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At least 199 records · Page 11

Separating the Influences of Low-Latitude Warming and Sea Ice Loss on Northern Hemisphere Climate Change

Abstract Analyzing a multimodel ensemble of coupled climate model simulations forced with Arctic sea ice loss using a two-parameter pattern-scaling technique to remove the cross-coupling between low- and high-latitude responses, the sensitivity to high-latitude sea ice loss is isolated and contrasted to the sensitivity to low-latitude warming. Despite some differences in experimental design, the Northern Hemisphere near-surface atmospheric sensitivity to sea ice loss is found to be robust across models in the cold season; however, a larger intermodel spread is found at the surface in boreal summer, and in the free tropospheric circulation. In contrast, the sensitivity to low-latitude warming is most robust in the free troposphere and in the warm season, with more intermodel spread in the surface ocean and surface heat flux over the Northern Hemisphere. The robust signals associated with sea ice loss include upward turbulent and longwave heat fluxes where sea ice is lost, warming and freshening of the Arctic Ocean, warming of the eastern North Pacific Ocean relative to the western North Pacific with upward turbulent heat fluxes in the Kuroshio Extension, and salinification of the shallow shelf seas of the Arctic Ocean alongside freshening in the subpolar North Atlantic Ocean. In contrast, the robust signals associated with low-latitude warming include intensified ocean warming and upward latent heat fluxes near the western boundary currents, freshening of the Pacific Ocean, salinification of the North Atlantic, and downward sensible and longwave fluxes over the ocean.

54 ENVIRONMENTAL SCIENCES↗

Changes in the SST Seasonal Cycle in a Warmer North Pacific without Ocean Dynamical Feedbacks

Climate models project a significant intensification of the sea surface temperature (SST) seasonal cycle over the subpolar North Pacific due to global warming, with the shallower mixed layer widely recognized as the dominant factor. However, employing slab ocean experiments with only ocean–atmosphere thermal coupling, we find a substantial contribution from changes in surface heat flux to this seasonal cycle intensification. In particular, the stronger Newtonian cooling effect in winter acts as a more potent damping than in summer. This differential damping inhibits the warming in colder seasons, significantly contributing to the intensified SST seasonal cycle in the subpolar North Pacific. In addition, consistent phase shifts in the North Pacific are identified across CMIP6 models. In the northwest North Pacific, a phase advance is associated with anomalous heating in early spring, driven by enhanced warm atmospheric advection from lower latitudes and sea ice melting in marginal seas. In contrast, the southeast North Pacific exhibits a phase delay attributed to the anomalous cooling in spring relative to autumn. This cooling is due to weakened trade winds and increased presence of high clouds. In conclusion, the former leads to stronger evaporative cooling in spring, while the latter impedes shortwave radiation from reaching the ocean.

54 ENVIRONMENTAL SCIENCES↗

El Nino and the Global Ocean Observing System

Until a decade ago, an often-quoted expression in oceanography is that very few observations are recorded throughout the ocean. Now, the sentiment is no longer valid in the uppermost 10% of the tropical Pacific Ocean nor at the surface of the global ocean. One of the remarkable legacies of the 1985-1994 Tropical Oceans Global Atmosphere (TOGA) Program is an in situ marine meteorological and upper oceanographic measurement array throughout the equatorial Pacific to monitor the development and maintenance of El Nino episodes. The TOGA Observing System, which initially consisted of moored- and drifting-buoy arrays, a network of commercial ships, and coastal and island stations, now includes a constellation of satellites and data-assimilating models to simulate subsurface oceanographic conditions. The El Nino and La Nina tropical Pacific Ocean observing system represents the initial phase of an integrated global ocean observing system. Remarkable improvements have been made in ocean model simulation of subsurface currents, but some problems persist. For example, the simulation of the South Equatorial Current (SEC) remains an important challenge in the 2S-2N Pacific equatorial wave guide. During El Nino the SEC at the equator is reduced and sometimes the direction is reversed, becoming eastward. Both conditions allow warm water stored in the western Pacific to invade the eastern region, creating an El Nino episode. Assimilation of data is a tenet of faith to correct simulation errors caused by deficiencies in surface fluxes (especially wind stress) and parameterizations of subgrid-scale physical processes. In the first of two numerical experiments, the Pacific SEC was simulated with and without assimilation of subsurface temperature data. Along the equator, a very weak SEC occurred throughout the eastern Pacific, independent of assimilation of data. However, as displayed in the diagram, in the western Pacific there was no satisfactory agreement between the two simulations. To help determine reliability of the simulated SEC in the western Pacific, current measurements recorded during the 9-19 October 1994 voyage of the French research vessel L'Atalante are also shown in the diagram. With data assimilation, the simulated SEC was in much better agreement with L'Atalante observations. The simulated SEC with data assimilation was far from perfect, in part because of the sparsity of subsurface temperature observations. In the next experiment, TOPEX/POSEIDON sea surface height data in combination with subsurface temperatures will be assimilated to assess further improvement of the simulation of the SEC.

Halpern, David↗

Assessing Decadal Predictability in an Earth-System Model Using Explainable Neural Networks

We show that explainable neural networks can identify regions of oceanic variability that contribute predictability on decadal timescales in a fully coupled Earth-system model. The neural networks learn to use sea-surface temperature anomalies to predict future continental surface temperature anomalies. We then use a neural-network explainability method called layerwise relevance propagation to infer which oceanic patterns lead to accurate predictions made by the neural networks. In particular, regions within the North Atlantic Ocean and North Pacific Ocean lend the most predictability for surface temperature across continental North America. We apply the proposed methodology to decadal variability, although the concept is generalizable to other timescales of predictability. Furthermore, while our approach focuses on predictable patterns of internal variability within climate models, it should be generalizable to observational data as well. Our study contributes to the growing evidence that explainable neural networks are important tools for advancing geoscientific knowledge.

58 GEOSCIENCES↗

On the circulation, water mass distribution, and nutrient concentrations of the western Chukchi Sea

Substantial amounts of nutrients and carbon enter the Arctic Ocean from the Pacific Ocean through the Bering Strait, distributed over three main pathways. Water with low salinities and nutrient concentrations takes an eastern route along the Alaskan coast, as Alaskan Coastal Water. A central pathway exhibits intermediate salinity and nutrient concentrations, while the most nutrient-rich water enters the Bering Strait on its western side. Towards the Arctic Ocean, the flow of these water masses is subject to strong topographic steering within the Chukchi Sea with volume transport modulated by the wind field. In this contribution, we use data from several sections crossing Herald Canyon collected in 2008 and 2014 together with numerical modelling to investigate the circulation and transport in the western part of the Chukchi Sea. We find that a substantial fraction of water from the Chukchi Sea enters the East Siberian Sea south of Wrangel Island and circulates in an anticyclonic direction around the island. This water then contributes to the high-nutrient waters of Herald Canyon. The bottom of the canyon has the highest nutrient concentrations, likely as a result of addition from the degradation of organic matter at the sediment surface in the East Siberian Sea. The flux of nutrients (nitrate, phosphate, and silicate) and dissolved inorganic carbon in Bering Summer Water and Winter Water is computed by combining hydrographic and nutrient observations with geostrophic transport referenced to lowered acoustic Doppler current profiler (LADCP) and surface drift data. Even if there are some general similarities between the years, there are differences in both the temperature–salinity and nutrient characteristics. To assess these differences, and also to get a wider temporal and spatial view, numerical modelling results are applied. According to model results, high-frequency variability dominates the flow in Herald Canyon. This leads us to conclude that this region needs to be monitored over a longer time frame to deduce the temporal variability and potential trends.

54 ENVIRONMENTAL SCIENCES↗

Index maps for Gemini earth photography

Index maps for the Gemini missions are presented; these are for the Gemini 3 through Gemini 12 missions. The maps are divided into four sections: the whole earth; the Western Hemisphere and eastern Pacific Ocean; Africa, India, and the Near East; and Asia, Australia, and the Pacific Ocean.

Giddings, L. E.↗

On global gravity anomalies and two-scale mantle convection

The two-scale model of mantle convection developed by Richter and Parsons (1975) predicts that if the depth of the convective layer is about 600 km, then for a plate moving at 10 cm/yr, longitudinal convective rolls will be produced in about 50 million years, and the strike of these rolls indicates the direction of motion of the plate relative to the upper mantle. The paper tests these predictions by examining a new global free air gravity model complete to the 30th degree and order. The free air gravity map developed shows a series of linear positive and negative anomalies (with transverse wavelengths of about 2000 km) spanning the Pacific Ocean, crossing the Pacific rise and striking parallel to the Hawaiian seamounts. It is suggested that the pattern of these anomalies may indicate the presence of longitudinal convective rolls beneath the Pacific plates, a result which tends to support the predictions of Richter and Parsons.

Marsh, B. D.↗

Some aspects of the interannual variation of mean monthly sea level pressure on the Southern Hemisphere

We calculate the seasonal changes that are largely associated with the half-yearly wave, autocorrelation functions, and the mean planetary waves in the monthly mean sea level pressure from two data sources. One covers the period from 1951 to 1958 (from the South African Weather Bureau) and the other the period from 1972 to 1980 (from the Australian Bureau of Meteorology). Thirty years of data from stations over the southern hemisphere are used to assess the reliability of the differences between the two periods that the grid-point data show. These differences are especially large over the Atlantic Ocean and the Pacific Ocean. The station data confirm the changes between the two periods and thus the observed differences in the mean waves, which are especially large for wave number 3.

Mo, K. C.↗

The Satellite Passive-Microwave Record of Sea Ice in the Ross Sea Since Late 1978

Satellites have provided us with a remarkable ability to monitor many aspects of the globe day-in and day-out and sea ice is one of numerous variables that by now have quite substantial satellite records. Passive-microwave data have been particularly valuable in sea ice monitoring, with a record that extends back to August 1987 on daily basis (for most of the period), to November 1970 on a less complete basis (again for most of the period), and to December 1972 on a less complete basis. For the period since November 1970, Ross Sea sea ice imagery is available at spatial resolution of approximately 25 km. This allows good depictions of the seasonal advance and retreat of the ice cover each year, along with its marked interannual variability. The Ross Sea ice extent typically reaches a minimum of approximately 0.7 x 10(exp 6) square kilometers in February, rising to a maximum of approximately 4.0 x 10(exp 6) square kilometers in September, with much variability among years for both those numbers. The Ross Sea images show clearly the day-by-day activity greatly from year to year. Animations of the data help to highlight the dynamic nature of the Ross Sea ice cover. The satellite data also allow calculation of trends in the ice cover over the period of the satellite record. Using linear least-squares fits, the Ross Sea ice extent increased at an average rate of 12,600 plus or minus 1,800 square kilometers per year between November 1978 and December 2007, with every month exhibiting increased ice extent and the rates of increase ranging from a low of 7,500 plus or minus 5,000 square kilometers per year for the February ice extents to a high of 20,300 plus or minus 6,100 kilometers per year for the October ice extents. On a yearly average basis, for 1979-2007 the Ross Sea ice extent increased at a rate of 4.8 plus or minus 1.6 % per decade. Placing the Ross Sea in the context of the Southern Ocean as a whole, over the November 1978-December 2007 period the Ross Sea had the highest rate of increase in sea ice coverage of any of five standard divisions of the Southern Ocean, although the Weddell Sea, Indian Ocean, and Western Pacific Ocean all also had sea ice increases, while only the Bellingshausen/Smundsen Seas experienced overall sea ice decreases. Overall, the Southern Ocean sea ice cover increased at an average rate of 10,800 plus or minus 2,500 square kilometers per year between November 1978 and December 2007, with every month showing positive values although with some of these values not being statistically significant. The sea ice increase since November 1978 was preceded by a sharp decrease in Southern Ocean ice coverage in the 1970's and is in marked contrast to the decrease in Arctic sea ice coverage that has occurred both in the period since November 1978 and since earlier in the 1970's. On a yearly average bases, for 1979-2007 the Southern Ocean sea ice extent increased at a rate of 1.0 plus or minus 0.4% per decade, whereas the Arctic ice extent decreased at the much greater rate of 4.0 plus or minus 0.4 percent per decade (closer to the % per decade rate of increase in the Ross Sea). Considerable research is ongoing to explain the differences.

Parkinson, Claire L.↗

Stationarity of the Tropical Pacific Teleconnection to North America in CMIP5 PMIP3 Model Simulations

The temporal stationarity of the teleconnection between the tropical Pacific Ocean and North America (NA) is analyzed in atmosphere-only, and coupled last-millennium, historical, and control runs from the Coupled Model Intercomparison Project Phase 5 data archive. The teleconnection, defined as the correlation between December-January-February (DJF) tropical Pacific sea surface temperatures (SSTs) and DJF 200 mb geopotential height, is found to be nonstationary on multidecadal timescales. There are significant changes in the spatial features of the teleconnection over NA in continuous 56-year segments of the last millennium and control simulations. Analysis of atmosphere-only simulations forced with observed SSTs indicates that atmospheric noise cannot account for the temporal variability of the teleconnection, which instead is likely explained by the strength of, and multidecadal changes in, tropical Pacific Ocean variability. These results have implications for teleconnection-based analyses of model fidelity in simulating precipitation, as well as any reconstruction and forecasting efforts that assume stationarity of the observed teleconnection.

histories↗

FATE: The drifting Fish Aggregating Device (dFAD) TrajEctory Modeling Tool for Marine Protected Area Management

Drifting fish aggregating devices (dFADs) routinely enter marine protected areas (MPAs) and may undermine MPA protections by drifting out of the MPA with the aggregated fish biomass, or grounding and damaging sensitive coral reef habitats. MPA managers must decide whether to deploy resources in response to dFAD intrusions. To address this issue, we propose to quantify dFAD activity in relation to ocean currents, fish biomass, and animal telemetry at Palmyra Atoll, part of the Pacific Remote Islands Marine National Monument in the central Pacific Ocean. Specifically, we propose to develop the dFAD TrajEctory Tool (FATE). FATE is an innovative decision support tool that will use NASA observations and numerical models to predict future dFAD trajectories and inform TNC and USFWS whether they should deploy tactical resources (boats, personnel) to monitor, intercept, or retrieve dFADs that have entered the Refuge. The objectives are to use NASA observational constraints on ocean winds and currents to assist with the ecological management of the Palmyra Atoll NWR and MPA. Specifically, we will deliver an operational software tool that quantifies the grounding risk associated with each tracked dFAD and decision support for grounding risk mitigation via intercept at sea. This project addresses Element 3.3: Protected area management of the 2022 Ecological Conservation Solicitation by developing a tool needed by MPA managers to make tactical and strategic decisions focused on improving the effectiveness of MPAs. By quantifying the riskof dFADs, this project will help monitor and better inform the deployment of tactical (ships/personnel) and strategic (legislative) resources to better manage MPAs. This project is a collaboration between The Nature Conservancy, who operate long-term projects within the Palmyra MPA, and the U.S. Fish and Wildlife Service, who have the authority to make decisions related to its management. We expect that the results of our proposal will benefit marine resources within the Palmyra MPA and could be transferred to other remote MPAs within the US and other island nations within the Pacific Ocean.

TrajEctory↗

Effects of surface anomalies on certain model generated meteorological histories

The Mintz-Arakawa 2-level general circulation model has been used in a series of experiments to compute the response of the model atmosphere to: (1) a positive sea surface temperature anomaly in the North Pacific Ocean in summer and in winter, (2) an identical anomaly in the South Pacific Ocean in the Southern Hemisphere winter, and (3) anomalous northward and southward displacements of the Northern Hemisphere snow line over the continents. In each case computations were carried out for 90 forecast days. Results are shown in terms of the differences between anomaly and control histories. Time series of certain regional response indices, including area-average sea level pressure and 600 mb circulation indices, as well as 30-day mean sea level pressure maps are used in the analysis. Of particular interest is the evidence of significant interhemisphere influence.

Spar, J.↗

STS-107 Mission Highlights Resource, Part 3 of 4

This video, Part 3 of 4, shows the activities of the STS-107 crew during flight days 9 through 12 of the Columbia orbiter's final flight. The crew consists of Commander Rick Husband, Pilot William McCool, Payload Commander Michael Anderson, Mission Specialists David Brown, Kalpana Chawla, and Laurel Clark, and Payload Specialist Ilan Ramon. On flight day 9 David Brown and other crew members are at work on experiments in the Spacehab research module, and imagery is shown from the Mediterranean Israeli Dust Experiment (MEIDEX) on a pass over North Africa and the Horn of Africa. Ilan Ramon narrates part of the footage from flight day 10, and intravehicular activities of the astronauts onboard Columbia are shown, as well as views of the Gulf of Aden, and Lake Chad, which is seen with the back of the orbiter in the foreground. Rick Husband narrates the footage from day 11, which includes cleaning duties and maintenance, as well as an excellent view of the Sinai Peninsula, Israel, and Jordan, as well as the Mediterranean Sea, Red Sea, and Gulf of Aqaba. The highlight of flight day 12 is a conversation between Columbia's crew and the crew of the International Space Station (ISS). A special section of Earth views at the end of the video shows: 1) Atlantic Ocean, Strait of Gibraltar, Mediterranean Sea, Iberian Peninsula, Morocco, and Algeria; 2) Baja Peninsula; 3) Cyprus and Mediterranean Sea; 4) Florida; 5) Earth limb and Pacific Ocean; 6) North Carolina Outer Banks, Cape Hatteras, and Atlantic Ocean; 7) Houston with zoom out to Texas and Louisiana; 8) Mt. Vesuvius (Italy); 9) Earth limb and Atlantic Ocean; 10) Earth limb and terminator, and Pacific Ocean; 11) Saudia Arabia, Yemen, Oman, and Arabian Sea.

Source record↗

Estimation of Interbasin Transport Using Ocean Bottom Pressure: Theory and Model for Asian Marginal Seas

The Asian Marginal Seas are interconnected by a number of narrow straits, such as the Makassar Strait connecting the Pacific Ocean with the Indian Ocean, the Luzon Strait connecting the South China Sea with the Pacific Ocean, and the Korea/Tsushima Strait connecting the East China Sea with the Japan/East Sea. Here we propose a method, the combination of the "geostrophic control" formula of Garrett and Toulany (1982) and the "hydraulic control" theory of Whitehead et al. (1974), allowing the use of satellite-observed sea-surface-height (SSH) and ocean-bottom-pressure (OBP) data for estimating interbasin transport. The new method also allows separating the interbasin transport into surface and bottom fluxes that play an important role in maintaining the mass balance of the regional oceans. Comparison with model results demonstrates that the combined method can estimate the seasonal variability of the strait transports and is significantly better than the method of using SSH or OBP alone.

hydraulic control↗

The potential role of organics in new particle formation and initial growth in the remote tropical upper troposphere

Abstract. Global observations and model studies indicate that new particle formation (NPF) in the upper troposphere (UT) and subsequent particles supply 40 %–60 % of cloud condensation nuclei (CCN) in the lower troposphere, thus affecting the Earth's radiative budget. There are several plausible nucleation mechanisms and precursor species in this atmospheric region, which, in the absence of observational constraints, lead to uncertainties in modeled aerosols. In particular, the type of nucleation mechanism and concentrations of nucleation precursors, in part, determine the spatial distribution of new particles and resulting spatial distribution of CCN from this source. Although substantial advances in understanding NPF have been made in recent years, NPF processes in the UT in pristine marine regions are still poorly understood and are inadequately represented in global models. Here, we evaluate commonly used and state-of-the-art NPF schemes in a Lagrangian box model to assess which schemes and precursor concentrations best reproduce detailed in situ observations. Using measurements of aerosol size distributions (0.003 < Dp < 4.8 µm) in the remote marine troposphere between ∼0.18 and 13 km altitude obtained during the NASA Atmospheric Tomography (ATom) mission, we show that high concentrations of newly formed particles in the tropical UT over both the Atlantic and Pacific oceans are associated with outflow regions of deep convective clouds. We focus analysis on observations over the remote Pacific Ocean, which is a region less perturbed by continental emissions than the Atlantic. Comparing aerosol size distribution measurements over the remote Pacific with box model simulations for 32 cases shows that none of the NPF schemes most commonly used in global models, including binary nucleation of sulfuric acid and water (neutral and ion-assisted) and ternary involving sulfuric acid, water, and ammonia, are consistent with observations, regardless of precursor concentrations. Through sensitivity studies, we find that the nucleation scheme among those tested that is able to explain most consistently (21 of 32 cases) the observed size distributions is that of Riccobono et al. (2014), which involves both organic species and sulfuric acid. The method of Dunne et al. (2016), involving charged sulfuric acid–water–ammonia nucleation, when coupled with organic growth of the nucleated particles, was most consistent with the observations for 5 of 32 cases. Similarly, the neutral sulfuric acid–water–ammonia method of Napari (2002), when scaled with a tuning factor and with organic growth added, was most consistent for 6 of 32 cases. We find that to best reproduce both nucleation and growth rates, the mixing ratios of gas-phase organic precursors generally need to be at least twice that of SO2, a proxy for dimethyl sulfide (DMS). Unfortunately, we have no information on the nature of oxidized organic species that participated in NPF in this region. Global models rarely include organic-driven nucleation and growth pathways in UT conditions where globally significant NPF takes place, which may result in poor estimates of NPF and CCN abundance and contribute to uncertainties in aerosol–cloud–radiation effects. Furthermore, our results indicate that the organic aerosol precursor vapors may be important in the tropical UT above marine regions, a finding that should guide future observational efforts.

54 ENVIRONMENTAL SCIENCES↗

Early Oligocene kelp holdfasts and stepwise evolution of the kelp ecosystem in the North Pacific

Kelp forests are highly productive and economically important ecosystems worldwide, especially in the North Pacific Ocean. However, current hypotheses for their evolutionary origins are reliant on a scant fossil record. Here, in this work, we report fossil hapteral kelp holdfasts from western Washington State, USA, indicating that kelp has existed in the northeastern Pacific Ocean since the earliest Oligocene. This is consistent with the proposed North Pacific origin of kelp associated with global cooling around the Eocene–Oligocene transition. These fossils also support the hypotheses that a hapteral holdfast, rather than a discoid holdfast, is the ancestral state in complex kelps and suggest that early kelps likely had a flexible rather than a stiff stipe. Early kelps were possibly grazed upon by mammals like desmostylians, but fossil evidence of the complex ecological interactions known from extant kelp forests is lacking. The fossil record further indicates that the present-day, multi-story kelp forest had developed at latest after the mid-Miocene climate optimum. In summary, the fossils signify a stepwise evolution of the kelp ecosystem in the North Pacific, likely enabled by changes in the ocean-climate system.

54 ENVIRONMENTAL SCIENCES↗

Contrasting Indian Ocean SST Variability With and Without ENSO Influence: A Coupled Atmosphere-Ocean GCM Study

In this study, we perform experiments with a coupled atmosphere-ocean general circulation model (CGCM) to examine ENSO's influence on the interannual sea surface temperature (SST) variability of the tropical Indian Ocean. The control experiment includes both the Indian and Pacific Oceans in the ocean model component of the CGCM (the Indo-Pacific Run). The anomaly experiment excludes ENSOs influence by including only the Indian Ocean while prescribing monthly-varying climatological SSTs for the Pacific Ocean (the Indian-Ocean Run). In the Indo-Pacific Run, an oscillatory mode of the Indian Ocean SST variability is identified by a multi-channel singular spectral analysis (MSSA). The oscillatory mode comprises two patterns that can be identified with the Indian Ocean Zonal Mode (IOZM) and a basin-wide warming/cooling mode respectively. In the model, the IOZM peaks about 3-5 months after ENSO reaches its maximum intensity. The basin mode peaks 8 months after the IOZM. The timing and associated SST patterns suggests that the IOZM is related to ENSO, and the basin- wide warming/cooling develops as a result of the decay of the IOZM spreading SST anomalies from western Indian Ocean to the eastern Indian Ocean. In contrast, in the Indian-Ocean Run, no oscillatory modes can be identified by the MSSA, even though the Indian Ocean SST variability is characterized by east-west SST contrast patterns similar to the IOZM. In both control and anomaly runs, IOZM-like SST variability appears to be associated with forcings from fluctuations of the Indian monsoon. Our modeling results suggest that the oscillatory feature of the IOZM is primarily forced by ENSO.

Yu, Jin-Yi↗

High Synteny and Sequence Identity between Genomes of Nitrosococcus oceani Strains Isolated from Different Oceanic Gyres Reveals Genome Economization and Autochthonous Clonal Evolution

The ammonia-oxidizing obligate aerobic chemolithoautotrophic gammaproteobacterium, Nitrosococcus oceani, is omnipresent in the world’s oceans and as such important to the global nitrogen cycle. We generated and compared high quality draft genome sequences of N. oceani strains isolated from the Northeast (AFC27) and Southeast (AFC132) Pacific Ocean and the coastal waters near Barbados at the interface between the Caribbean Sea and the North Atlantic Ocean (C-27) with the recently published Draft Genome Sequence of N. oceani Strain NS58 (West Pacific Ocean) and the complete genome sequence of N. oceani C-107, the type strain (ATCC 19707) isolated from the open North Atlantic, with the goal to identify indicators for the evolutionary origin of the species. The genomes of strains C–107, NS58, C-27, and AFC27 were highly conserved in content and synteny, and these four genomes contained one nearly sequence-identical plasmid. The genome of strain AFC132 revealed the presence of genetic inventory unknown from other marine ammonia-oxidizing bacteria such as genes encoding NiFe-hydrogenase and a non-ribosomal peptide synthetase (NRPS)-like siderophore biosynthesis module. Comparative genome analysis in context with the literature suggests that AFC132 represents a metabolically more diverse ancestral lineage to the other strains with C-107 and NS58 potentially being the youngest. The results suggest that the N. oceani species evolved by genome economization characterized by the loss of genes encoding catabolic diversity while acquiring a higher redundancy in inventory dedicated to nitrogen catabolism, both of which could have been facilitated by their rich complements of CRISPR/Cas and Restriction Modification systems.

59 BASIC BIOLOGICAL SCIENCES↗