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NASA NTRS2020

Prokaryotic and Fungal Characterization of the Facilities Used to Assemble, Test, and Launch the OSIRIS-REx Spacecraft

To characterize the ATLO (Assembly, Test, and Launch Operations) environment of the OSIRIS-REx spacecraft, we analyzed 17 aluminum witness foils and two blanks for bacterial, archaeal, fungal, and arthropod DNA. Under NASA’s Planetary Protection guidelines, OSIRIS-REx is a Category II outbound, Category V unrestricted sample return mission. As a result, it has no bioburden restrictions. However, the mission does have strict organic contamination requirements to achieve its primary objective of returning pristine carbonaceous asteroid regolith to Earth. Its target, near-Earth asteroid (101955) Bennu, is likely to contain organic compounds that are biologically available. Therefore, it is useful to understand what organisms were present during ATLO as part of the larger contamination knowledge effort—even though it is unlikely that any of the organisms will survive the multi-year deep space journey. Even though these samples of opportunity were not collected or preserved for DNA analysis, we successfully amplified bacterial and archaeal DNA (16S rRNA gene) from 16 of the 17 witness foils containing as few as 7 ± 3 cells per sample. Fungal DNA (ITS1) was detected in 12 of the 17 witness foils. Despite observing arthropods in some of the ATLO facilities, arthropod DNA (COI gene) was not detected. We observed 1,009 bacterial and archaeal sOTUs (sub-operational taxonomic units, 100% unique) and 167 fungal sOTUs across all of our samples (25–84 sOTUs per sample). The most abundant bacterial sOTU belonged to the genus Bacillus. This sOTU was present in blanks and may represent contamination during sample handling or storage. The sample collected from inside the fairing just prior to launch contained several unique bacterial and fungal sOTUs that describe previously uncharacterized potential for contamination during the final phase of ATLO. Additionally, fungal richness (number of sOTUs) negatively correlates with the number of carbon-bearing particles detected on samples. The total number of fungal sequences positively correlates with total amino acid concentration. These results demonstrate that it is possible to use samples of opportunity to characterize the microbiology of low-biomass environments while also revealing the limitations imposed by sample collection and preservation methods not specifically designed with biology in mind.

Aaron B. Regberg↗

NASA NTRS2022

Adaptations of Endolithic Communities to Abrupt Environmental Changes in A Hyper-Arid Desert

The adaptation mechanisms of microbial communities to natural perturbations remain relatively unexplored, particularly in extreme environments. The extremophilic communities of halite (NaCl) nodules from the hyper-arid core of the Atacama Desert are self-sustained and represent a unique opportunity to study functional adaptations and community dynamics with changing environmental conditions. We transplanted halite nodules to different sites in the desert and investigated how their taxonomic, cellular, and biochemical changes correlated with water availability, using environmental data modeling and metagenomic analyses. Salt-in strategists, mainly represented by haloarchaea, significantly increased in relative abundance at sites characterized by extreme dryness, multiple wet/dry cycles, and colder conditions. The functional analysis of metagenome-assembled genomes (MAGs) revealed site-specific enrichments in archaeal MAGs encoding for the uptake of various compatible solutes and for glycerol utilization. These findings suggest that opportunistic salt-in strategists took over the halite communities at the driest sites. They most likely benefited from metabolites newly released in the environment by the death of microorganisms least adapted to the new conditions. The observed changes were consistent with the need to maximize cellular bioenergetics when confronted with lower water availability and higher salinity, providing valuable information on microbial community adaptations and resilience to climate change.

Atacama↗

NASA NTRSDate not supplied

The BioMole Facility: Advancement of In Situ Microbiome Analysis for the International Space Station

Characterization of the International Space Station (ISS) microbiome has been enabled by sample return and Earth-based analysis. As human exploration pushes beyond low-Earth orbit, microbial-related crew health, planetary protection, and space research requires in situ capabilities. Steps toward reducing Earth-dependence for complex sample analysis began in 2016 with the amplification of DNA within the miniPCR thermal cycler and DNA sequencing with the MinION sequencer onboard the ISS; for both, samples were prepared on Earth. In 2017, these platforms synergistically enabled the in-situ identification of unknown bacteria collected and cultured from ISS surfaces, thereby shifting the paradigm that microbial cultures had to be returned to Earth. The following year, a culture-independent, swab-to-sequencer method further advanced spaceflight microbiology, demonstrating that culturing could be excluded and provided enhanced insight into the bacterial profile of ISS surfaces. Based on the success of these payloads in confirming the ability to meet crew health identification requirements and the benefits accompanying a culture-independent method, the BioMole Facility was established by the medical operations Crew Health Care Systems team. BioMole is the set of hardware, consumables, and procedures required to support sample preparation and nanopore sequencing onboard the ISS. BioMole goals include expanding sample sources, comparing data to previous methods, demonstrating onboard data analytics, and validating new hardware. To date, comparative surface analysis, molecular- and culture-based, has been completed. Additionally, the demonstration of a sample-to-answer process was achieved when BioMole data was processed onboard using the IBM Open Data and AI Edge software platform installed on the ISS-residing Spaceborne Computer-2. The taxonomic profiles generated from the edge analysis were as expected and paralleled that of the downlinked processed data. Future BioMole efforts involve microbial profiling of the ISS water system, ISS validation of the MinION Mk1C, and an expansion to a research facility available to investigators.

Sarah L. Castro-Wallace↗

NASA NTRSDate not supplied

Culture-Independent Fungal Profiling for the International Space Station using Nanopore Sequencing: Method Development

Microbial monitoring of the International Space Station (ISS) environment is a crew health requirement that encompasses both bacterial and fungal identification. To achieve this currently, culture-based methods are used for sample collection, and these samples must be returned to the laboratory for analysis. The use of culture and the need for sample return to Earth results in a bias toward culturable organisms and causes a significant delay between sample collection and delivery of final data (weeks to months), respectively. Recently, advancements in molecular technology have aided a broad range of applications, including medical, industrial, and basic sciences. Additionally, increases in portability and ease-of-use of molecular platforms have provided point-of-use capabilities demonstrated by the miniPCR thermal cycler (miniPCR bio) and the MinION sequencer (Oxford Nanopore Technologies). Together, these devices have been applied to, and validated for, the identification of bacteria onboard the ISS. Building on this work, we have developed a spaceflight-compatible fungal workflow. Molecular-based fungal analysis is complicated by low biomass, difficult-to-lyse spores, debate regarding the region for taxonomic assignment, and the lack of bioinformatic pipelines and reference databases. To overcome these difficulties, primers yielding an ~ 2 Kb amplicon were validated against a wide range of ISS fungal isolates. The current spaceflight library preparation was substantially optimized, a bioinformatic pipeline was created, and refinements to the UNITE database were implemented. To compare this optimized method to the current culture-based standard, 30 sample sets (60 total swabs, two swabs held in tandem) were evaluated. Parallel fungal profiles were obtained between the two methods, with the culture-independent method revealing increased diversity. The addition of this method to the already established bacterial process fulfills the crew health identification requirement. Moreover, the implementation of this method onboard ISS will enhance our understanding of its unique fungal microbiome.

Hang N. Nguyen↗

NASA NTRS2022

Herbarium records provide reliable phenology estimates in the understudied tropics

1. Plant phenology has been shifting dramatically in response to climate change, a shift that may have significant and widespread ecological consequences. Of particular concern are tropical biomes, which represent the most biodiverse and imperilled regions of the world. However, compared to temperate floras, we know little about phenological responses of tropical plants because long-term observational datasets from the tropics are sparse. 2. Herbarium specimens have greatly increased our phenological knowledge in temperate regions, but similar data have been underutilized in the tropics and their suitability for this purpose has not been broadly validated. Here, we compare phenological estimates derived from field observational data (i.e. plot surveys) and herbarium specimens at various spatial and taxonomic scales to determine whether specimens can provide accurate estimations of reproductive timing and its spatial variation. 3. Here, we demonstrate that phenological estimates from field observations and herbarium specimens coincide well. Fewer than 5% of the species exhibited significant differences between flowering periods inferred from field observations versus specimens regardless of spatial aggregation. In contrast to studies based on field records, herbarium specimens sampled much larger geographic and climatic ranges, as has been documented previously for temperate plants, and effectively captured phenological responses across varied environments. 4. Synthesis. Herbarium specimens are verified to be a vital resource for closing the gap in our phenological knowledge of tropical systems. Tropical plant reproductive phenology inferred from herbarium records is widely congruent with field observations, suggesting that they can and should be used to investigate phenological variation and their associated environmental cues more broadly across tropical biomes.

Brazil↗

NASA NTRSDate not supplied

Hayabusa2#’s Exploration to Asteroids 2001 CC21 and 1998 KY26 Provides Key Insights Into Planetary Defense

The Hayabusa2 extended mission, nicknamed Hayabusa2# (SHARP: Small Hazardous Asteroid Reconnaissance Probe), started its mission after the Hayabusa2 spacecraft successfully returned in December 2020 to the Earth with Ryugu's samples and released the Sample Return Capsule containing it. Hayabusa2#’s key operations include flying by Near Earth Asteroid (98943) 2001 CC21 and rendezvousing with Near-Earth Asteroid 1998 KY26. The flyby is planned to be in 2026, and the rendezvous will be in 2031. Detailed investigations of these targets enable maturing key knowledge and technologies necessary for planetary defense. This paper reviews the characteristics of these targets and strategies to maximize outcomes from the mission. The spacecraft will fly by 2001 CC21 at a speed of ~5 km/s in 2026. Given constraints on the spacecraft condition, not designed to perform a flyby operation, operational plans require careful assessments to maximize the proximity observations of this asteroid. The ~700 m diameter asteroid's shape is currently unknown, though lightcurve observations suggest the asteroid is elongated. While the spin pole is not constrained well, the spin period is about 5.02 h with uncertainties of 0.01 h [1]. The taxonomic class may be L-type, which implies the presence of Calcium-aluminum-rich inclusions (CAI), one of the primitive materials in the solar system [2], although there are studies suggesting an S-type. Therefore, this must be carefully examined. Photometric and spectroscopic observations will strongly constrain this asteroid’s properties. Our rendezvous target, 1998 KY26, is a ~30 m diameter roundish object spinning at a spin period of 10.7 min, which may represent one of the common groups of Near Earth Asteroids in size and composition that give a higher likelihood of threatening the Earth. Radar and optical observations reconstructed this asteroid's shape with high uncertainties and inferred that its surface composition might be similar to that of carbonaceous asteroids [3]. No spacecraft has ever visited such small bodies. Hayabusa2# visiting 1998 KY26 will be the first mission to document its geophysical properties, offering strong insights into what most frequent invaders look like [4].

Hayabusa2#↗

NASA NTRS2023

Oxygenation of the Baltoscandian shelf linked to Ordovician biodiversification

Marine biodiversity increased markedly during the Ordovician Period (~487–443 million years ago). Some intervals within the Ordovician were associated with unusually rapid and prominent rises in taxonomic richness, the reasons for which remain debated. Links between increased oxygenation and biodiversifcation have been proposed, although supporting marine oxygen proxy data are limited. Here we present an expansive multi-site iodine-to-calcium (I/Ca) record from Lower–Middle Ordovician marine carbonates in Baltoscandia that provides a detailed account of the spatio-temporal development of oxygen conditions across this palaeoshelf. The data document progressive oxygenation of regional seafoor environments, with well-oxygenated waters sourced from the palaeoequatorward Iapetus Ocean and peak I/Ca values (that is, dissolved oxygen concentrations) coinciding with the most pronounced biodiversity increases and ecosystem reorganizations during this time interval. This occurred while the climate cooled, global sea level dropped and carbonate deposits became regionally dominant. The results suggest that ventilation of shelves played a critical role in regulating early Palaeozoic marine biodiversity via development of ecospace and aerobic–metabolic conditions.

Anders Lindskog↗

NASA NTRS2026

Physical Parameters of Space Mission Asteroid Targets

Ground-based characterization of asteroids that are planned or potential targets of space missions provides important data on their physical parameters and properties. Knowledge of the properties of mission targets is important especially during mission preparation and planning, as it serves to select best or suitable targets for specific purpose of a given mission, to prepare mission plans, to constrain possible mission scenarios, and to design mission experiments. Such characterization efforts may be particularly critical for flyby missions that take only limited data during the high-speed flybys of their target asteroids, but they also provide very crucial data for targets of rendezvous missions. Moreover, long-term observations taken from Earth also allows the modelling of, or constraining, processes acting on the asteroids over extended time scales. Over the past years and decades we have obtained rich data on physical parameters of 82 asteroids that are planned or potential targets of space missions. Our primary observing technique is time-resolved (lightcurve) photometry, but we use also data obtained with other techniques, such as spectroscopy, thermal or radar observations. 15 of the 82 characterized asteroids are planned or possible targets of several space missions that are in flight or preparation, such as ESA’s Hera, RAMSES and PRIAMOS, NASA’s OSIRIS-APEX, JAXA’s Hayabusa2#, DESTINY+ and Next Generation Sample Return (NGSR), the Emirates Mission to Asteroids (EMA), and Karman+’s High Frontier, but we have also characterized 67 asteroids that are potential targets of space missions for their low delta-V’s and were announced as being “of interest to NASA” in the Small-Bodies-Observations- NASA mailing list or listed on the NHATS page of “Accessible NEAs”. The sample of asteroid targets span 3 orders of magnitude in size, with absolute magnitudes H from 12.57 to 26.8, corresponding to diameters from about 10 m to about 10 km. The sample contains a variety of taxonomic types and physically or dynamically interesting objects. Among them, we have identified 5 binary asteroids and 20 tumblers (i.e., asteroids in excited, non-principal axis rotation states). Rotation periods of the characterized asteroids range from 1.45 min to 280 h, reflecting diversity of their properties and formation/evolution paths. We will present an overview of the data set and highlight several representative cases.

Petr Pravec↗