exact general solutions (as opposed to attractor particular solutions) and corresponding first integrals for the evolution of a scalar field $\phi$ in a universe dominated by a background fluid with equation of state parameter wB. In addition to the previously examined linear [V($\phi$)=V 0 $\phi$] and quadratic [V($\phi$)=V 0 $\phi$ 2 ] potentials, we show that exact solutions exist for the power-law potential V($\phi$)=V 0 $\phi$ n with n=4(1+w B )/(1-w B )+2 and n=2(1+w B )/(1-w B ). These correspond to the potentials V($\phi$)=V 0 $\phi$ 6 and V($\phi$)=V 0 $\phi$ 2 for matter domination and V($\phi$)=V 0 $\phi$ 10 and V($\phi$)=V 0 $\phi$ 4 for radiation domination. The $\phi$ 6 and $\phi$ 10 potentials can yield either oscillatory or nonoscillatory evolution, and we use the first integrals to determine how the initial conditions map onto each form of evolution. The exponential potential yields an exact solution for a stiff/kination (w B =1) background. We use this exact solution to derive an analytic expression for the evolution of the equation of state parameter, $w_\phi$, for this case.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Local primordial non-Gaussian bias from time evolution

Primordial non-Gaussianity (PNG) is a signature of fundamental physics in the early Universe that is probed by cosmological observations. Here, it is well known that the local type of PNG generates a strong signal in the two-point function of large-scale structure tracers, such as galaxies. This signal, often termed “scale-dependent bias” is a generic feature of modulation of gravitational structure formation by a large-scale mode. It is less well appreciated that the coefficient controlling this signal, b ϕ , is closely connected to the time evolution of the tracer number density. This correspondence between time evolution and local PNG can be simply explained for a universal tracer whose mass function only depends on peak height and, more generally, for nonuniversal tracers in the separate universe picture, which we validate in simulations. We also describe how to recover the bias of tracers subject to a survey selection function and perform a simple demonstration on simulated galaxies. Since the local PNG amplitude in n-point statistics ($f$ NL ) is largely degenerate with the coefficient b ϕ , this proof of concept study demonstrates that Galaxy survey data can allow for more optimal and robust extraction of local PNG information from upcoming surveys.

Sullivan, James M. [University of California, Berk↗

DOE OSTI2024

Cosmic quenching and scaling laws for the evolution of supermassive black holes and host galaxies

ABSTRACT Observations suggest a co-evolution of supermassive black holes (SMBHs) and host galaxies. In this paper, we consider the mass and energy flow in a near-equilibrium bulge suffused by gases of varying temperatures. By assuming the rate of energy flow independent of the distance r from the bulge center and the local virial equilibrium for permeated gases on scale r, a key parameter $\varepsilon _b$ was identified that quantifies the mass and energy flow in gases and the efficiency of gas cooling (or the "specific" cooling rate per unit mass), and thus regulates the co-evolution of both SMBHs and hosts. With the help of Illustris simulations and observations, we determined the redshift variation $\varepsilon _b\propto (1+z)^{5/2}$. A higher $\varepsilon _b$ in the early Universe means a higher specific cooling rate that allows rapid evolution of SMBHs and hosts. This simple theory, characterized by a single parameter $\varepsilon _b$, provides the dominant mean cosmic evolution of SMBHs and hosts. All other transient phenomena may only contribute to the dispersion around this mean evolution. Based on this theory and relevant assumptions, scaling laws involving $\varepsilon _b$ were identified for the evolution of SMBHs and hosts. For host galaxies, the mass–size relation $M_b\propto \varepsilon _b^{2/3}r_b^{5/3}G^{-1}$, the dispersion–size relation $\sigma _b^2\propto (\varepsilon _b r_b)^{2/3}\propto (1+z)$, or the mass–dispersion relation $M_b\propto \varepsilon _b^{-1}G^{-1}\sigma _b^5$ were identified, where $r_b\propto (1+z)^{-1}$ is the bulge size. For SMBHs, three evolution phases were found involving an initial rapid growth stage with a rising luminosity $L_B\propto (\varepsilon _b M_{\rm BH})^{4/5}$, a transition stage with a declining $L_B\propto \varepsilon _b^2 M_{\rm BH} \propto (1+z)^5$, and a dormant stage with $L_B\propto (\varepsilon _b M_{\rm BH})^{4/3}$. Our results suggest a rapid initial super-Eddington growth in a short period with a new redshift-dependent luminosity limit $L_X\propto\varepsilon _b^{4/5}M_{\rm BH}^{4/5}G^{-1/5}c$, in contrast to the Eddington limit. Analytical solutions were formulated for the BH mass function $\Phi _{\rm BH}$, active galactic nucleus (AGN) mass function $\Phi _{\rm AGN}$, and duty cycle U that predict $\Phi _L\propto L^{-1/5}$ for the faint-end luminosity function, $\Phi _{\rm AGN}\propto M^{-1/5}$ for small-mass-end AGN mass function $\Phi _L$, and $U\propto M^{-1/5}$ at high redshift.

(galaxies:) quasars: supermassive black holes↗

DOE OSTI2023

Systematic Study of Projection Biases in Weak Lensing Analysis

The nature of Dark Energy is possibly one of the most fundamental questions in Physics today. Comprising 70% of the energy density of the Universe, and being responsible for the accelerated expansion of the Universe, this mysterious form of energy with negative pressure is challenging our current understanding of the fundamental laws of nature. Cosmological parameters like total relative matter Density Ωm, the normalization of power spectrum σ8 and their combination S8 = σ8 p Ωm/0.3 are used to quantify our understanding of the evolution of the large-scale structure in the Universe and shed light on the accelerated expansion, caused by the Dark Energy, that started about halfway through the life of the Universe. Sky surveys, like Dark Energy Survey (DES), utilize weak lensing analysis to use the observations of galaxies and their shapes and extract these cosmological parameters. By doing an exhaustive study and quantifying the projection biases in the weak lensing statistics, the research work presented in this dissertation aims to contribute to the precise measurements of the cosmological parameters Ωm, σ8, and S8. For the analysis, we used the standard cosmological model that includes dark energy as the cosmological constant. And, we used the data taken by the DES experiment, which is one of the most complete, deep, and wide field surveys of the sky today.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

The Completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: exploring the halo occupation distribution model for emission line galaxies

We study the modelling of the halo occupation distribution (HOD) for the eBOSS DR16 emission line galaxies (ELGs). Motivated by previous theoretical and observational studies, we consider different physical effects that can change how ELGs populate haloes. We explore the shape of the average HOD, the fraction of satellite galaxies, their probability distribution function (PDF), and their density and velocity profiles. Our baseline HOD shape was fitted to a semi-analytical model of galaxy formation and evolution, with a decaying occupation of central ELGs at high halo masses. We consider Poisson and sub/super-Poissonian PDFs for satellite assignment. We model both Navarro–Frenk–White and particle profiles for satellite positions, also allowing for decreased concentrations. We model velocities with the virial theorem and particle velocity distributions. Additionally, we introduce a velocity bias and a net infall velocity. We study how these choices impact the clustering statistics while keeping the number density and bias fixed to that from eBOSS ELGs. The projected correlation function, w p , captures most of the effects from the PDF and satellites profile. The quadrupole, ξ 2 , captures most of the effects coming from the velocity profile. We find that the impact of the mean HOD shape is subdominant relative to the rest of choices. Here, we fit the clustering of the eBOSS DR16 ELG data under different combinations of the above assumptions. The catalogues presented here have been analysed in companion papers, showing that eBOSS RSD+BAO measurements are insensitive to the details of galaxy physics considered here. These catalogues are made publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Universal time scalings of sensitivity in Markovian quantum metrology

Assuming Markovian time evolution of a quantum sensing system, we study the general characterization of the optimal sensitivity scalings with time, under most general quantum control protocols. We allow the estimated parameter to influence both the Hamiltonian as well as the dissipative part of the quantum master equation and focus on the asymptotic-time along with the short-time sensitivity scalings. We find that via simple algebraic conditions (in terms of the Hamiltonian, the jump operators as well as their parameter derivatives), one can characterize the four classes of metrological models that represent: quadratic-linear, quadratic-quadratic, linear-linear, and linear-quadratic time scalings. We also investigate the relevant time scales on which the transition between the two regimes appears. Additionally, we provide universal numerical methods to obtain quantitative bounds on sensitivity that are the tightest that exist in the literature. Simplicity and universality of our results make it suitable for diverse applications in quantum metrology.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

Progress on Cosmological Magnetic Fields

A variety of observations impose upper limits at the nano Gauss level on magnetic fields that are coherent on inter-galactic scales while blazar observations indicate a lower bound $\sim 10^{-16}$ Gauss. Such magnetic fields can play an important astrophysical role, for example at cosmic recombination and during structure formation, and also provide crucial information for particle physics in the early universe. Magnetic fields with significant energy density could have been produced at the electroweak phase transition. The evolution and survival of magnetic fields produced on sub-horizon scales in the early universe, however, depends on the magnetic helicity which is related to violation of symmetries in fundamental particle interactions. In conclusion, the generation of magnetic helicity requires new CP violating interactions that can be tested by accelerator experiments via decay channels of the Higgs particle.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

The SRG/eROSITA All-Sky Survey: Constraints on ultralight axion dark matter through galaxy cluster number counts

Ultralight axions are hypothetical scalar particles that influence the evolution of large-scale structures of the Universe. Depending on their mass, they can potentially be part of the dark matter component of the Universe as candidates commonly referred to as fuzzy dark matter. While strong constraints have been established for pure fuzzy dark matter models, the more general scenario where ultralight axions constitute only a fraction of the dark matter has been limited to only a few observational probes. In this work, we use the galaxy cluster number counts obtained from the first All-Sky Survey (eRASS1) of the SRG/eROSITA mission together with gravitational weak lensing data from the Dark Energy Survey, the Kilo-Degree Survey, and the Hyper Suprime-Cam to constrain the fraction of ultralight axions in the mass range 10 −32 eV to 10 −24 eV. We put upper bounds on the ultralight axion relic density Ω a in independent logarithmic axion mass bins by performing a full cosmological parameter inference. We find an exclusion region in the intermediate ultralight axion mass regime with the tightest bounds reported so far in the mass bins around m a = 10 −27 eV with Ω a < 0.0035 and m a = 10 −26 eV with Ω a < 0.0079; both are at a 95% confidence level. When combined with cosmic microwave background probes, these bounds are tightened to Ω a < 0.0030 in the m a = 10 −27 eV mass bin and Ω a < 0.0058 in the m a = 10 −26 eV mass bin, with both at a 95% confidence level. This is the first time that constraints on ultralight axions have been obtained using the growth of structure measured by galaxy cluster number counts. These results pave the way for large surveys, which can be utilized to obtain tight constraints on the mass and relic density of ultralight axions with better theoretical modeling of the abundance of halos.

cosmological parameters↗

DOE OSTI2021

The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: N-body mock challenge for the eBOSS emission line galaxy sample

ABSTRACT Cosmological growth can be measured in the redshift space clustering of galaxies targeted by spectroscopic surveys. Accurate prediction of clustering of galaxies will require understanding galaxy physics, which is a very hard and highly non-linear problem. Approximate models of redshift space distortion (RSD) take a perturbative approach to solve the evolution of dark matter and galaxies in the universe. In this paper, we focus on extended Baryon Oscillation Spectroscopic (eBOSS) emission line galaxies (ELGs) that live in intermediate mass haloes. We create a series of mock catalogues using haloes from the Multidark and outer rim dark matter only N-body simulations. Our mock catalogues include various effects inspired by baryonic physics such as assembly bias and the characteristics of satellite galaxies kinematics, dynamics, and statistics deviating from dark matter particles. We analyse these mocks using the TNS RSD model in Fourier space and the convolution Lagrangian perturbation theory (CLPT) in configuration space. We conclude that these two RSD models provide an unbiased measurement of RSD within the statistical error of our mocks. We obtain the conservative theoretical systematic uncertainty of $3.3{{\ \rm per\ cent}}$, $1.8{{\ \rm per\ cent}}$, and $1.5{{\ \rm per\ cent}}$ in fσ8, α∥, and α⊥, respectively, for the TNS and CLPT models. We note that the estimated theoretical systematic error is an order of magnitude smaller than the statistical error of the eBOSS ELG sample and hence are negligible for the purpose of the current eBOSS ELG analysis.

Alam, Shadab↗

DOE OSTI2022

Discovering Ca II absorption lines with a neural network

Quasar absorption line analysis is critical for studying gas and dust components and their physical and chemical properties as well as the evolution and formation of galaxies in the early universe. Calcium II (Ca II ) absorbers, which are one of the dustiest absorbers and are located at lower redshifts than most other absorbers, are especially valuable when studying physical processes and conditions in recent galaxies. However, the number of known quasar Ca II absorbers is relatively low due to the difficulty of detecting them with traditional methods. In this work, we developed an accurate and quick approach to search for Ca II absorption lines using deep learning. In our deep learning model, a convolutional neural network, tuned using simulated data, is used for the classification task. The simulated training data are generated by inserting artificial Ca II absorption lines into original quasar spectra from the Sloan Digital Sky Survey (SDSS), while an existing Ca II catalogue is adopted as the test set. The resulting model achieves an accuracy of 96 per cent on the real data in the test set. Our solution runs thousands of times faster than traditional methods, taking a fraction of a second to analyse thousands of quasars, while traditional methods may take days to weeks. The trained neural network is applied to quasar spectra from SDSS’s DR7 and DR12 and discovered 399 new quasar Ca II absorbers. In addition, we confirmed 409 known quasar Ca II absorbers identified previously by other research groups through traditional methods.

79 ASTRONOMY AND ASTROPHYSICS↗