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All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Data and scripts associated with “Non-random processes impacting organic matter chemistry are maximized in mid-order streams”

NOTE: The manuscript associated with this data package is currently in review. The data may be revised based on reviewer feedback. Upon manuscript acceptance, this data package will be updated with the final dataset and additional metadata. This data package is associated with the publication “Non-random processes impacting organic matter chemistry are maximized in mid-order streams” submitted to Limnology and Oceanography (L&O) by Danczak et al. (in review). This package contains data and scripts used to investigate dissolved organic matter (DOM) molecular chemistry and diversification processes across 47 surface-water sampling sites in the Yakima River Basin, Washington, USA, during an August 2021 sampling campaign. The package contains analyses of ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS), geochemical measurements, geospatial attributes, molecular diversity, and meta-metabolome ecological null models needed to reproduce the main manuscript results. The underlying field data were pulled from exising data packages at https://doi.org/10.15485/1892052 (Fulton et al., 2022) and https://doi.org/10.15485/1898914 (Grieger et al., 2022). For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. We thank the following organizations for providing access to field locations for sample collection: the United States Forest Service, Washington Department of Fish and Wildlife, Washington Department of Natural Resources, the Confederated Tribes and Bands of the Yakama Nation, and the Cowiche Canyon Conservatory. Research was conducted under Washington State Parks and Recreation Commission Scientific Research Permit #210901. We are grateful to the Yakama Nation Tribal Council and Yakama Nation Fisheries for their collaboration in facilitating sample collection and ensuring data usage aligns with their values and worldview. This data package contains an R-Markdown file for analyses and five folders: (1) Data, (2) Geospatial Data, (3) Supplemental_Files, (5) Figures_pdf, (4) and src. The Data folder contains tabular inputs and derived files used in the manuscript analysis. The Geospatial Data folder contains climate and water-balance, hydrologic, land-cover, population/regional water-use, stream, topographic, and stream-order attribute CSV files. The src folder contains scripts used to process data, run analyses, and generate figures. The Figures_pdf folder contains manuscript figure outputs. The Supplemental_Files folder contains supplemental analysis products. All files are .csv, .pdf, .html, .png, .R, .Rmd, .svg, or .tre. This data package is associated with the rcfsa-RC2-SPS_Null_Modeling repository found at https://github.com/river-corridors-sfa/rcfsa-RC2-SPS_Null_Modeling.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Feasibility Study of Replacing the R/V Robert Gordon Sproul with a Hybrid Vessel Employing Zero-emission Propulsion Technology

This project is a natural "follow-on" to the 2017 MARAD-funded project establishing the technical, regulatory, and economic feasibilities of a zero-emission hydrogen fuel-cell coastal research vessel named the Zero-V. In this follow-on project, we examine the applicability of hydrogen fuel-cell propulsion technology for a different kind of vessel, namely a smaller coastal/local research vessel targeted as a replacement for the Scripps Institution of Oceanography (SIO) R/V Robert Gordon Sproul, which is approaching the end of its service life.

08 HYDROGEN↗
DOE OSTI2021

Development of Algal Biomass Yield Improvements in an Integrated Process (Final Report)

This project built on the success of Global Algae Innovations Algae Biomass Yield Phase 1 project to accelerate the commercialization of algal biofuels through development of an integrated, economical, photosynthetic, open raceway system to produce algal oil. Two parallel pathways to a biofuel were investigated. In the algal crude oil pathway, highlighted in blue, the dewatered algal biomass slurry is used as a feed to hydrothermal liquefaction to produce an algae crude oil and recycle aqueous stream. In the algal lipid oil pathway, highlighted in green, the algal biomass slurry is dried, and the oil is extracted to produce an algal lipid oil biofuel intermediate and a high protein algae meal co-product. Upgrading to drop-in fuels has been demonstrated for the biofuel intermediates in both pathways. Since the algal lipid oil pathway requires lipid accumulation, the productivity is generally lower than the algal crude oil pathway, but the required productivity for economical algal biofuel production is also lower because the coproduct value is greater. The outdoor cultivation was performed at the Kauai Algae Farm. The project team has expertise across the full breadth strain development, advanced algal cultivation, open raceway contamination control, CO 2 supply, harvesting, dewatering, extraction, hydrothermal liquefaction, technoeconomic analysis and life cycle analysis: Hildebrand laboratory at Scripps Institution of Oceanography – diatom strain development. Mayfield laboratory at UCSD - green algae strain development. TSD Management Associates- CO 2 supply, algal harvesting and dewatering, and algal drying and extraction. Qualitas - large-scale test site for algal harvesting technology. Texas A&M University - algal drying and extraction technology. Pacific Northwest National Laboratory - hydrothermal liquefaction technology. GE Water and Power - membrane technology. National Renewable Energy Laboratory - algal techno-economic analysis. Phase 1 of the project resulted in tremendous productivity and pre-processing improvements in an integrated, large-scale, low-cost cultivation and pre-processing process that moved algal technology closer to economic viability for biofuels than ever before. Phase 2 accomplishments further facilitate development of a commercial algal biofuel industry by adding: several top performing strains and strain development tools including breeding; open-pond cultivation innovations that achieved a 30% improvement in overall productivity, an 83% reduction in cost, and a 95% reduction in energy use relative to conventional technology; further improvements in harvesting that led to the Zobi harvester ® as a universal, economical, low energy, commercially available microalgae harvesting solution; breakthroughs in drying and extraction including a new low energy drying process and several new low energy extraction unit operations that together with the Zobi harvester ® achieve a 90% reduction in cost and 97% reduction in energy use relative to conventional technology. These improvements are sufficient to enable economical production of algae biofuel and protein meal co-product if the process were scaled up to a commercial-scale 5,000-acre algae farm.

09 BIOMASS FUELS↗
DOE OSTI2022

Polar Cloud Microphysics and Surface Energy Budget from AWARE (Final Technical Report)

This was a collaborative project between the Scripps Institution of Oceanography at the University of California San Diego (SIO), Byrd Polar and Climate Research Center at The Ohio State University (BPCRC), The Department of Meteorology and Atmospheric Science at The Pennsylvania State University (Penn State), and Brookhaven National Laboratory (BNL). The project’s over-arching objectives involved maximizing the scientific potential of the ARM West Antarctic Radiation Experiment (AWARE) data set, in two respects: (1) application of polar-optimized climate models to test the most current and comprehensive cloud microphysical parameterizations; and (2) analysis of the most advanced ARM Mobile Facility sensors (e.g., cloud radar, spectroradiometer, and aerosol observing system data) to advance understanding of Antarctic cloud microphysical and radiative properties, particularly on a climatological basis with emphasis on contrasts with the high Arctic. The team’s efforts have resulted in 16 peer-review publications, in addition to an overview of the AWARE campaign in the Bulletin of the American Meteorological Society. Our emphasis throughout this program was to go beyond the traditional “case study” approach to model evaluation, in which a “classical” or otherwise well-characterized surface-atmosphere-cloud system of short duration is simulated by several climate models. Instead, we attempted analysis of longer time series in the AWARE data, both climatologically and with models. We have numerous successful results from both AWARE locations: The main AMF-2 deployment at McMurdo Station on Ross Island (13 months duration), and the extended facility at the West Antarctic Ice Sheet (WAIS) Divide Ice Camp (40 days during austral summer 2015-16).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Automated Model for Improved Mapping of Country-Scale High-Resolution Coastal Bathymetry

Accurate and up-to-date maps of coastal bathymetry are critical for a variety of sectors from vessel navigation to port construction and are increasingly vital to inform coastal infrastructure management amid accelerating sea-level rise and more frequent and severe storm-surge events. The primary challenges to accurate and efficient bathymetric mapping from optical remote sensing are: accurately modeling light attenuation in both the atmosphere and water column; and inefficient data processing pipelines for highresolution satellite imagery. To address the effects of light attenuation within the water-column we have developed a novel physics-based bathymetry model that accounts for variations in water-column inherent optical properties on a pixel-by-pixel basis in optically-shallow aquatic environments, which represents a major advancement. For applications to satellite imagery, we have developed a software package that automatically applies the robust 6S atmospheric correction algorithm, estimates the bottom depth from the physics-based bathymetry model, which corrects for attenuation by suspended particulate matter and colored dissolved organic matter in the water column on a pixel-by-pixel basis, and leverages highperformance computing for rapid application to region-scale (e.g., CONUS) 2-meter resolution imagery datasets. Our approach is tailored to sensors that collect data at two-meter resolution with high return times for frequent updates. We mapped 591 WorldView satellite images for Florida, North Carolina, and Alaska and validated the maps against LiDAR-derived bathymetry data. Results show median RMSE of 1.75, 1.59, and 2.67 meters, respectively. By combining the strengths of Oak Ridge National Laboratory in high-performance computing and remote-sensing science with the water-column modeling expertise of Scripps Institution of Oceanography we advance the state of bathymetric mapping capability.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Maritime Fuel Cell Generator Project: 2018 – 2023

This report summarizes activity in the Maritime Fuel Cell (MarFC) Generator Project from 2018 – 2023. FY 2018 saw the implementation of upgrades and repairs, making the unit more reliable and operator friendly. In FY2019 the team engaged the Scripps Institution of Oceanography (SIO) to use the MarFC to provide zero-emission shore power to the research vessel R/V Robert Gordon Sproul while in port at the Nimitz Marine Facility in San Diego, CA. In FY2020, the MarFC unit was shipped to San Diego, CA. A fueling contract with IGX was established to support MarFC operations at SIO, with renewable hydrogen provided by the California State University Los Angeles (CSULA) hydrogen station. The project team (Sandia, Cummins/Hydrogenics) provided training to SIO staff on the technical details of the MarFC, the safe use of hydrogen in general and the MarFC in particular. The first fueling of the unit at the SIO pier was successfully completed by IGX. The first powering of a vessel with fuel-cell shore power was conducted with the R/V Robert Gordon Sproul. While the mechanical systems (lights, AC, ventilation, hydraulics, pumps and cranes) were powered without incident, problems arose when powering the computer systems. Inspections carried out in FY2021 revealed the MarFC needed routine maintenance. Maintenance was performed and the unit was upgraded. The MarFC was turned on after the year pause, and initial test data on power levels and stability were collected. FY2022 was a year spent repairing, upgrading and testing the MarFC unit. Spikes in power and voltage were observed above 60 kW that could potentially extend below 60 kW with time. Such spikes could cause problems with the Sproul electrical systems. These age-related problems, the extended time for the Sproul spent in dry dock for scheduled upgrades, and the associated need to reschedule the vessel’s high-priority science missions made it no longer possible to deploy the unit at SIO. After due consideration, the decision was made by DOE, MARAD and the project team to cease the deployment, remove the MarFC from SIO, and not pursue further deployment activities. On December 2, 2022, the MarFC unit was removed from the Scripps Nimitz Marine Facility and shipped to Fridley, Michigan. The Cummins/Hydrogenics plan for the unit is to assess the condition of the MarFC subcomponents, and then use it as a training/learning system for technical employees new to hydrogen fuel-cell technology. After summarizing project activity from 2018 – 2023, this report provides a review of lessons learned. This report provides next steps in contemplating a follow-on project that would further advance the use of fuel-cell-based shore power in a marine setting. A comparison is made of the project results to the original objectives. This report ends with an accounting of presentations stemming from the project, and a list of references.

08 HYDROGEN↗
DOE OSTI2024

EPCAPE-Dalhousie Field Campaign Report

This project supported the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE), which aimed to characterize the extent, radiative properties, aerosol interactions, and precipitation of stratocumulus clouds in the Eastern Pacific coastal region of La Jolla, California. Given the frequent anthropogenic aerosols emitted into this region, characterization of this important coastal cloud region and the aerosol impact on the cloud characteristics will improve the understanding of aerosol indirect effects and its representation in global climate models. This specific project deployed the fog droplet monitor (FM-120, Droplet Measurement Technologies) at the Scripps Institution of Oceanography’s Mt. Soledad site from 16 February 2023 to 15 February 2024. This instrument measured droplet number size spectra between 2 and 50 microns, from which droplet number concentration, liquid water content, and effective diameter were calculated. These measurements will be used to characterize the seasonal variability of clouds at Mt. Soledad and investigate differences in cloud properties under regional polluted and clean marine conditions. The collected data will soon be posted as part of the digital collection for EPCAPE data hosted by the University of California, San Diego (Russell et al. 2023).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

EPCAPE Mt. Soledad In Situ Ozone Field Campaign Report

The focus of the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) is to characterize the extent, radiative properties, aerosol interactions, and precipitation characteristics of stratocumulus clouds in the Eastern Pacific Ocean across all four seasons at a coastal location, the Scripps Pier and the Scripps Institution of Oceanography Mt. Soledad sites in La Jolla, California. An important enhancement in support of this study was the measurement of ozone at the Scripps Mt. Soledad site to help in distinguishing in situ sampling of air parcels originating from regional polluted and clean marine sources.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Challenges of open data in aquatic sciences: issues faced by data users and data providers

Free use and redistribution of data (i.e., Open Data) increases the reproducibility, transparency, and pace of aquatic sciences research. However, barriers to both data users and data providers may limit the adoption of Open Data practices. Here, we describe common Open Data challenges faced by data users and data providers within the aquatic sciences community (i.e., oceanography, limnology, hydrology, and others). These challenges were synthesized from literature, authors’ experiences, and a broad survey of 174 data users and data providers across academia, government agencies, industry, and other sectors. Through this work, we identified seven main challenges: 1) metadata shortcomings, 2) variable data quality and reusability, 3) open data inaccessibility, 4) lack of standardization, 5) authorship and acknowledgement issues 6) lack of funding, and 7) unequal barriers around the globe. Our key recommendation is to improve resources to advance Open Data practices. This includes dedicated funds for capacity building, hiring and maintaining of skilled personnel, and robust digital infrastructures for preparation, storage, and long-term maintenance of Open Data. Further, to incentivize data sharing we reinforce the need for standardized best practices to handle data acknowledgement and citations for both data users and data providers. We also highlight and discuss regional disparities in resources and research practices within a global perspective.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Resource Occurrence and Productivity in Existing and Proposed Wind Energy Lease Areas on the Northeast US Shelf

States in the Northeast United States have the ambitious goal of producing more than 22 GW of offshore wind energy in the coming decades. The infrastructure associated with offshore wind energy development is expected to modify marine habitats and potentially alter the ecosystem services. Species distribution models were constructed for a group of fish and macroinvertebrate taxa resident in the Northeast US Continental Shelf marine ecosystem. These models were analyzed to provide baseline context for impact assessment of lease areas in the Middle Atlantic Bight designated for renewable wind energy installations. Using random forest machine learning, models based on occurrence and biomass were constructed for 93 species providing seasonal depictions of their habitat distributions. We developed a scoring index to characterize lease area habitat use for each species. Subsequently, groups of species were identified that reflect varying levels of lease area habitat use ranging across high, moderate, low, and no reliance on the lease area habitats. Among the species with high to moderate reliance were black sea bass ( Centropristis striata ), summer flounder ( Paralichthys dentatus ), and Atlantic menhaden ( Brevoortia tyrannus ), which are important fisheries species in the region. Potential for impact was characterized by the number of species with habitat dependencies associated with lease areas and these varied with a number of continuous gradients. Habitats that support high biomass were distributed more to the northeast, while high occupancy habitats appeared to be further from the coast. There was no obvious effect of the size of the lease area on the importance of associated habitats. Model results indicated that physical drivers and lower trophic level indicators might strongly control the habitat distribution of ecologically and commercially important species in the wind lease areas. Therefore, physical and biological oceanography on the continental shelf proximate to wind energy infrastructure development should be monitored for changes in water column structure and the productivity of phytoplankton and zooplankton and the effects of these changes on the trophic system.

17 WIND ENERGY↗
DOE OSTI2024

Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and has potential for contributing to ocean ecology and biogeochemical studies. A blinded multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. Euphotic zone samples from the Bermuda Atlantic Time-series Study (BATS) in the North Atlantic Ocean collected by in situ pumps and the autonomous underwater vehicle (AUV) Clio were distributed with a paired metagenome, and one-dimensional (1D) liquid chromatographic data-dependent acquisition mass spectrometry analysis was stipulated. Analysis of mass spectra from seven laboratories through a common bioinformatic pipeline identified a shared set of 1056 proteins from 1395 shared peptide constituents. Quantitative analyses showed good reproducibility: pairwise regressions of spectral counts between laboratories yielded R 2 values averaged 0.62±0.11, and a Sørensen similarity analysis of the top 1000 proteins revealed 70 %–80 % similarity between laboratory groups. Taxonomic and functional assignments showed good coherence between technical replicates and different laboratories. A bioinformatic intercomparison study, involving 10 laboratories using eight software packages, successfully identified thousands of peptides within the complex metaproteomic datasets, demonstrating the utility of these software tools for ocean metaproteomic research. Lessons learned and potential improvements in methods were described. Future efforts could examine reproducibility in deeper metaproteomes, examine accuracy in targeted absolute quantitation analyses, and develop standards for data output formats to improve data interoperability. Together, these results demonstrate the reproducibility of metaproteomic analyses and their suitability for microbial oceanography research, including integration into global-scale ocean surveys and ocean biogeochemical models.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Multifrequency radar observations of marine clouds during the EPCAPE campaign

The Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) was a year-round campaign conducted by the US Department of Energy at the Scripps Institution of Oceanography in La Jolla, CA, USA, with a focus on characterizing atmospheric processes at a coastal location. The ground-based prototype of a new Ka-, W-, and G-band (35.75, 94.88, and 238.8 GHz) profiling atmospheric radar, named CloudCube, which was developed at the Jet Propulsion Laboratory, took part in the experiment during 6 weeks in March and April 2023. This article describes the unique data sets that were obtained during the field campaign from a variety of marine clouds and light precipitation. These are, to the best of the authors' knowledge, the first observations of atmospheric clouds using simultaneous multifrequency measurements including 238.8 GHz. These data sets therefore provide an exceptional opportunity to study and analyze hydrometeors with diameters in the millimeter- and submillimeter size range that can be used to better understand cloud and precipitation structure, formation, and evolution. The data sets referenced in this article are intended to provide a complete, extensive, and high-quality collection of G-band data in the form of Doppler spectra and Doppler moments. In addition, Ka-band and W-band reflectivity and Ka-, W-, and G-band reflectivity ratio profiles are included for several cases of interest on 6 different days.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

LIGHT-bgcArgo-1.0: using synthetic float capabilities in E3SMv2 to assess spatiotemporal variability in ocean physics and biogeochemistry

Since their advent over 2 decades ago, autonomous Argo floats have revolutionized the field of oceanography, and, more recently, the addition of biogeochemical and biological sensors to these floats has greatly improved our understanding of carbon, nutrient, and oxygen cycling in the ocean. While Argo floats offer unprecedented horizontal, vertical, and temporal coverage of the global ocean, uncertainties remain about whether Argo sampling frequency and density capture the true spatiotemporal variability in physical, biogeochemical, and biological properties. As the true distributions of, e.g., temperature or oxygen are unknown, these uncertainties remain difficult to address with Argo floats alone. Numerical models with synthetic observing systems offer one potential avenue to address these uncertainties. Here, we implement synthetic biogeochemical Argo floats into the Energy Exascale Earth System Model version 2 (E3SMv2), which build on the Lagrangian In Situ Global High-Performance Particle Tracking (LIGHT) module in E3SMv2 (E3SMv2-LIGHT-bgcArgo-1.0). Since the synthetic floats sample the model fields at model run time, the end user defines the sampling protocol ahead of any model simulation, including the number and distribution of synthetic floats to be deployed, their sampling frequency, and the prognostic or diagnostic model fields to be sampled. Using a 6-year proof-of-concept simulation, we illustrate the utility of the synthetic floats in different case studies. In particular, we quantify the impact of (i) sampling density on the float-derived detection of deep-ocean change in temperature or oxygen and on float-derived estimates of phytoplankton phenology, (ii) sampling frequency and sea-ice cover on float trajectory lengths and hence float-derived estimates of current velocities, and (iii) short-term variability in ecosystem stressors on estimates of their seasonal variability.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1969

Future fields of control application

Application of control theory to production engineering, transportation systems, urban development, biological oceanography, mass communications, and socio-economic problems

Source record↗