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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Fluorescent resonance energy transfer -based biosensor for detecting conformational changes of Pin1

Highlights: • Pin1 contains two domains: WW domain and catalytic PPIase domain. • Interaction of both domains is required for Pin1 functions. • Molecular movement of Pin1 after it binds each substrate is still unclear. • FRET biosensor for detecting conformational changes of Pin1 was created. • This FRET biosensor is useful for Pin1-targeting drug screening. Pin1, a peptidyl prolyl cis/trans isomerase (PPIase), regulates the activity and stability of various phosphorylated proteins. Pin1 consists of a PPIase domain and WW domain, both of which are required for the function of Pin1. However, how the behavior of these domains changes upon binding to phosphorylated proteins has not been analyzed. We created a Fluorescent Resonance Energy Transfer (FRET)-based biosensor “CPinY”, which is composed of Pin1 flanked by CFP and YFP, and analyzed the interaction between Pin1 and c-Myc. Our results indicated that the dual phosphorylation of c-Myc at Thr58 and Ser62 is essential for tight interaction with Pin1. Additionally, this interaction caused a significant conformational change in Pin1. Our CPinY biosensor also detected a novel type of inhibitor of Pin1 function. We believe that his biosensor will be a novel drug screening technology targeting Pin1.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

One-way coupled simulation of FIV in a 7-pin wire-wrapped fuel pin bundle

A normal fuel geometry found in sodium cooled reactor designs is the hexagonal lattice of wire-wrapped fuel pins. The wire-wrappers, which replace the more common spacer grids, act as a spacer between the fuel pins, while simultaneously increasing the fluid mixing between subchannels. The induced transverse flow, while good for mixing, increases the force load experienced by the fuel pins, increasing the possibility of problematic flow induced vibrations. The primary source of vibrations is turbulent buffeting, so very small in amplitude, but capable of rupturing the fuel cladding by fretting. The vast majority of research on fretting has been for bare rods with spacer grids. There are several significant ways that wire-wrapped fuel pins differ from bare rods that may have significant impact on the vibrations present. The increased transverse flow and asymmetrical flow pattern may result in larger and imbalanced force loads on the pins. The helical bracing of each pin may result in unique vibration patterns, and gaps may form between pins affecting how they are braced. Simulation allows for the observation of the forces present, how the flow field affects these forces, and how the structure responds and can be repeated for multiple cases for relatively low cost. Here, simulation of the flow induced vibrations for a 7-pin wire-wrapped fuel pin bundle is carried out by coupling Nek5000, a spectral element LES/DNS solver with DIABLO, a finite element CSM solver. The small amplitude vibrations allow for the assumption that the structure motion has negligible effect on the fluid flow, permitting the much less computationally expensive one-direction coupling. In order to gather significant force history data for the 2.63 helical pitch structure, a scheme was developed to artificially create force history from the power spectrum density of the one-pitch CFD simulation forces. The vibrations could then be simulated in the structure multiple times varying the contact and gaps between various pins. This provides for the search of worst-case scenarios and informs about the types of fretting that might be present. The simulation geometry is based on an experiment for comparison. However, the viscosity of the simulation was increased by a factor of four to make the simulation computationally feasible. While validation is not possible, comparisons are still valuable.

42 ENGINEERING↗
DOE OSTI2016

Grid-to-rod flow-induced impact study for PWR fuel in reactor

The source for grid-to-rod fretting in a pressurized water nuclear reactor (PWR) is the dynamic contact impact from hydraulic flow-induced fuel assembly vibration. In order to support grid-to-rod fretting wear mitigation research, finite element analysis (FEA) was used to evaluate the hydraulic flow-induced impact intensity between the fuel rods and the spacer grids. Three-dimensional FEA models, with detailed geometries of the dimple and spring of the actual spacer grids along with fuel rods, were developed for flow impact simulation. The grid-to-rod dynamic impact simulation provided insights of the contact phenomena at grid-rod interface. Finally, it is an essential and effective way to evaluate contact forces and provide guidance for simulative bench fretting-impact tests.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2022

Complex pH-Dependent Interactions between Weak Polyelectrolyte Block Copolymer Micelles and Molecular Fluorophores

Amphiphilic block copolymers with weak polyelectrolyte blocks can assemble stimulus-responsive nanostructures and interfaces. Applications of these materials in drug delivery, biomimetics, and sensing largely rely on the well-understood swelling of polyelectrolyte chains upon deprotonation, often induced by changes in pH or ionic strength. This deprotonation can also tune interfacial interactions between the polyelectrolyte blocks and surrounding solution, an effect which is less studied than morphological swelling of polyelectrolytes but can be just as critical for intended function. Here, we investigate whether the pH-driven morphological response of polyelectrolyte-bearing nanostructures also affects the interactions of these nanostructures with molecules in solution, using micelles of a short-chain polybutadiene-block-poly(acrylic acid) (pBd–pAA) as a model system. Here we introduce a Förster resonance energy transfer (FRET) approach to probe interactions between micelles and fluorescent molecular solutes as a function of solution pH. As expected, the pAA corona of these pBd–pAA micelles increases in thickness monotonically as a function of pH. However, FRET efficiency, which provides a metric of the spatial proximity of fluorescently labeled micelles and freely diffusing fluorophores, exhibits complex nonmonotonic behavior as a function of pH, indicating that the average separation of micelles and acceptor fluorophores is not strictly correlated with micelle swelling. Dialysis experiments quantify the affinity of fluorophores for micelles as a function of pH, confirming that changes in FRET are driven almost entirely by the pH-dependent affinity of the pAA block for the investigated molecular fluorophores, not simply by a shape change of the pAA corona. This study provides key insights into the interfacial interactions between weak-polyelectrolyte-bearing nanostructures and molecular solutes, of importance for the development of their stimulus-responsive applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Long-Range Exciton Diffusion in Two-Dimensional Assemblies of Cesium Lead Bromide Perovskite Nanocrystals

Förster resonant energy transfer (FRET)-mediated exciton diffusion through artificial nanoscale building block assemblies could be used as an optoelectronic design element to transport energy. However, so far, nanocrystal (NC) systems supported only diffusion lengths of 30 nm, which are too small to be useful in devices. In this work, we demonstrate a FRET-mediated exciton diffusion length of 200 nm with 0.5 cm 2 /s diffusivity through an ordered, two-dimensional assembly of cesium lead bromide perovskite nanocrystals (CsPbBr 3 PNCs). Exciton diffusion was directly measured via steady-state and time-resolved photoluminescence (PL) microscopy, with physical modeling providing deeper insight into the transport process. This exceptionally efficient exciton transport is facilitated by PNCs' high PL quantum yield, large absorption cross section, and high polarizability, together with minimal energetic and geometric disorder of the assembly. This FRET-mediated exciton diffusion length matches perovskites' optical absorption depth, thus enabling the design of device architectures with improved performances and providing insight into the high conversion efficiencies of PNC-based optoelectronic devices.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2015

Förster resonant energy transfer from an inorganic quantum well to a molecular material: Unexplored aspects, losses, and implications to applications

A systematic investigation of Förster resonant energy transfer (FRET) is reported within a hybrid prototype structure based on nitride single quantum well (SQW) donors and light emitting polymer acceptors. Self-consistent Schrödinger-Poisson modeling and steady-state and time-resolved photoluminescence experiments were initially employed to investigate the influence of a wide structural parameter space on the emission quantum yield of the nitride component. The optimized SQW heterostructures were processed into hybrid structures with spin-casted overlayers of polyfluorenes. The influence of important unexplored aspects of the inorganic heterostructure such as SQW confinement, content, and doping on the dipole-dipole coupling was probed. Competing mechanisms to the FRET process associated with interfacial recombination and charge transfer have been studied and their implications to device applications exploiting FRET across heterointerfaces have been discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Luminescent GdVO{sub 4}:Sm{sup 3+} quantum dots enhance power conversion efficiency of bulk heterojunction polymer solar cells by Förster resonance energy transfer

In this work, we report enhanced power conversion efficiency (PCE) of bulk heterojunction polymer solar cells by Förster resonance energy transfer (FRET) from samarium-doped luminescent gadolinium orthovanadate (GdVO{sub 4}:Sm{sup 3+}) quantum dots (QDs) to polythieno[3,4-b]-thiophene-co-benzodithiophene (PTB7) polymer. The photoluminescence emission spectrum of GdVO{sub 4}:Sm{sup 3+} QDs overlaps with the absorption spectrum of PTB7, leading to FRET from GdVO{sub 4}:Sm{sup 3+} to PTB7, and significant enhancements in the charge-carrier density of excited and polaronic states of PTB7 are observed. This was confirmed by means of femtosecond transient absorption spectroscopy. The FRET from GdVO{sub 4}:Sm{sup 3+} QDs to PTB7 led to a remarkable increase in the power conversion efficiency (PCE) of PTB7:GdVO{sub 4}:Sm{sup 3+}:PC{sub 71}BM ([6,6]-phenyl-C{sub 71}-butyric acid methyl ester) polymer solar cells. The PCE in optimized ternary blend PTB7:GdVO{sub 4}:Sm{sup 3+}:PC{sub 71}BM (1:0.1:1.5) is increased to 8.8% from 7.2% in PTB7:PC{sub 71}BM. This work demonstrates the potential of rare-earth based luminescent QDs in enhancing the PCE of polymer solar cells.

36 MATERIALS SCIENCE↗
DOE OSTI2019

The combined force field-sampling problem in simulations of disordered amyloid-β peptides

Molecular dynamics simulations of intrinsically disordered proteins (IDPs) can provide high resolution structural ensembles if the force field is accurate enough and if the simulation sufficiently samples the conformational space of the IDP with the correct weighting of sub-populations. Here, we investigate the combined force field–sampling problem by testing a standard force field as well as newer fixed charge force fields, the latter specifically motivated for better description of unfolded states and IDPs, and comparing them with a standard temperature replica exchange (TREx) protocol and a non-equilibrium Temperature Cool Walking (TCW) sampling algorithm. The force field and sampling combinations are used to characterize the structural ensembles of the amyloid-beta peptides Aβ42 and Aβ43, which both should be random coils as shown recently by experimental nuclear magnetic resonance (NMR) and 2D Förster resonance energy transfer (FRET) experiments. The results illustrate the key importance of the sampling algorithm: while the standard force field using TREx is in poor agreement with the NMR J-coupling and nuclear Overhauser effect and 2D FRET data, when using the TCW method, the standard and optimized protein-water force field combinations are in very good agreement with the same experimental data since the TCW sampling method produces qualitatively different ensembles than TREx. Lastly, we also discuss the relative merit of the 2D FRET data when validating structural ensembles using the different force fields and sampling protocols investigated in this work for small IDPs such as the Aβ42 and Aβ43 peptides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Membrane potential sensing: Material design and method development for single particle optical electrophysiology

We review the development of “single” nanoparticle-based inorganic and organic voltage sensors, which can eventually become a viable tool for “non-genetic optogenetics.” The voltage sensing is accomplished with optical imaging at the fast temporal response and high spatial resolutions in a large field of view. Inorganic voltage nanosensors utilize the Quantum Confined Stark Effect (QCSE) to sense local electric fields. Engineered nanoparticles achieve substantial single-particle voltage sensitivity (~2% Δλ spectral Stark shift up to ~30% ΔF/F per 160 mV) at room temperature due to enhanced charge separation. A dedicated home-built fluorescence microscope records spectrally resolved images to measure the QCSE induced spectral shift at the single-particle level. Biomaterial based surface ligands are designed and developed based on theoretical simulations. The hybrid nanobiomaterials satisfy anisotropic facet-selective coating, enabling effective compartmentalization beyond non-specific staining. Self-spiking- and patched-HEK293 cells and cortical neurons, when stained with hybrid nanobiomaterials, show clear photoluminescence intensity changes in response to membrane potential (MP) changes. Organic voltage nanosensors based on polystyrene beads and nanodisk technology utilize Fluorescence (Förster) Resonance Energy Transfer (FRET) to sense local electric fields. Voltage sensing FRET pairs achieve voltage sensitivity up to ~35% ΔF/F per 120 mV in cultures. Non-invasive MP recording from individual targeted sites (synapses and spines) with nanodisks has been realized. However, both of these QCSE- and FRET-based voltage nanosensors yet need to reach the milestone of recording individual action potentials from individual targeted sites.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1975

Alaskan thermokarst terrain and possible Martian analog

A first-order analog to Martian fretted terrain has been recognized on enhanced, ERTS-1 (Earth Resources Technology Satellite) imagery of Alaskan Arctic thermokarst terrain. The Alaskan analog displays flat-floored valleys and intervalley uplands characteristic of fretted terrain. The thermokarst terrain has formed in a manner similar to one of the processes postulated for the development of the Martian fretted terrain.

Gatto, L. W.↗
NASA NTRS1989

Transitional morphology in west Deuteronilus Mensae, Mars - Implications for modification of the lowland/upland boundary

The present examination of the west Deuteronilus Mensae region of Mars notes the changes in fretted terrain across the gradational boundary from uplands to lowlands to include a reduction of canyon wall slopes and depths, so that the fretted terrain north of the gradational boundary appears matted, but not obscured. The two process-classes that may account for the lateral overlap are the erosion of stratified upland terrain, and the deposition of plains materials onto the sloping upland margin and fretted terrain. A variety of plains-emplacement mechanisms is considered.

Parker, Timothy J.↗
NASA NTRS1994

Thermal studies of Martian channels and valleys using Termoskan data

The Termoskan instrument on board the Phobos '88 spacecraft acquired the highest spatial resolution thermal infrared emission data ever obtained for Mars. Included in the thermal images 2 km/pixel, midday observations of several major channel and valley systems including significant portions of Shalbatana, Ravi, Al-Qahira, and Ma'adim Valles, the channel connecting Valles Marineris with Hydraotes Chaos, and channel material in Eos Chasma. Termoskan also observed small portions of the southern beginnings of Simud, Tiu, and Ares Valles and some channel material in Gangis Chasma. Simultaneous broadband visible reflectance data were obtained for all but Ma'adim Vallis. We find that most of the channels and valleys have higher thermal inertias than their surroundings, consistent with previous thermal studies. We show for the first time that the thermal inertia boundaries closely match flat channel floor boundaries. Also, buttes within channels have inertias similiar to the plains surrounding the channels, suggesting the buttes are remnants of a contiguous plains surface. Lower bounds on typical channel thermal inertias range from 8.4 to 12.5 (10(exp -3) cal cm(exp -2) s(exp -1/2)/K) (352 to 523 in SI units of J m(exp -2) s(exp -1/2)/K). Lower bounds on inertia differences with the surrounding heavily cratered plains range from 1.1 to 3.5 (46 to 147 SI). Atmospheric and geometric effects are not sufficient to cause the observed channel inertia enhancements. We favor nonaeolian explanations of the overall channel inertia enhancements based primarily upon the channel floors' thermal homogeneity and the strong correlation of thermal boundaries with floor boundaries. However, localized, dark regions within some channels are likely aeolian in nature as reported previously. Most channels with increased inertias have fretted morphologies such as flat floors with steep walls. Eastern Ravi and southern Ares Valles, the only major channel sections observed that have obvious catastrophic flood bedforms, do not have enhanced inertias. Therefore, we favor fretting processes over catastrophic flooding for explaining the inertia enhancements. We postulate that the inertia enhancements were caused either by the original fretting process or by a process involving the bonding of fines due to an increased availability of water, either initially or secondarily.

Betts, Bruce H.↗
DOE OSTI2016

Meeting the industry challenge to achieve leak free performance

Deployment of highly reliability fuel products is one of AREVA NP's overarching philosophies. Any fuel defect brings appreciable burden to utility and fuel vendors alike. AREVA NP's achievements in leaker free performance are direct results of rigorous investigations and development of innovative products and solutions to address longstanding industry fuel reliability concerns. An illustrative example of this commitment can be found in the AREVA NP's BWR fuel product line. PCI had been a leading failure mechanism in BWR fuel supplied in the United States. In response, AREVA NP implemented improved pellet designs, tighter manufacturing standards, and industry-leading power maneuvering methodologies that have eliminated PCI failures altogether. Likewise, failures resulting from small debris forms in the primary system have been a leading failure mechanism in the BWR fuel. The implementation of advanced debris filters such as the Improved FUELGUARD and 3. Generation FUELGUARD have virtually eliminated debris-related failures. AREVA NP's commitment to fuel reliability is not limited to the BWR fuel products. Grid-to-Rod Fretting (GTRF) has long been a dominant PWR failure mechanism in the industry and results from challenging cross-flows within specific reactor designs that excite and ultimately cause the fuel rod to fret against the spacer contacts to the point of failure. In 2010 alone, 32 PWR fuel rods were discharged in the United States region that had failed due to fretting-related conditions. To eliminate this longstanding industry challenge, a suite of fuel products developed around the HTP (High Thermal Performance) spacer platform were implemented. The HTP grid design, with its multiple line contacts, serves to cradle the fuel rod and dampen vibrations in the presence of challenging flow conditions. When coupled with the Alloy 718 HMP (High Mechanical Performance) lower grid, HTP fuel has never experienced a GTRF failure. The AREVA NP's commitment to fuel reliability is successful: in 2010 a total of 41 failed fuel rods were discharged from reactors in the United States whereas in 2015 no failed fuel rods were discharged out of the approximately 1.3 million fuel rods in operation.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2016

Nitride Fuel Potential for Power Uprates

This work presents the methodology and current results for design analysis of grid supported pressurized water reactor cores using uranium nitride (UN) fuel in square arrays. Uranium nitride has a higher theoretical density and higher thermal conductivity than uranium oxide, allowing for lower fuel temperatures, longer cycle length and higher power densities with similar enrichment. In order to avoid the UN and high temperature water reaction, silicon carbide cladding has been proposed in place of Zircaloy cladding. The analysis aims at finding the maximum thermal power over a range of bundle geometries (rod diameter and pitch). The same methodology is applied to the design of UO{sub 2} oxide fueled cores to provide a fair comparison of the achievable power rating between the two fuel types. Steady-state limits are considered, including fuel bundle pressure drop, minimum departure from nucleate boiling ratio (MDNBR), fuel temperature, fuel rod vibrations and pin fretting and sliding wear. Transients such as loss of flow and overpower accident will be considered. A steady state analysis was undertaken to determine the maximum achievable power that can be sustained by square array fuel assemblies loaded with nitride and oxide fuels with same or better safety performances as the reference design. Steady-state design limits were applied including MDNBR, fuel bundle pressure drop, fuel temperature, cumulative sliding and fretting wear. The major conclusions of this study are as follows: 1) It is possible to achieve significant power increase for UN and UO{sub 2} compared to the reference core power output of 3400 MWth with smaller but more numerous rods and higher pitch over diameter ratios. A power uprate of 25% can be reached according to the VIPRE-MATLAB interface for full core analysis with the same number of spacer grids, and 32% according to the new MATLAB script for single hot channel analysis, with five more spacer grids. For this latter core, a higher enrichment would be required. 2) The nitride fuel temperature constraint from dissociation doesn't influence steady state performances as other design constraints such as MDNBR and pressure loss are more restrictive. The oxide fuel temperature constraint from fission gas release is reached in part of the study domain, but not in the region that allows for possible uprates. 3) As a result, the thermal hydraulic performance of UN and UO{sub 2} are similar. Differences in possible power uprates will arise from fretting and sliding wear. Wear depends of the time spent by the fuel in the core, which depends on burnup and heavy metal inventory. UN being denser, it can allow for power uprates or increased cycle length. There is a trade off between power uprates and cycle length with regards to fuel pin wear. Reducing fuel pin wear by reducing cycle length can allow for higher thermal power. This affects the plants' economics as well. This work will be completed by a transient analysis using CASMO4E, SIMULATE3 and SIMULATE3k to model the neutronics of a nitride fueled core. The transient performances will be used to determine the maximum power uprates while performing as well or better during transients as the reference design. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2021

Single molecule characterization of anomalous transport in a thin, anisotropic film

Here, the diffusion of small, charged molecules incorporated in an anisotropic polyelectrolyte multilayers (PEMs) was tracked in three dimensions by combining single-molecule fluorescence localization (to characterize lateral diffusion) with Förster resonance energy transfer (FRET) between diffusing molecules and the supporting surface (to measure diffusion in the surface-normal direction). Analysis of the surface-normal diffusion required model-based statistical analysis to account for the inherently noisy FRET signal. Combining these distinct single-molecule methods, which are inherently sensitive to different length scales, permitted simultaneous characterization of severely anisotropic diffusion, which was more than three orders of magnitude slower in the surface-normal direction. We hypothesize that the anomalously slow surface-normal diffusion was related to the periodic distribution of charge in the PEM, which created electrostatic barriers. The motion was strongly subdiffusive, with anomalous temporal scaling exponents in lateral and normal directions, suggesting a connection to the transient, random fractal conformation of polymer chains in the film’s matrix.

36 MATERIALS SCIENCE↗
DOE OSTI2015

Electrical Control of near-Field Energy Transfer between Quantum Dots and Two-Dimensional Semiconductors

Here, we investigate near-field energy transfer between chemically synthesized quantum dots (QDs) and two-dimensional semiconductors. We also fabricate devices in which electrostatically gated semiconducting monolayer molybdenum disulfide (MoS 2 ) is placed atop a homogeneous self-assembled layer of core-shell CdSSe QDs. We demonstrate efficient nonradiative Forster resonant energy transfer (FRET) from QDs into MoS 2 and prove that modest gate-induced variation in the excitonic absorption of MoS 2 leads to large (-500%) changes in the FRET rate. In turn, this allows for up to similar to 75% electrical modulation of QD photoluminescence intensity. The hybrid QD/MoS 2 devices operate within a small voltage range, allow for continuous modification of the QD photoluminescence intensity, and can be used for selective tuning of QDs emitting in the visible-IR range.

36 MATERIALS SCIENCE↗
DOE OSTI2020

A Quantum Dot Nanobiosensor for Rapid Detection of Botulinum Neurotoxin Serotype E

Botulinum neurotoxins (BoNTs) are potent toxins produced by Clostridium bacteria that are responsible for the illness botulism and are listed as bioterrorism agents. BoNT serotype E (BoNT/E) is one of four BoNT serotypes that cause human botulism and is the second most frequent cause of foodborne botulism. Rapid detection and discrimination of BoNT serotypes implicated in human disease are critical for ensuring timely treatment of patients and identifying sources of toxins, but there have been few reported detection methods for BoNT/E and even fewer methods usable for BoNT serotyping. We report a nanobiosensor based on Forster resonance energy transfer (FRET) between semiconductor nanocrystals (quantum dots, QDs) and dark quencher-labeled peptide probes to detect biologically active BoNT/E in aqueous media. The peptide probes contain a specific cleavage site for active BoNT/E. QD photoluminescence, which changes intensity due to FRET when the peptide probe is cleaved, was used to indicate toxin presence and quantity. The detection of a BoNT/E light chain (LcE) and holotoxin was observed within 3 h. The limits of detection were 0.02 and 2 ng/mL for LcE and holotoxin, respectively. The nanobiosensor shows good specificity toward the target in tests with nontarget BoNT serotypes. The high sensitivity, simple operation, short detection time, and ability to be used in parallel with probes developed for other BoNT serotypes indicate that the nanobiosensor will be useful for rapid BoNT/E detection and serotype discrimination in food analysis.

botulinum neurotoxin E↗
DOE OSTI2022

Assignment of structural transitions during mechanical unwrapping of nucleosomes and their disassembly products

Nucleosome DNA unwrapping and its disassembly into hexasomes and tetrasomes is necessary for genomic access and plays an important role in transcription regulation. Previous single-molecule mechanical nucleosome unwrapping revealed a low- and a high-force transitions, and force-FRET pulling experiments showed that DNA unwrapping is asymmetric, occurring always first from one side before the other. However, the assignment of DNA segments involved in these transitions remains controversial. Here, using high-resolution optical tweezers with simultaneous single-molecule FRET detection, we show that the low-force transition corresponds to the undoing of the outer wrap of one side of the nucleosome (∼27 bp), a process that can occur either cooperatively or noncooperatively, whereas the high-force transition corresponds to the simultaneous unwrapping of ∼76 bp from both sides. This process may give rise stochastically to the disassembly of nucleosomes into hexasomes and tetrasomes whose unwrapping/rewrapping trajectories we establish. In contrast, nucleosome rewrapping does not exhibit asymmetry. To rationalize all previous nucleosome unwrapping experiments, it is necessary to invoke that mechanical unwrapping involves two nucleosome reorientations: one that contributes to the change in extension at the low-force transition and another that coincides but does not contribute to the high-force transition.

59 BASIC BIOLOGICAL SCIENCES↗