Low Power Instrumentation for Measurement of Greenhouse Gas Emissions in Terrestrial-Aquatic Interfaces
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54 ENVIRONMENTAL SCIENCES↗
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High Performance Graphene Sensor for In-situ Determination of Aquatic Phosphorus
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Wang, Qingwu↗
A Low Cost and Rugged Graphene Sensor Network for Characterizing Phosphorus Levels Across Terrestrial-Aquatic Interfaces Final Report
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Anibal, Jacob↗
INTEGRATED CURRENT-WAVE HYDROKINETIC ENERGY HARVESTER FOR COMMUNITY RESILIENCE AND BENEFITS TO AQUATIC FAUNA
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CURRENT↗
Hybridization capture sequencing for Vibrio spp. and associated virulence factors
ABSTRACT Proliferation ofVibriospp. in aquatic ecosystems is associated with climate change and, concomitantly, increased incidence of vibriosis. They are autochthonous to aquatic environments globally, but traditional metagenomic methods for detecting and typing pathogenicVibriospp. are challenged by their presence in relatively low abundance and ability to persist in a viable but nonculturable state. In the study reported here, hybridization capture sequencing (HCS) was employed to profile low-abundanceVibriospp. in environmental samples. The HCS panel targeted a family of molecular chaperones (CPN60) specific to 69Vibriospp. and 162Vibrio-specific virulence factors. This approach was evaluated in parallel with traditional whole-community shotgun sequencing in a metagenomic analysis of water and oyster samples collected from the Chesapeake Bay. In addition,Vibrio parahaemolyticusandVibrio vulnificusstrains isolated from the samples were subjected to whole-genome sequencing to determine the genetic characteristics of pathogenicVibriospp. circulating in an aquatic environment. HCS, employed to determine the incidence and characterization of specificVibriospp., yielded significantly greater metagenomic insight, notably a variety of otherVibriospp., including detection ofVibrio cholerae,Vibrio fluvialis, andVibrio aestuarianus, in addition toVibrio parahaemolyticusandVibrio vulnificus, and also important virulence factors not detectable using traditional molecular methods. Thus, pathogenicVibriospp. in aquatic ecosystems may be far more common than currently understood. It is concluded that environmental surveillance should include HCS, a valuable tool for the detection and characterization of pathogenic agents in aquatic ecosystems, notably vibrios. IMPORTANCE The increasing prevalence of pathogenicVibriospp. in aquatic ecosystems, driven by climate change, is closely linked to a rise in cholera and vibriosis cases, emphasizing the need for improved environmental surveillance. Vibrios are naturally occurring in aquatic environments globally, but traditional metagenomic methods for detecting and typing pathogenicVibriospp. are challenged by their presence in relatively low abundance and ability to persist in a viable but nonculturable state. In the study reported here, hybridization capture sequencing was employed to profile low-abundanceVibriospp. in metagenomic samples, namely water and oysters collected from the Chesapeake Bay. This approach was evaluated in parallel with traditional whole-community shotgun sequencing and whole-genome sequencing ofVibrio parahaemolyticusandVibrio vulnificusstrains isolated from the samples. Results suggest pathogenicVibriospp. in aquatic ecosystems may be far more common than currently understood, when multiple methods are considered for environmental surveillance.
Microbiology↗
Using Remote Sensing to Assess of Growth and Distribution for Floating Invasive Plants and Growth Response Times to Altered Environments
Management of aquatic weeds in complex watersheds and river systems present many challenges to assessment, planning and implementation of management practices for aquatic invasive plants. The Delta Region Areawide Aquatic Weed Project (DRAAWP), a USDA (U. S. Dept. of Agriculture)-sponsored area-wide project, is working to enhance planning, decision-making and operational efficiency of invasive plant management in the California Sacramento-San Joaquin Delta. Satellite and airborne remote sensing are used to map area of plant coverage and estimate biomass density to aid operations and assess management impacts on plant communities. Modeling at local and watershed scales using the SWAT (Soil Water Assessment Tool) modeling tool provides insight into land-use effects on water quality. Environmental variability in the Delta occurs across a range of time scales from long-term climate and seasonal trends to short-term water flow mediated variations. Controlled environment growth studies have been conducted to quantify the growth response of invasive aquatic plants to water quality and other environmental factors. Response time for invasive species response are examined at time scales of weeks, day, and hours using a combination of study duration and growth assessment techniques to assess water quality, temperature (air and water), and light effects. These provide response parameters for plant growth models in response to environmental variation and interact with management and economic models associated with aquatic weed management. Plant growth models are to be informed by remote sensing and applied spatially across the Delta to balance location and type of aquatic plant, growth response to altered environments and phenology. Initial utilization of remote sensing tools developed for mapping of aquatic invasive plants improved operational efficiency in management practices. These assessment methods provide a comprehensive and quantitative view of aquatic invasive plant communities in the California Delta.
Floating↗
Growth Response of Water Hyacinth to Environmental Ranges in the California Sacramento-San Joaquin River Delta
Management of aquatic weeds in complex watersheds and river systems present many challenges to assessment, planning, and implementation of management for aquatic invasive plants. The Delta Region Areawide Aquatic Weed Project (DRAAWP), a USDA sponsored area-wide project including NASA Ames Research Center and State of California Department of Boating and Waterways, is working to enhance decision-making and operational efficiency of invasive plant management in the California Sacramento-San Joaquin Delta. Expansion of invasive aquatic plants has been detrimental to water management and the ecosystem complex in the San Francisco Bay/California Delta. The portion of DRAAWP reported here focuses on parametrizing the environmental response inputs for the Delta models for prominent invasive aquatic plants. Changing climate, long-term drought, shifts in land use, and variation in water flow and quality from input watersheds lead to wide and unique variation in environmental conditions. Environmental variability occurs across a range of time scales from long-term climate and seasonal trends to short-term water flow mediated variations. Response of invasive aquatic plants are examined using controlled environment growth facilities at time scales of weeks, day, and hours using a combination of study duration and growth assessment techniques to assess water quality, temperature, nutrient, and light effects. These provide response parameters for plant growth models in response to the variation and interact with management and economic models associated with aquatic weed management. Plant growth models are informed by remote sensing and applied spatially across the Delta to balance location and type of aquatic plant, growth response to altered environments and phenology.
Sacramento-San Joaquin River Delta.v↗
Environmental fate of radiocesium in biota inhabiting a contaminated ecosystem on the U.S. Department of Energy's Savannah River Site
Although biomagnification of radiocesium ( 137 Cs) has been reported in food webs, most previous research has been limited to select trophic linkages. Few studies have included a comprehensive survey of fauna associated with aquatic, semi-aquatic, and terrestrial habitats within a single study framework. The objectives of this study were to advance our understanding of the dynamics of 137 Cs accumulation within food webs by quantifying 137 Cs activity across a wide range of biota found within a contaminated canal, as well as test the hypothesis that life-stage and body size influence 137 Cs bioaccumulation in select herpetofauna. With extensive sampling across multiple taxa collected from a contaminated canal system and associated floodplain on the Savannah River Site, we assessed 137 Cs activity and stable nitrogen isotopes for both aquatic organisms that were restricted to the contaminated effluent canal, and semi-aquatic organisms able to move freely between the contaminated canal and the adjacent uncontaminated terrestrial habitat. We found 137 Cs activity to be highly variable among species, with evidence for and against biomagnification in semi-aquatic and aquatic organisms, respectively. Furthermore, 137 Cs activity decreased with life stage and body size in bullfrogs (Lithobates catesbeianus), despite post-metamorphic bullfrogs having a more carnivorous diet compared to tadpoles, while cottonmouths (Agkistrodon piscivorus) retained similar 137 Cs activity regardless of their age and size. While evidence of biomagnification has been observed in some contaminated systems, results of our study suggest the extent to which 137 Cs biomagnifies within food webs is context-dependent and likely influenced by a suite of biotic and abiotic factors. Further, our data indicate sampling of a broad suite of species and environmental attributes are needed to elucidate the fate and dynamics of anthropogenic pollutants within contaminated ecosystems.
54 ENVIRONMENTAL SCIENCES↗
Use Attainability Analysis for Upper Sandia Canyon
This document presents a use attainability analysis (UAA) for the perennial segment of Upper Sandia Canyon, which is located within the Los Alamos National Laboratory (LANL) property near Los Alamos, New Mexico.1 This UAA is consistent with 20.6.4.15 New Mexico Administrative Code (NMAC) (New Mexico Environment Department [NMED] 2011c), which describes the perennial segment as “Sandia Canyon from Sigma Canyon upstream to LANL [National Pollutant Discharge Elimination System] NPDES outfall 001.” The perennial segment’s designated uses are coldwater aquatic life, livestock watering, wildlife habitat, and secondary contact. 40 Code of Federal Regulations (CFR) § 131.10(g) permits a state to remove a designated use that is not an existing use (as defined in 40 CFR §131.3), if a UAA demonstrates that naturally occurring pollutant concentrations prevent the attainment of the use or if physical conditions related to the natural features of the water body preclude the attainment of the aquatic life protection use. This UAA considers whether natural physical conditions in Upper Sandia Canyon, specifically air and/or water temperatures, prevent the designated aquatic life use water temperature limits (i.e., coldwater) from being attained in the perennial segment. The weight of evidence presented in this UAA supports the conclusion that, based on air-water temperature modeling and instream thermograph data, the coolwater aquatic life designated use is currently the attainable use. Accordingly, it is recommended that the coolwater aquatic life designated use replace the coldwater aquatic life designated use in the Upper Sandia Canyon assessment unit (AU).
54 ENVIRONMENTAL SCIENCES↗
Algal Accessory Pigment Detection Using AVIRIS Image-Derived Spectral Radiance Data
Visual and derivative analyses of AVIRIS spectral data can be used to detect algal accessory pigments in aquatic communities. This capability extends the use of remote sensing for the study of aquatic ecosystems by allowing detection of taxonomically significant pigment signatures which yield information about the type of algae present. Such information allows remote sensing-based assessment of aquatic ecosystem health, as in the detection of nuisance blooms of cyanobacteria or toxic blooms of dinoflagellates. Remote sensing of aquatic systems has traditionally focused on quantification of chlorophyll a, a photoreactive (and light-harvesting) pigment which is common to all algae as well as cyanobacteria (bluegreen algae). Due to the ubiquitousness of this pigment within algae, chl a is routinely measured to estimate algal biomass both during ground-truthing and using various airborne or satellite based sensors, including AVIRIS. Within the remote sensing and aquatic sciences communities, ongoing research has been performed to detect algal accessory pigments for assessment of algal population composition. This research is based on the fact that many algal accessory pigments are taxonomically significant, and all are spectrally unique. Aquatic scientists have been refining pigment analysis techniques, primarily high performance liquid chromatography, or HPLC, to detect specific pigments as a time-saving alternative to individual algal cell identifications and counts. Remote sensing scientists are investigating the use of pigment signatures to construct pigment libraries analogous to mineral spectral libraries used in geological remote sensing applications. The accessory pigment approach has been used successfully in remote sensing using data from the Thematic Mapper, low-altitude, multiple channel scanners, field spectroradiometers and the AVIRIS hyperspectral scanner. Due to spectral and spatial resolution capabilities, AVIRIS is the sensor of choice for such studies. We present here our results on detection of algal accessory pigments using AVIRIS data.
Richardson, Laurie L.↗
Assessing the Feasibility of Using Various Earth Observations to Monitor Environmental Trends Associated with River Flow Impediments Near Energy Intake Structures
Grassing events, characterized by the release of river vegetation in large quantities, are often responsible for major flow impediments surrounding industrial water intake structures. These sudden flow impediments halt critical municipal functions, such as cooling at energy generating facilities, leading to widespread energy disruptions for surrounding communities. Because the origin and cause of grassing events in rivers are largely unknown, employees at these facilities can only reactively respond after they occur by pausing energy generation to manually remove the accumulation of aquatic vegetation. In 2023, the Dresden Generating Station, in collaboration with the United States Geological Survey, began looking into using remote sensing methodologies to locate floating aquatic vegetation surrounding their intake structure located along the Kankakee River in northern Illinois. This project contributed to this effort by conducting a case study that compared the performance, practicality, and feasibility of using various Earth observations (Landsat 9 OLI-2, Landsat 8 OLI, Sentinel-2 MSI, and DOVE PlanetScope) and vegetation indices (NDVI, EVI, SAVI, and GCI) to monitor aquatic vegetation in the Kankakee River. Additionally, this study incorporated several environmental metrics to identify potential triggers for grassing events. Results from this project found that while Landsat sensors provide a lower spatial resolution than commercial satellite Earth observations, areas of aquatic vegetation were similarly identified; therefore, it may not be necessary to acquire expensive, high-resolution datasets for continued monitoring. Finally, preliminary correlation analyses showed a potential negative relationship between the river discharge and the presence of aquatic vegetation (-0.875 correlation coefficient), suggesting that periods of low flow could lead to large releases in aquatic vegetation.
Marisa Smedsrud↗
Synthetic Hyperspectral Data for Global Water Quality Algorithm Development
Eutrophication and increasing prevalence of potentially toxic algal blooms (cyanoHABs) among global inland water bodies have become a major ecological concern and require direct attention. There is now a growing necessity to develop pragmatic approaches that allow timely and effective extrapolation of local aquatic processes, to spatially resolved global products. Planned aquatic biogeochemistry remote sensing data products from hyperspectral imagers such as NASA’s Surface Biology and Geology (SBG) mission and relevant aquatic sensor sensitivity precursor airborne imaging spectrometer data provide unprecedented radiometric resolution and sensor sensitivity for characterizing complex aquatic ecosystems. However, scarcity of high-quality freshwater in-situ optical data hinders our capability to develop and validate robust retrieval algorithms. A state-of-the-art synthetic dataset of paired top-of-atmosphere, bottom-of-atmosphere, and optical and biogeophysical data was developed through radiative transfer modeling to simulate natural freshwater ecosystems. A synthetic or precursor dataset for SBG is being used to train robust machine learning models to derive water quality products pertinent to SBG mission objectives. The dataset is also used to show the potential of performing vigorous aquatic sensitivity studies and explored pathways for how best to optimize hyperspectral data for machine learning development. A processing pipeline and resultant global synthetic/precursor dataset for inland waters is presented to establish the innovation for water quality studies of inland waters globally. Optical Society of America Imaging and Applied Optics Congress, Hyperspectral Imaging and Sounding of the Environment (OSA HISE) Meeting, 19-23 July 2021, Virtual Meeting, https://www.osa.org/enus/meetings/osa_meetings/optical_sensors_and_sensing_congress/program/hyperspectral_imaging_and_sounding_of_the_environm/
Synthetic↗
Spectrally Simplified Approach for Leveraging Legacy Geostationary Oceanic Observations
The use of multispectral geostationary satellites to study aquatic ecosystems improves the temporal frequency of observations and mitigates cloud obstruction, but no operational capability presently exists for the coastal and inland waters of the United States. The Advanced Baseline Imager (ABI) on the current iteration of the Geostationary Operational Environmental Satellites, termed the R Series (GOES-R), however, provides sub-hourly imagery and the opportunity to overcome this deficit and to leverage a large repository of existing GOES-R aquatic observations. The fulfillment of this opportunity is assessed herein using a spectrally simplified, two-channel aquatic algorithm consistent with ABI wave bands to estimate the diffuse attenuation coefficient for photosynthetically available radiation, K(d)(PAR). First, an in situ ABI dataset was synthesized using a globally representative dataset of above- and in-water radiometric data products. Values of K(d)(PAR) were estimated by fitting the ratio of the shortest and longest visible wave bands from the in situ ABI dataset to coincident, in situ K(d)(PAR) data products. The algorithm was evaluated based on an iterative cross-validation analysis in which 80% of the dataset was randomly partitioned for fitting and the remaining 20% was used for validation. The iteration producing the median coefficient of determination (R2) value (0.88) resulted in a root mean square difference of 0.319 m−1, or 8.5% of the range in the validation dataset. Second, coincident mid-day images of central and southern California from ABI and from the Moderate Resolution Imaging Spectroradiometer (MODIS) were compared using Google Earth Engine (GEE). GEE default ABI reflectance values were adjusted based on a near infrared signal. Matchups between the ABI and MODIS imagery indicated similar spatial variability (R2 = 0.60) between ABI adjusted blue-to-red reflectance ratio values and MODIS default diffuse attenuation coefficient for spectral downward irradiance at 490 nm, K(d)(490), values. This work demonstrates that if an operational capability to provide- ABI aquatic data products was realized, the spectral configuration of ABI would potentially support a sub-hourly, visible aquatic data product that is applicable to water-mass tracing and physical oceanography research.
Advanced Baseline Imager↗
Clarifying the trophic state concept to advance macroscale freshwater science and management
For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use‐specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non‐algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re‐evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.
classification↗
Differing behavioral changes in crayfish and bluegill under short- and long-chain PFAS exposures: Field study in Northern Michigan, USA
The emergent contaminant family, per- and poly-fluorinated alkyl substances (PFAS) has gained research attention due to their widespread detection and stability within the environment. Despite the growing amount of research on perfluorooctanesulfonic acid (PFOS) and perfluoro-n-octanoic acid (PFOA) in aquatic organisms, investigations detailing behavioral and physiological effects of aquatic organisms exposed to a mixture of PFAS analytes in the wild have been limited. The objective of this study was to evaluate the potential behavioral and histological effects of environmental exposure to PFAS compounds within multiple trophic levels of aquatic ecosystems. The current study investigates effects of environmentally relevant PFAS concentration exposures in crayfish (Faxonius immunis, F. rusticus, F. virilis) and bluegill (Lepomis macrochirus) sourced from four water bodies in Northern Michigan. Antipredator response and foraging behavioral assays were used to investigate potential effects on crayfish; a swimming speed behavioral assay and liver and gill histology analysis were used to investigate potential effects on fish. Linear mixed model and multiple regression analyses resulted in significant relationships between tissue accumulation levels of long chain PFAS compounds and crayfish foraging and fish critical swimming speed responses. Crayfish foraging decreased and fish critical swim speeds increased with PFAS exposure which may lead to energetic and population concerns. Antipredator response in crayfish and liver and gill histology in fish were not significantly related to PFAS tissue or water concentrations. The sensitivity of crayfish and bluegill behavior contributes to the growing body of research regarding the differential toxicity of short-chain and long-chain PFAS compounds. The sensitivity of some aquatic organism behaviors to PFAS accumulated in tissue may have implications for PFAS transfer and alterations to ecosystem functioning; based on the results of this field study, further laboratory research is recommended to further evaluate these relationships.
59 BASIC BIOLOGICAL SCIENCES↗
Quantifying the Influence of Size, Shape, and Density of Microplastics on Their Transport Modes: A Modeling Approach
Microplastics (MPs) pose significant risks to marine ecosystems and human health, necessitating accurate predictions of their distributions in aquatic environments for effective risk mitigation. However, understanding MP transport dynamics is challenging because of the inadequate representation of MP characteristics such as size, shape, and density in numerical models. Further, the accuracy of the MP vertical profiles in existing models has not been thoroughly validated. Thus, we developed an MP transport model within the Finite Volume Community Ocean Model framework (FVCOM-MP) by integrating MP characteristics. We validated FVCOM-MP against experimental and analytical data, focusing on various MP transport modes and transitions. FVCOM-MP successfully replicates MP profiles in different transport modes, including the bedload, surface-load, suspended-load, and mixed-load modes. Additionally, we introduce phase diagrams for classifying MP transport modes based on particle characteristics, enhancing our understanding of MP dynamics in aquatic systems. The transport modes for a number of real-world MP particles, including fishing line, plastic bag/bottle fragments, synthetic fibers, tire wear particles, polyvinyl chloride and expanded polystyrene pellets, were analyzed with these phase diagrams.
Microplastic transport, Settling velocity, Rising ↗
Biologically Derived Herders for petroleum-oceanic spillage: An Eco-friendly Herder
The petroleum industry is a vital international energy market, expected to generate $\$$5.3 trillion in US revenue is expected to generate in 2024. However, the market poses an environmental danger due to petroleum spillage in either extraction or aquatic transportation. In previous years there has been efforts to develop chemical herders compounds that aid in in situ burning (ISB) as a remedy to extract spilled petroleum in aquatic environments. Although, when implementing these chemical herders they tend to release toxic and non-biodegradable products upon ISB that may negatively impact aquatic. We suggest novel herder compounds that are biologically derived and biodegradable, which will not negatively impact aquatic environments. The proposed biological compounds will be synthesized from a Phytol chain and will be further functionalized with polyalcohols to construct amphipathic surfactants to safely implement ISB or extract petroleum to be recycled.
02 PETROLEUM↗
Bioaccumulation Factor for Radium in Rio Grande Biota
The Los Alamos National Laboratory (LANL or Laboratory) Environmental Protection and Compliance Division’s Environmental Stewardship Group (EPC-ES) performs the radiological analysis portion of biota dose assessments using the computer program RESRAD-Biota (DOE 2004, DOE 2020). RESRAD-Biota uses a default bioaccumulation factor, B iv , for radium in aquatic animals. This bioaccumulation factor, also listed in Department of Energy (DOE) Standard, DOE-STD-1153-2019, is the ratio of a radionuclide concentration in fresh weight biota to the environment in which it resides, which for aquatic animals is water. DOE-STD-1153-2019 offers conservative values for these ratios that are specific to the radiological contaminant, the biota, and the environment. The B iv in RESRAD-Biota can be used for general screening (Level 1 screening). If the factor proves to be too conservative, then a site-specific B iv may be used. The biota dose assessment of fish from the northern New Mexico region of the Rio Grande fail the general screen, which indicates that further analysis is necessary. Level 2 analysis is site-specific but still has conservative limitations. Level 3 analysis is a more realistic and representative, sitespecific analysis. The purpose of this paper is to use data specific to the Rio Grande to calculate a new aquatic animal radium B iv . This B iv can then be used for Level 3 analysis of aquatic animals specifically in the northern New Mexico region of the Rio Grande. The calculated radium B iv is a useful value for performing detailed, accurate biota dose assessments and calculating dose to fish using RESRAD-Biota when only sediment data are available.
54 ENVIRONMENTAL SCIENCES↗