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ArborX 2.0

ArborX library tackles a problem of efficiently finding geometric objects that are close in space. Variations of this problem, such as finding the nearest neighbors of a point, or finding all objects within a certain distance, are inherent components of applications in many fields. The data may be large so that solving the problem efficiently may require significant computational resources, such as multiple processors or accelerators such as general purpose GPUs. ArborX' main advantage in its ability to solve large problems efficiently utilizing a combination of distributed and on-node parallelism. ArborX can be run efficiently on a wide variety of hardware, including GPUs from different vendors, which distinguishes it from other available libraries which typically choose only few of these. The other advantage is that it supports both types of user problems: spatial problems (useful for intersections and finding objects within certain distance), and nearest neighbor problems. ArborX also supports flexible interface in its interaction with a user. Particularly, it allows a user to call user's own function on a positive match, a functionality not rarely available in other libraries. ArborX implements construction and traversal algorithms using efficient tree structures, such as bounding volume hierarchy (BVH). At its core, ArborX uses linear BVH for its low construction cost and sufficient quality. ArborX implements both spatial and nearest-neighbor traversal algorithms. ArborX also provides several clustering algorithms (minimum spanning tree, DBSCAN, HDBSCAN*), interpolation using minimum least squares and ray tracing. ArborX is written using C++, and is parallelized using the message passing interface (MPI) for the distributed communication, and the Kokkos library for on-node parallelism. This approach allows ArborX to be run on a wide variety of hardware, from common laptops and desktops to supercomputers while using the same codebase.

Prokopenko, Andrey [Oak Ridge National Laboratory ↗

UFNet: Joint U-Net and Fully Connected Neural Network to Bias Correct Precipitation Predictions from

Paper information. Shuang Yu, Indrasis Chakraborty, Gemma J. Anderson, Donald D. Lucas, Yannic Lops, and Daniel Galea. UFNet: Joint U-Net and fully connected neural network to bias correct precipitation predictions from climate models. Artificial Intelligence for the Earth Systems, 2024. Overview. This work develops the UFNet methodology to correct E3SM historical precipitation projection bias. The UFNet deep learning framework consists of a two-part architecture: a U-Net convolutional network to capture the spatiotemporal distribution of precipitation and a fully connected network to capture the distribution of higher-order statistics. The joint network, termed UFNet, can simultaneously improve the spatial structure of the modeled precipitation and capture the distribution of extreme precipitation values. Below we provide guidance for applying UFNet to correct the Energy Exascale Earth System Model (E3SM; Golaz et al. 2019) daily precipitation projection over the contiguous United States (CONUS). Getting started 1. Obtain the historical climate simulation and observation data. The E3SM historical simulation data are available through https://aims2.llnl.gov/search/cmip6/. The CPC unified gauge-based analysis of daily precipitation can be found through https://psl.noaa.gov/data/gridded/data.cpc.globalprecip.html. The ECMWF atmospheric reanalysis of the 20th century (ERA-20C) data are available through https://www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era-20c. The spatial resolution of E3SM and observed datasets are both regridded to a common 1° resolution grid using conservative interpolation. The regridded E3SM, CPC and ERA-20C with 1° resolution can be found throught ./data/. 2. Train the fully connected network (DNN) Python train_dnn.py 3. Train the UFNet Python train_ufnet.py 4. Evaluation and compared with the baseline Python evaluation.py

Lucas, DonaldD↗

Solar physics applications of computer graphics and image processing

Computer graphics devices coupled with computers and carefully developed software provide new opportunities to achieve insight into the geometry and time evolution of scalar, vector, and tensor fields and to extract more information quickly and cheaply from the same image data. Two or more different fields which overlay in space can be calculated from the data (and the physics), then displayed from any perspective, and compared visually. The maximum regions of one field can be compared with the gradients of another. Time changing fields can also be compared. Images can be added, subtracted, transformed, noise filtered, frequency filtered, contrast enhanced, color coded, enlarged, compressed, parameterized, and histogrammed, in whole or section by section. Today it is possible to process multiple digital images to reveal spatial and temporal correlations and cross correlations. Data from different observatories taken at different times can be processed, interpolated, and transformed to a common coordinate system.

Altschuler, M. D.↗

Accuracy of diagnostic heat and moisture budgets using SESAME-79 field data as revealed by observing system simulation experiments

Observing system simulation experiments are used to investigate the accuracy of diagnostic heat and moisture budgets which employ the AVE-SESAME 1979 data. The time-including, four-dimensional data set of a mesoscale model is used to simulate rawinsonde observations from AVE-SESAME 1979. The 5 C/day (heat budget) and 2 g/kg per day (moisture budget) magnitudes of error obtained indicate difficulties in the diagnosis of the heating rate in weak convective systems. The influences exerted by observational frequency, objective analysis, observational density, vertical interpolation, and observational errors on the budget are also studied, and it is found that the temporal and spatial resolution of the SESAME regional network is marginal for diagnosing convective effects on a horizontal time scale of 550 x 550 km.

Kuo, Y.-H.↗

Finite-volume application of high-order ENO schemes to two-dimensional boundary-value problems

Finite-volume applications of high-order accurate ENO schemes to two-dimensional boundary-value problems are studied. These schemes achieve high-order spatial accuracy, in smooth regions, by a piecewise polynomial approximation of the solution from cell averages. In addition, this spatial operation involves an adaptive stencil algorithm in order to avoid the oscillatory behavior that is associated with interpolation across steep gradients. High-order TVD Runge-Kutta methods are employed for time integration, thus making these schemes best suited for unsteady problems. Fifth- and sixth-order accurate applications are validated through a grid refinement study involving the solutions of scalar hyperbolic equations. A previously proposed extension for the Euler equations of gas dynamics is tested, including its application to solutions of boundary-value problems involving solid walls and curvilinear coordinates.

Casper, Jay↗

bifacialVF - Bifacial PV View Factor model [SWR 17-58]

bifacialvf is a self-contained view factor (or configuration factor) model which replicates a 5-row PV system of infinite extent perpendicular to the module rows. Single-axis tracking is supported, and hourly output files based on TMY inputs are saved. Spatial nonuniformity is reported, with multiple rear-facing irradiances collected on the back of each module row. Bilinear interpolation code add-on to bifacialvf (description below) to pre-generate IV arrays and bifacial coefficients, and to examine the energy production with back side irradiance mismatch for either a portrait or landscape module. Included are IV curves and bifacial info for a Yingli (standard) module. Based on the publication: "A Practical Irradiance Model for Bifacial PV Modules" B. Marion, S. MacAlpine, C. Deline, A. Asgharzadeh, F. Toor, D. Riley, J. Stein, C. Hansen 2017 IEEE Photovoltaic Specialists Conference, Washington DC, 2017 URL: https://www.nrel.gov/docs/fy17osti/67847.pdf

Deline, Chris↗

bifacialVF - Bifacial PV View Factor model 2022 [SWR 17-58]

bifacialvf is a self-contained view factor (or configuration factor) model which replicates a 5-row PV system of infinite extent perpendicular to the module rows. Single-axis tracking is supported, and hourly output files based on TMY inputs are saved. Spatial nonuniformity is reported, with multiple rear-facing irradiances collected on the back of each module row. Bilinear interpolation code add-on to bifacialvf (description below) to pre-generate IV arrays and bifacial coefficients, and to examine the energy production with back side irradiance mismatch for either a portrait or landscape module. Included are IV curves and bifacial info for a Yingli (standard) module. Based on the publication: "A Practical Irradiance Model for Bifacial PV Modules" B. Marion, S. MacAlpine, C. Deline, A. Asgharzadeh, F. Toor, D. Riley, J. Stein, C. Hansen 2017 IEEE Photovoltaic Specialists Conference, Washington DC, 2017 URL: https://www.nrel.gov/docs/fy17osti/67847.pdf

Deline, Chris↗

Deep Learning-based Non-Stationary Bias Correction (NSBC)

This work develops the NSBC (non-stationary bias correction) methodology to correct temperature projection bias from E3SM. The NSBC deep learning framework consists of a three-part architecture: an auto-encoder for compressing the spatial information, an LSTM for predicting annual temperature mean, and a U-Net for capturing the residual bias in temperature. The non-stationary bias correction (NSBC) framework can correct the non-stationarity of the biases of the climate models, which significantly improves the accuracy of future temperature prediction and improves the overestimation of extreme high temperatures that many existing bias correction methods suffer from. Getting started 1. Obtain the historical climate simulation and observation data. The E3SM simulation data are available through https://aims2.llnl.gov/search/cmip6/. The pseudo observations, the Geophysical Fluid Dynamics Laboratory (GFDL)-ESM4 model (Krasting et al., 2018) are available through https://aims2.llnl.gov/search/cmip6/. The spatial resolution of E3SM and pseudo observation datasets are both regridded to a common 1° resolution grid using conservative interpolation. The regridded E3SM and pseudo observation with 1° resolution can be found throught ./data/. 2. Train the Auto-encoder model. Python 0-autoencoder.py 3. Train the LSTM Python 1-LSTM.py 4. Generate the annual mean temperature based on trained LSTM Python 2-generate_annual_mean_LSTM.py 5. Train the U-Net. Python 3-unet.py 6. Evaluation and compared with the baseline Python 4_evaluation.py Is there a deadline approaching that requires the release of yo

Lucas, Donald↗

Enhancing control of grid distribution in algebraic grid generation

Three techniques are presented to enhance the control of grid-point distribution for a class of algebraic grid generation methods known as the two-, four- and six-boundary methods. First, multidimensional stretching functions are presented, and a technique is devised to construct them based on the desired distribution of grid points along certain boundaries. Second, a normalization procedure is proposed which allows more effective control over orthogonality of grid lines at boundaries and curvature of grid lines near boundaries. And third, interpolating functions based on tension splines are introduced to control curvature of grid lines in the interior of the spatial domain. In addition to these three techniques, consistency conditions are derived which must be satisfied by all user-specified data employed in the grid generation process to control grid-point distribution. The usefulness of the techniques developed in this study was demonstrated by using them in conjunction with the two- and four-boundary methods to generate several grid systems, including a three-dimensional grid system in the coolant passage of a radial turbine blade with serpentine channels and pin fins.

Steinthorsson, E.↗

Data Reduction Pipeline for the CHARIS Integral-Field Spectrograph I: Detector Readout Calibration and Data Cube Extraction

We present the data reduction pipeline for CHARIS, a high-contrast integral-field spectrograph for the Subaru Telescope. The pipeline constructs a ramp from the raw reads using the measured nonlinear pixel response and reconstructs the data cube using one of three extraction algorithms: aperture photometry, optimal extraction, or chi-squared fitting. We measure and apply both a detector flatfield and a lenslet flatfield and reconstruct the wavelength- and position-dependent lenslet point-spread function (PSF) from images taken with a tunable laser. We use these measured PSFs to implement a chi-squared-based extraction of the data cube, with typical residuals of approximately 5 percent due to imperfect models of the under-sampled lenslet PSFs. The full two-dimensional residual of the chi-squared extraction allows us to model and remove correlated read noise, dramatically improving CHARIS's performance. The chi-squared extraction produces a data cube that has been deconvolved with the line-spread function and never performs any interpolations of either the data or the individual lenslet spectra. The extracted data cube also includes uncertainties for each spatial and spectral measurement. CHARIS's software is parallelized, written in Python and Cython, and freely available on github with a separate documentation page. Astrometric and spectrophotometric calibrations of the data cubes and PSF subtraction will be treated in a forthcoming paper.

Brandt, Timothy D.↗

Spatial characteristics of observed precipitation fields: A catalog of summer storms in Arizona, Volume 1

Eight years of summer raingage observations are analyzed for a dense, 93 gage, network operated by the U. S. Department of Agriculture, Agricultural Research Service, in their 150 sq km Walnut Gulch catchment near Tucson, Arizona. Storms are defined by the total depths collected at each raingage during the noon to noon period for which there was depth recorded at any of the gages. For each of the resulting 428 storms, the 93 gage depths are interpolated onto a dense grid and the resulting random field is anlyzed. Presented are: storm depth isohyets at 2 mm contour intervals, first three moments of point storm depth, spatial correlation function, spatial variance function, and the spatial distribution of total rainstorm depth.

Fennessey, N. M.↗

Edge detection - Image-plane versus digital processing

To optimize edge detection with the familiar Laplacian-of-Gaussian operator, it has become common to implement this operator with a large digital convolution mask followed by some interpolation of the processed data to determine the zero crossings that locate edges. It is generally recognized that this large mask causes substantial blurring of fine detail. It is shown that the spatial detail can be improved by a factor of about four with either the Wiener-Laplacian-of-Gaussian filter or an image-plane processor. The Wiener-Laplacian-of-Gaussian filter minimizes the image-gathering degradations if the scene statistics are at least approximately known and also serves as an interpolator to determine the desired zero crossings directly. The image-plane processor forms the Laplacian-of-Gaussian response by properly combining the optical design of the image-gathering system with a minimal three-by-three lateral-inhibitory processing mask. This approach, which is suggested by Marr's model of early processing in human vision, also reduces data processing by about two orders of magnitude and data transmission by up to an order of magnitude.

Huck, Friedrich O.↗

Numerical Method for Fractional Advection-Diffusion Equation with Heredity

We propose a method of construction of difference schemes for fractional partial differential equations with delay in time. For the fractional equation with two-sided diffusion, fractional transfer in time, and a functional aftereffect, we construct an implicit difference scheme. We use the shifted Grünwald–Letnikov formulas for the approximation of fractional derivatives with respect to spatial variables and the L1-algorithm for the approximation of fractional derivatives in time. Also we use piecewise constant interpolation and extrapolation by extending the discrete prehistory of the model in time. The algorithm is a fractional analog of a purely implicit method; on each time step, it is reduced to the solution of linear algebraic systems. We prove the stability of the method and find its order of convergence.

97 MATHEMATICS AND COMPUTING↗

Concept for the subresolution measurement of earthquake strain fields using SPOT panchromatic imagery

The use of satellite-derived imagery for measuring subresolution horizontal terrain displacments associated with present-day earthquakes is discussed with reference to data from the French SPOT satellite whose sensor array provides 10-m panchromatic imagery. The measured terrain displacements can be up to several meters, but usually no more than 6-8 m even for major earthquakes. The general approach is to spatially match the after image to the before image at each point on a half-kilometer grid by iteratively interpolating one and testing its correlation with the other. The discussion covers the basic algorithm, results of initial tests, error types and limitations, and future work.

Crippen, Robert E.↗

Issues in Data Fusion for Satellite Aerosol Measurements for Applications with GIOVANNI System at NASA GES DISC

We look at issues, barriers and approaches for Data Fusion of satellite aerosol data as available from the GES DISC GIOVANNI Web Service. Daily Global Maps of AOT from a single satellite sensor alone contain gaps that arise due to various sources (sun glint regions, clouds, orbital swath gaps at low latitudes, bright underlying surfaces etc.). The goal is to develop a fast, accurate and efficient method to improve the spatial coverage of the Daily AOT data to facilitate comparisons with Global Models. Data Fusion may be supplemented by Optimal Interpolation (OI) as needed.

Gopalan, Arun↗

Development of Multi-Sensor Global Cloud and Radiance Composites for DSCOVR EPIC Imager with Subpixel Definition

The Deep Space Climate Observatory (DSCOVR) enables analysis of the daytime Earth radiation budget via the onboard Earth Polychromatic Imaging Camera (EPIC) and National Institute of Standards and Technology Advanced Radiometer (NISTAR). EPIC delivers adequate spatial resolution imagery but only in shortwave bands (317-780 nm), while NISTAR measures the top-of-atmosphere (TOA) whole-disk radiance in shortwave and longwave broadband windows. Accurate calculation of albedo and outgoing longwave flux requires a high-resolution scene identification such as the radiance observations and cloud properties retrievals from low earth orbit (LEO, including NASA Terra and Aqua MODIS, Suomi-NPP VIIRS, and NOAA AVHRR) and geosynchronous (GEO, including GOES east and west, METEOSAT, INSAT-3D, MTSAT-2, and Himawari-8) satellite imagers. The cloud properties are derived using the Clouds and the Earth's Radiant Energy System (CERES) mission Cloud Subsystem group algorithms. These properties have to be co-located with EPIC pixels to provide the scene identification and to select anisotropic directional models (ADMs), which are then used to adjust the NISTAR-measured radiance and subsequently obtain the global daytime shortwave and longwave fluxes. This work presents an algorithm for optimal merging of selected radiance and cloud property parameters derived from multiple satellite imagers to obtain seamless global hourly composites at 5-km resolution. Selection of satellite data for each 5-km pixel is based on an aggregated rating that incorporates five parameters: nominal satellite resolution, pixel time relative to the EPIC time, viewing zenith angle, distance from day/night terminator, and probability of sun glint. To provide a smoother transition in the merged output, in regions where candidate pixel data from two satellite sources have comparable aggregated rating, the selection decision is defined by the cumulative function of the normal distribution so that abrupt changes in the visual appearance of the composite data are avoided. Higher spatial accuracy in the composite product is achieved by using the inverse mapping with gradient search during reprojection and bicubic interpolation for pixel resampling.

Khlopenkov, Konstantin V.↗

Influence of strain and dislocations on GaSb/GaAs quantum dots: From nested to staggered band alignment

We investigate the influence of strain and dislocations on band alignment in GaSb/GaAs quantum dot systems. Composition profiles from cross-sectional scanning tunneling microscopy images are interpolated onto a finite element mesh in order to calculate the distribution of local elastic strain, which is converted to a spatially varying band alignment using deformation potential theory. Our calculations predict that dislocation-induced strain relaxation and charging lead to significant local variations in band alignment. Furthermore, misfit strain induces a transition from a nested (type I) to a staggered (type II) band alignment. Although dislocation-induced strain relaxation prevents the type I to type II transition, electrostatic charging at dislocations induces the staggered band alignment once again.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

CICE on a C-grid: new momentum, stress, and transport schemes for CICEv6.5

Abstract. This article presents the C-grid implementation of the CICE sea ice model, including the C-grid discretization of the momentum equation, the boundary conditions (BCs), and the modifications to the code required to use the incremental remapping transport scheme. To validate the new C-grid implementation, many numerical experiments were conducted and compared to the B-grid solutions. In idealized experiments, the standard advection method (incremental remapping with C-grid velocities interpolated to the cell corners) leads to a checkerboard pattern. A modal analysis demonstrates that this computational noise originates from the spatial averaging of C-grid velocities at corners. The checkerboard pattern can be eliminated by adjusting the departure regions to match the divergence obtained from the solution of the momentum equation. We refer to this novel approach as the edge flux adjustment (EFA) method. The C-grid discretization with edge flux adjustment allows for transport in channels that are one grid cell wide – a capability that is not possible with the B-grid discretization nor with the C-grid and standard remapping advection. Simulation results match the predicted values of a novel analytical solution for one-grid-cell-wide channels.

Lemieux, Jean-François (ORCID:0000000320845759)↗