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Over multi-decadal time scales, assuming that changes in subsurface water storage are negligible, the continental precipitative water flux, P, can be divided into two principal components, Q (run-off, including soil infiltration and groundwater recharge) and ET (evapotranspiration). Taking into account a broadly applied Budyko's phenomenology to describe the relationship of ET/P as a function of PET/P, where PET is the potential evapotranspiration, we propose a theoretical framework for predicting characteristics of the water cycle from scaling relationships. In this framework, the ecosystem net primary productivity is expressed in terms of soil formation and vegetation growth, which is mathematically optimized with respect to the water partitioning, generating directly the value ET/P. Here, the mathematical optimization is based on the general ecological principle that dominant ecosystems tend to be those that, for any given conditions, maximize conversion of atmospheric carbon to biomass. It is shown that application of the results of mathematical optimization to water-limited ecosystems is possible by applying the optimization only to a vegetation covered portion of the surface. For energy-limited ecosystems, the optimization can be applied only to a portion of the precipitation equal to PET, assuming that the remaining P simply runs off. We use theoretical and actual values of plant root fractal dimensionalities, d f , to predict ranges of ET/P as a function of PET/P for 0 ≤ PET/P ≤ 1 and compare with annual and multi-decadal means of ET/P. By comparing the developed approach with a large amount of data collected from the literature, we demonstrate its successful applications to both water- and energy-limited systems.
In recent years, the root microbiome (i.e., microorganisms growing inside, on, or in close proximity to plant roots) has been shown to play an important role in plant health and productivity. Despite its importance, the root microbiome is challenging to study because of its complexity, heterogeneity, and subterranean location. Fortunately, root microbiome research has seen a tremendous influx of novel technologies (e.g., imaging tools, robotics, and molecular analyses), experimental platforms (e.g., micro- and mesocosms), and data integration, modeling, and prediction tools in the past decade that have greatly increased our ability to dissect the complex network of interactions between above- and belowground environmental parameters, plants, bacteria, and fungi that dictate soil and broader ecosystem health. Herein, we discuss methods that are currently used in root microbiome research and that can be expanded to phytobiome research in general ranging from laboratory studies to mesocosm-scale studies and, finally, to field studies; evaluate their relevance to ecosystem studies; and discuss future root microbiome research directions.
Water is the most limiting resource for plant growth and development. Heterogeneity in the environmental distribution of water requires plants to direct root growth toward water and to avoid investing resources in areas that lack water. Roots use hydrosignaling pathways—hydrotropism, hydropatterning, and xerobranching—to sense and respond to water availability. While molecular mechanisms of water perception remain unclear, recent studies suggest that organ-level processes using proxies like ethylene help detect spatial water patterns. This review summarizes advances in hydrosignaling and identifies key knowledge gaps to address how plants sense water. Understanding these processes will guide strategies to improve root water capture for sustainable agriculture.
This archive contains all data and code used by the following publication: Field, J. L., Sloan, B. P., Craig, M. E., Calloway, P., Ottinger, S. L., Mead, T., Abramoff, R. Z., Venegas, M. P., Chhetri, H. B., Haiby, K., Kalluri, U. C., Muchero, W., Schadt, C. W., & Mayes, M. A. (2025). Which plant traits increase soil carbon sequestration? Empirical evidence from a long-term poplar genetic diversity trial (p. 2025.02.17.638464). bioRxiv. https://doi.org/10.1101/2025.02.17.638464 Our analysis combined several soil and root data sets collected by Oak Ridge National Laboratory (ORNL) researchers/collaborators from the Clatskanie Poplar Common Garden in Clatskanie, OR by from 2009-2024. The raw data data files are located */02-data/01-raw/* which we harmonized using the codes in */01-codes/01-harmonize-clatskanie-data-pub.qmd*. The final processed data set used in the paper is found at */02-data/02-processed/clatskanie-c-fit-data.csv* and its columns are described in the table below.
The square root of the product of thermophysical properties q, c and k, where p is density, c is specific heat and k is thermal conductivity, is determined directly on a test specimen such as a wind tunnel model. The test specimen and a reference specimen of known specific heat are positioned at a given distance from a heat source. The specimens are provided with a coating, such as a phase change coating, to visually indicate that a given temperature was reached. A shutter interposed between the heat source and the specimens is opened and a motion picture camera is actuated to provide a time record of the heating step. The temperature of the reference specimen is recorded as a function of time. The heat rate to which both the test and reference specimens were subjected is determined from the temperature time response of the reference specimen by the conventional thin-skin calorimeter equation.
The QR computer program is described as well as its use in classical control systems analysis and synthesis (root locus, time response, and frequency response).
A new, 1-mm-continuum, bolometer detector system has been constructed employing internal adsorption pumping of He-3 to reach an operating temperature close to 0.4 K. The system spectral bandwidth is 800 to 1200 microns. Although the system was originally designed to be used on the 5-m Hale telescope, it has also been successfully used on the 4-m Anglo-Australian telescope and on the 10-m dish at Owens Valley, California. At the 5-m Hale telescope, the system has a full width-half maximum (FWHM) beam size of 55 sec and an instantaneous noise-equivalent flux density of 6 Jy/square root of (Hz)/ in good weather.
In the clinostat environment, Arabidopsis thaliana (L.) Heynh. plants grown in cultures having limited gas exchange with the external atmosphere developed 'above' the agar media a large mass of roots which eventually covered the stem. Cultural conditions were 0.5 rpm, 350 ft.c. from cool white fluorescent lamps, and 25 C. Limited gas exchange culture tubes were covered with Saran Wrap or mylar film, while free gas exchange cultures were plugged with cotton or polyurethane foam. Average shoot-root dry weight ratio of clinostatted, limited gas exchange plants was 3.39 (p less than 0.001) as compared to 10.1 for upright stationary and 10.3 for vertically rotated controls. Average dry weight (48.3 mg) of all clinostatted shoots was greater than those reported by other investigators (15.1 mg). Finally, shoots of the clinostatted plants reported here were almost 2x heavier (p less than 0.01) than the controls (28.7 mg, 26.7 mg), a result contrary to findings of previous investigators, where the clinostatted plants are the lightest (clinostat 15.1 mg, controls 16.5 mg and 17.2 mg).
Carbon-rich plant cell walls contain biopolymers that, with some processing, could replace fossil fuels as a major component of the current petrochemical production. To realize this, biorefineries need to be paired with biomass that during the deconstruction and fractionation processes transforms into the desired products. One component of interest is p-coumarate that, in some species, can account for up to 1% of the biomass’ dry weight. When p-coumarate is present in eudicot cell walls, it is mostly part of the suberin (bark and root), acylates the γ-hydroxy group of the lignin, in part of the tannins, or is a metabolite. The current understanding of eudicot plant cell wall composition is that the lignin is sometimes acylated with acetate and rarely with hydroxycinnamates (p-coumarate or ferulate). This study identified a clear division in the Rosales in which three families produce p-coumaroylated lignins whereas the other six families showed no evidence of the trait.
Recently, nickel phosphides (Ni x P y ) have been reported to enable selective electrochemical formation of multicarbon products (C 3 and C 4 ) via the CO 2 reduction reaction (CO 2 RR); nevertheless, their activities remain low. In order to understand the roots of their high selectivity and low activity and to direct the design of more active Ni x P y -based CO 2 RR catalysts, we investigate the CO 2 RR mechanism on Ni 2 P using density functional theory (DFT) calculations. Iin this work, we reveal that the reaction proceeds through the formate pathway, followed by formaldehyde (H 2 CO*) formation and self-condensation. Moreover, we demonstrate that surface hydride transfer steps, along with surface-mediated C–C coupling, are essential in order to avoid C 1 product formation and boost selectivity toward multicarbon products. In addition, we find that the thermal surface hydride transfer from the surface to the physisorbed CO 2 is one of the key rate-limiting steps, and since it is not electroactive, it cannot be accelerated by applying an overpotential. Finally, our results also show that the hydrogen affinity of the surface and the dynamic surface reconstruction via H adsorption facilitate selective CO 2 reduction and C–C coupling on Ni 2 P. These findings provide an impetus for exploring materials design space to identify the physical principles that govern the thermodynamics of rate-limiting thermal steps in electrocatalytic processes.
Root morphology and soil hydraulic characteristics were integrated using watershed distance mapping to show water distribution and uptake across the plant-soil interface. Poplar (Populus deltoides, P. trichocarpa), maize (Zea mays), juniper (Juniperus virginiana), grape (Vitis rotundifolia) and maple (Acer saccharum) seedlings were grown in sand, after which root diameter and soil water dynamics were assessed via sequential neutron radiography. Three local soil regions (root-soil interface or edge, rhizosphere, bulk soil) were classified based on both radial distance from the root surface and diameter of the nearest root, from which changes in water content and distribution were characterized using digital image processing. Water content dynamics across the rhizosphere showed two different species-independent processes: a consistently elevated water content at the root-soil edge interface which increased with root diameter, and hysteresis as the rhizosphere transitioned to bulk soil (~0.5 cm from the root), independent of root diameter. Water uptake per unit root surface area declined exponentially with root diameter, independent of species. Results highlight the species-independent hydrologic characteristics of the rhizosphere and the potential for evaluating them in a local spatially connected soil context. Avenues for improved integration of soil and root characteristics are discussed.
Axial force was applied to the root tip of corn (Zea mays L. cv. Merit) seedlings using a computerized, feedback-controlled mechanical device. The system's feedback capability allowed continuous control of a constant tip load, and the attached displacement transducer provided the time course of root elongation. Loads up to 7.5 g decreased the root elongation rate by 0.13 mm h-1 g-1, but loads 7.5 to 17.5 g decreased the growth rate by only 0.04 mm h-1 g-1. Loads higher than 18 g stopped root elongation completely. Measurement of the cross-sectional areas of the root tips indicated that the 18 g load had applied about 0.98 MPa of axial pressure to the root, thereby exceeding the root's ability to respond with increased turgor pressure. Recorded time-lapse images of loaded roots showed that radial thickening (swelling) occurred behind the root cap, whose cross-sectional area increased with tip load.
The occurrence and distribution of abscisic acid (ABA), xanthoxin (Xa) and the carotenoid violaxanthin (Va) were investigated in root tips of maize (Zea mays L. cv. Merit). In roots grown in the dark, Va and ABA were present in relatively high amounts in the root cap and in low amounts in the adjacent terminal 1.5 mm of the root. Xanthoxin was present in equal concentrations in both regions. In roots exposed to light, the ABA distribution was reversed, with relatively low levels in the root cap and high levels in the adjacent 1.5-mm segment. Light also caused a decrease in Va in both regions of the root and an increase in Xa, especially in the cap. In the maize cultivar used for this work, light is necessary for gravitropic curving. This response occurs within the same time frame as the light-induced ABA redistribution as well as the changes in the levels of Va and Xa. These data are consistent with a role for ABA in root gravitropism and support the proposal that Xa may arise from the turnover of Va.
The effect of red light on orthogravitropism of Merit corn (Zea mays L.) roots has been attributed to its effects on the transduction phase of gravitropism (AC Leopold, SH Wettlaufer [1988] Plant Physiol 87:803-805). In an effort to characterize the orthogravitropic transduction system, comparative experiments have been carried out on the effects of red light, calcium, and abscisic acid (ABA). The red light effect can be completely satisfied with added ABA (100 micromolar) or with osmotic shock, which is presumed to increase endogenous ABA. The decay of the red light effect is closely paralleled by the decay of the ABA effect. ABA and exogenous calcium show strong additive effects when applied to either Merit or a line of corn which does not require red light for orthogravitropism. Measurements of the ABA content show marked increases in endogenous ABA in the growing region of the roots after red light. The interpretation is offered that red light or ABA may serve to increase the cytoplasmic concentrations of calcium, and that this may be an integral part of orthogravitropic transduction.
Phototropism as well as gravitropism plays a role in the oriented growth of roots in flowering plants. In blue or white light, roots exhibit negative phototropism, but red light induces positive phototropism in Arabidopsis roots. Phytochrome A (phyA) and phyB mediate the positive red-light-based photoresponse in roots since single mutants (and the double phyAB mutant) were severely impaired in this response. In blue-light-based negative phototropism, phyA and phyAB (but not phyB) were inhibited in the response relative to the WT. In root gravitropism, phyB and phyAB (but not phyA) were inhibited in the response compared to the WT. The differences observed in tropistic responses were not due to growth limitations since the growth rates among all the mutants tested were not significantly different from that of the WT. Thus, our study shows that the blue-light and red-light systems interact in roots and that phytochrome plays a key role in plant development by integrating multiple environmental stimuli. c2003 COSPAR. Published by Elsevier Ltd. All rights reserved.
Root anatomy is an important determinant of root metabolic costs, soil exploration, and soil resource capture. Root anatomy varies substantially within and among plant species. RootSlice is a multicellular functional-structural model of root anatomy developed to facilitate the analysis and understanding of root anatomical phenotypes. RootSlice can capture phenotypically accurate root anatomy in three dimensions of different root classes and developmental zones, of both monocotyledonous and dicotyledonous species. Several case studies are presented illustrating the capabilities of the model. For maize nodal roots, the model illustrated the role of vacuole expansion in cell elongation; and confirmed the individual and synergistic role of increasing root cortical aerenchyma and reducing the number of cortical cell files in reducing root metabolic costs. Integration of RootSlice for different root zones as the temporal properties of the nodal roots in the whole-plant and soil model OpenSimRoot/maize enabled the multiscale evaluation of root anatomical phenotypes, highlighting the role of aerenchyma formation in enhancing the utility of cortical cell files for improving plant performance over varying soil nitrogen supply. Such integrative in silico approaches present avenues for exploring the fitness landscape of root anatomical phenotypes.