Using MODIS Optical Reflectance Observations to Constrain Canopy Biophysics
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canopy structure↗
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Mapping Vegetation Structure in Kakadu National Park: An AIRSAR and GIS Application in Conservation
Airborne Synthetic Aperture Radar (AIRSAR) data were used to map vegetation structure in Kakadu National Park Australia as part of the PACRIM project. SAR data were co-registered with Landsat TM, aerial photos, and map data in a geographic information system for a small test area consisting of mangrove, floodplain grasslands, lowland tropical evergreen forest and upland mixed deciduous and evergreen tropical forest near the South Alligator River. Landsat (Thematic Mapper) TM very clearly showed the floristic composition and burn scars from the previous years fires and the AIRSAR data provided a profile of vegetation structure. Extensive field data on vegetation species composition and structure were collected across a series of transects in cooperation with a survey of avifauna in an effort to link the habitat edge structure with bird species responses. A test site was found that contained two types of habitat edges: 1) A structure specific edge - characterized by the appearance of a very strong structural change in the forest canopy occurring in the absence of a substantial turnover in floristics. 2) Floristic edge - a sharp transition in vegetation genetic composition with a mixed set of structural changes. Specific polarization combinations were selected that were highly correlated to a set of desired structural parameters found in the field data. Classification routines were employed to group radar pixels into 3 structural classes based on: the Surface Area to Volume ratio (SA/V) of the stems, the SA/V of the branches, and the leaf area index of the canopy. Separate canopy structure maps were then entered into the GIS and bird responses were observed relative to the classes and their boundaries. Follow-on work will consist of extending this approach to neighboring areas, generating structure maps, predicting bird responses across the edges, and make accuracy assessments.
Imhoff, Marc L.↗
Integrating high resolution drone imagery and forest inventory to distinguish canopy and understory trees and quantify their contributions to forest structure and dynamics
Tree growth and survival differ strongly between canopy trees (those directly exposed to overhead light), and understory trees. However, the structural complexity of many tropical forests makes it difficult to determine canopy positions. The integration of remote sensing and ground-based data enables this determination and measurements of how canopy and understory trees differ in structure and dynamics. Here we analyzed 2 cm resolution RGB imagery collected by a Remotely Piloted Aircraft System (RPAS), also known as drone, together with two decades of bi-annual tree censuses for 2 ha of old growth forest in the Central Amazon. We delineated all crowns visible in the imagery and linked each crown to a tagged stem through field work. Canopy trees constituted 40% of the 1244 inventoried trees with diameter at breast height (DBH) > 10 cm, and accounted for ~70% of aboveground carbon stocks and wood productivity. The probability of being in the canopy increased logistically with tree diameter, passing through 50% at 23.5 cm DBH. Diameter growth was on average twice as large in canopy trees as in understory trees. Growth rates were unrelated to diameter in canopy trees and positively related to diameter in understory trees, consistent with the idea that light availability increases with diameter in the understory but not the canopy. The whole stand size distribution was best fit by a Weibull distribution, whereas the separate size distributions of understory trees or canopy trees > 25 cm DBH were equally well fit by exponential and Weibull distributions, consistent with mechanistic forest models. The identification and field mapping of crowns seen in a high resolution orthomosaic revealed new patterns in the structure and dynamics of trees of canopy vs. understory at this site, demonstrating the value of traditional tree censuses with drone remote sensing.
59 BASIC BIOLOGICAL SCIENCES↗
The influence of elevated CO2 on non-structural carbohydrate distribution and fructan accumulation in wheat canopies
We grew 2.4 m2 wheat canopies in a large growth chamber under high photosynthetic photon flux (1000 micromoles m-2 s-1) and using two CO2 concentrations, 360 and 1200 micromoles mol-1. Photosynthetically active radiation (400-700 nm) was attenuated slightly faster through canopies grown in 360 micromoles mol-1 than through canopies grown in 1200 micromoles mol-1, even though high-CO2 canopies attained larger leaf area indices. Tissue fractions were sampled from each 5-cm layer of the canopies. Leaf tissue sampled from the tops of canopies grown in 1200 micromoles mol-1 accumulated significantly more total non-structural carbohydrate, starch, fructan, sucrose, and glucose (p < 0.05) than for canopies grown in 360 micromoles mol-1. Non-structural carbohydrate did not significantly increase in the lower canopy layers of the elevated CO2 treatment. Elevated CO2 induced fructan synthesis in all leaf tissue fractions, but fructan formation was greatest in the uppermost leaf area. A moderate temperature reduction of 10 degrees C over 5 d increased starch, fructan and glucose levels in canopies grown in 1200 micromoles mol-1, but concentrations of sucrose and fructose decreased slightly or remained unchanged. Those results may correspond with the use of fructosyl-residues and release of glucose when sucrose is consumed in fructan synthesis.
NASA Discipline Life Support Systems↗
Directional radiometric measurements of row-crop temperatures
The variability of directional sensor response for a cotton row crop in Phoenix, Arizona was measured for various solar zenith angles. The geometric structure of the canopy was described with regard to height, width, spacing, and shape of rows. In addition, radiometric temperature data were collected on four scene components: sunlit and shaded vegetation and sunlit and shaded soil. These data were used to test the predictions and assumptions of a modified version of the row crop model of Jackson et al. (1979), which predicts the thermal infrared response of a sensor as a function of sensor view angle, component temperature, and geometrical structure of the canopy. The field data showed sensor response differentials as great as 16.2 C when going from a zenith view angle of 0 deg to one of 80 deg normal to the row direction. The rms deviation between the predicted and measured sensor response for all measurement periods and view angles was 0.96 C.
Kimes, D. S.↗
Application of Computer Axial Tomography (CAT) to measuring crop canopy geometry
The feasibility of using the principles of computer axial topography (CAT) to quantify the structure of crop canopies was investigated because six variables are needed to describe the position-orientation with time of a small piece of canopy foliage. Several cross sections were cut through the foliage of healthy, green corn and soybean canopies in the dent and full pod development stages, respectively. A photograph of each cross section representing the intersection of a plane with the foliage was enlarged and the air-foliage boundaries delineated by the plane were digitized. A computer program was written and used to reconstruct the cross section of the canopy. The approach used in applying optical computer axial tomography to measuring crop canopy geometry shows promise of being able to provide needed geometric information for input data to canopy reflectance models. The difficulty of using the CAT scanner to measure large canopies of crops like corn is discussed and a solution is proposed involving the measurement of plants one at a time.
Bauer, M. E.↗
Estimation of Boreal Forest Biomass Using Spaceborne SAR Systems
In this paper, we report on the use of a semiempirical algorithm derived from a two layer radar backscatter model for forest canopies. The model stratifies the forest canopy into crown and stem layers, separates the structural and biometric attributes of the canopy. The structural parameters are estimated by training the model with polarimetric SAR (synthetic aperture radar) data acquired over homogeneous stands with known above ground biomass. Given the structural parameters, the semi-empirical algorithm has four remaining parameters, crown biomass, stem biomass, surface soil moisture, and surface rms height that can be estimated by at least four independent SAR measurements. The algorithm has been used to generate biomass maps over the entire images acquired by JPL AIRSAR and SIR-C SAR systems. The semi-empirical algorithms are then modified to be used by single frequency radar systems such as ERS-1, JERS-1, and Radarsat. The accuracy. of biomass estimation from single channel radars is compared with the case when the channels are used together in synergism or in a polarimetric system.
Saatchi, Sassan↗
A scale-wise analysis of intermittent momentum transport in dense canopy flows
We investigate the intermittent dynamics of momentum transport and its underlying time scales in the near-wall region of the neutrally stratified atmospheric boundary layer in the presence of a vegetation canopy. This is achieved through an empirical analysis of the persistence time scales (periods between successive zero-crossings) of momentum flux events, and their connection to the ejection–sweep cycle. Using high-frequency measurements from the GoAmazon campaign, spanning multiple heights within and above a dense canopy, the analysis suggests that, when the persistence time scales ( $t_p$ ) of momentum flux events from four different quadrants are separately normalized by $\varGamma _{w}$ (integral time scale of the vertical velocity), their distributions $P(t_p/\varGamma _{w})$ remain height-invariant. This result points to a persistent memory imposed by canopy-induced coherent structures, and to their role as an efficient momentum-transporting mechanism between the canopy airspace and the region immediately above. Moreover, $P(t_p/\varGamma _{w})$ exhibits a power-law scaling at times $t_{p}<\varGamma _{w}$ , with an exponential tail appearing for $t_{p} \geq \varGamma _{w}$ . By separating the flux events based on $t_p$ , we discover that around 80 % of the momentum is transported through the long-lived events ( $t_{p} \geq \varGamma _{w}$ ) at heights immediately above the canopy, while the short-lived ones ( $t_{p} < \varGamma _{w}$ ) only contribute marginally ( $\approx 20\,\%$ ). To explain the role of instantaneous flux amplitudes in momentum transport, we compare the measurements with newly developed surrogate data and establish that the range of time scales involved with amplitude variations in the fluxes tends to increase as one transitions from within to above the canopy.
Mechanics↗
Boreal Canopy Surfaces from Spaceborne Stereogrammetry
Surface elevation estimates from high resolution spaceborne image (HRSI) stereogrammetry are used to examine fine-scaled structure of boreal forest canopies. These data can depict detailed spatial patterns of vertical forest structure at remote sites across the circumpolar domain where these estimates would otherwise be unavailable. This work examines where these estimates are most effective at describing vertical forest structure to explain which canopy surfaces they represent. We evaluated the variation in canopy surface estimates captured from four general types of HRSI digital surface models (DSMs) across the full range of boreal canopy cover.
Paul M Montesano↗
Thermal signatures of urban land cover types: High-resolution thermal infrared remote sensing of urban heat island in Huntsville, AL
The main objective of this research is to apply airborne high-resolution thermal infrared imagery for urban heat island studies, using Huntsville, AL, a medium-sized American city, as the study area. The occurrence of urban heat islands represents human-induced urban/rural contrast, which is caused by deforestation and the replacement of the land surface by non-evaporating and non-porous materials such as asphalt and concrete. The result is reduced evapotranspiration and more rapid runoff of rain water. The urban landscape forms a canopy acting as a transitional zone between the atmosphere and the land surface. The composition and structure of this canopy have a significant impact on the thermal behavior of the urban environment. Research on the trends of surface temperature at rapidly growing urban sites in the United States during the last 30 to 50 years suggests that significant urban heat island effects have caused the temperatures at these sites to rise by 1 to 2 C. Urban heat islands have caused changes in urban precipitation and temperature that are at least similar to, if not greater than, those predicted to develop over the next 100 years by global change models. Satellite remote sensing, particularly NOAA AVHRR thermal data, has been used in the study of urban heat islands. Because of the low spatial resolution (1.1 km at nadir) of the AVHRR data, these studies can only examine and map the phenomenon at the macro-level. The present research provides the rare opportunity to utilize 5-meter thermal infrared data acquired from an airplane to characterize more accurately the thermal responses of different land cover types in the urban landscape as input to urban heat island studies.
Lo, Chor Pang↗
Directional and temporal variability of the APAR/VI relationships - The case of a sunflower canopy
Detailed biomass and structure measurements as well as photosynthetically active radiation (PAR) balance and bidirectional and polarized reflectances in various wavebands from 450 nm to 1750 nm have been conducted over a sunflower canopy in France. Preliminary results show that the vegetation indices (NDVI or TSAVI) computed from the red and near-infrared reflectances exhibit strong directional and temporal (variation with the sun zenith angle) features. The relationship between the vegetation indices and the PAR fraction absorbed or intercepted by the canopy is likely to vary greatly with these factors.
Baret, F.↗
Escape Ratio Contributes More Than Fluorescence Yield to SIF-GPP Relationship Over Crops and Rainforest
Solar-induced chlorophyll fluorescence (SIF) is an effective indicator to track the gross primary productivity (GPP). However, there is still a lack of a clear understanding for the contribution of physiological and structural factors to the SIF–GPP relationship at the canopy scale. To quantify the influence of different SIF components, particularly the photon escape ratio ($f$ esc ) and fluorescence yield (Φ F ), on the SIF–GPP relationship, this study evaluated the performance of various vegetation indices (VIs), SIF components, light use efficiency (LUE), and GPP over two typical biomes (crops and rainforest), using a range of satellite remote sensing products. In August of each year from 2018 to 2020, both SIF and GPP over United States (U.S.) Corn Belt are higher than those over the Amazon rainforest, attributed to the consistent pattern of higher $f$ esc and LUE over crops than over rainforest, as well as Φ F . Furthermore, the structural signals represented by $f$ esc (R = 0.41–0.64) can better capture the LUE variations than Φ F (R = 0.10–0.30) for each biome. In conclusion, this study highlights that $f$ esc , determined by canopy structure, has great potential to capture LUE and GPP changes within and across biomes.
60 APPLIED LIFE SCIENCES↗
Estimating structural attributes of Douglas-fir/western hemlock forest stands from Landsat and SPOT imagery
Relationships between spectral and texture variables derived from SPOT HRV 10 m panchromatic and Landsat TM 30 m multispectral data and 16 forest stand structural attributes is evaluated to determine the utility of satellite data for analysis of hemlock forests west of the Cascade Mountains crest in Oregon and Washington, USA. Texture of the HRV data was found to be strongly related to many of the stand attributes evaluated, whereas TM texture was weakly related to all attributes. Data analysis based on regression models indicates that both TM and HRV imagery should yield equally accurate estimates of forest age class and stand structure. It is concluded that the satellite data are a valuable source for estimation of the standard deviation of tree sizes, mean size and density of trees in the upper canopy layers, a structural complexity index, and stand age.
Cohen, Warren B.↗
Influence of sun zenith angle on canopy clumping and the resulting impacts on photosynthesis
Addressing the impact of vegetation architecture on shortwave radiation transfer in land surface models is important for accurate weather forecasting, carbon budget estimates, and climate predictions. This paper investigates to what extent it is possible to retrieve structural parameters of two different parameterization schemes from direct transmittance derived from digital hemispherical photography and 3D radiative transfer modeling for two study sites with different vegetation canopy architectures. Neglecting the representation of 3D canopy structure in radiative transfer schemes leads to significant errors in shortwave radiation partitioning (up to 3.5 times more direct transmittance in the 3D model). Structural parameters, referred to as whole canopy ‘clumping indices’, were obtained in order to evaluate the impact of angular variation in clumping on shortwave radiation transfer. Impacts on photosynthesis were evaluated at site level with the UKESM land surface model, JULES. A comparison between flux tower derived and modeled photosynthesis indicates that considering zenith angular variations of structural parameters in the radiative transfer scheme of the UKESM land surface model significantly improves photosynthesis prediction in light limited ecosystems (from RMSE = 2.91 μmol CO 2 .m -2 .s -1 to RMSE = 1.51 μmol CO 2 .m -2 .s -1 , 48% smaller), typically with enhanced photosynthesis from bottom layers.
54 ENVIRONMENTAL SCIENCES↗
Applications of the BIOPHYS Algorithm for Physically-Based Retrieval of Biophysical, Structural and Forest Disturbance Information
Canopy reflectance model inversion using look-up table approaches provides powerful and flexible options for deriving improved forest biophysical structural information (BSI) compared with traditional statistical empirical methods. The BIOPHYS algorithm is an improved, physically-based inversion approach for deriving BSI for independent use and validation and for monitoring, inventory and quantifying forest disturbance as well as input to ecosystem, climate and carbon models. Based on the multiple-forward mode (MFM) inversion approach, BIOPHYS results were summarized from different studies (Minnesota/NASA COVER; Virginia/LEDAPS; Saskatchewan/BOREAS), sensors (airborne MMR; Landsat; MODIS) and models (GeoSail; GOMS). Applications output included forest density, height, crown dimension, branch and green leaf area, canopy cover, disturbance estimates based on multi-temporal chronosequences, and structural change following recovery from forest fires over the last century. Good correspondences with validation field data were obtained. Integrated analyses of multiple solar and view angle imagery further improved retrievals compared with single pass data. Quantifying ecosystem dynamics such as the area and percent of forest disturbance, early regrowth and succession provide essential inputs to process-driven models of carbon flux. BIOPHYS is well suited for large-area, multi-temporal applications involving multiple image sets and mosaics for assessing vegetation disturbance and quantifying biophysical structural dynamics and change. It is also suitable for integration with forest inventory, monitoring, updating, and other programs.
Peddle, Derek R.↗
Multi-resolution, Multi-scale Modeling for Scalable Macroalgae Production
Macroalgae harvested along coastlines and in the open ocean has traditionally been used as food for human consumption, animal feed, and fertilizer. The U.S. ARPA-E MARINER Program estimates that the nation has suitable conditions and geography to produce at least 500 million dry metric tons of macroalgae per year, yielding approximately 2.7 quadrillion BTUs of energy in the form of liquid fuel, which is roughly 10% of the nation’s annual transportation energy demand. Adverse environmental effects of nutrient overload and ocean acidification may also be reduced by large-scale macroalgae cultivation in many coastal ocean regions. However, the successful deployment of large-scale marine macroalgae farms for fuel production depends on ambient hydrodynamic conditions and nutrient availability, as well as their interactions with macroalgae farm structures. Pacific Northwest National Laboratory led an ARPA-E MARINER project to develop a set of numerical modeling tools capable of simulating ocean hydrodynamic and biogeochemical processes, macroalgae trajectories for free-floating systems, macroalgae growth and biomass yields, and hydrodynamic load on macroalgae canopies and farm structures using a multi-resolution and multi-scale approach. This set of modeling tools provides a suite of information essential for system design, optimal project siting, risk analysis, and management of macroalgae production systems in the ocean. Better clarity can also help macroalgae system developers reduce deployment costs, operational risk, and potential impacts on the local marine environment.
59 BASIC BIOLOGICAL SCIENCES↗
Future Plans in US Flight Missions: Using Laser Remote Sensing for Climate Science Observations
Laser Remote Sensing provides critical climate science observations necessary to better measure, understand, model and predict the Earth's water, carbon and energy cycles. Laser Remote Sensing applications for studying the Earth and other planets include three dimensional mapping of surface topography, canopy height and density, atmospheric measurement of aerosols and trace gases, plume and cloud profiles, and winds measurements. Beyond the science, data from these missions will produce new data products and applications for a multitude of end users including policy makers and urban planners on local, national and global levels. NASA Missions in formulation including Ice, Cloud, and land Elevation Satellite (ICESat 2) and the Deformation, Ecosystem Structure, and Dynamics of Ice (DESDynI), and future missions such as the Active Sensing of CO2 Emissions over Nights, Days and Seasons (ASCENDS), will incorporate the next generation of LIght Detection And Ranging (lidar) instruments to measure changes in the surface elevation of the ice, quantify ecosystem carbon storage due to biomass and its change, and provide critical data on CO 2 in the atmosphere. Goddard's plans for these instruments and potential uses for the resulting data are described below. For the ICESat 2 mission, GSFC is developing a micro-pulse multi-beam lidar. This instrument will provide improved ice elevation estimates over high slope and very rough areas and result in improved lead detection for sea ice estimates. Data about the sea ice and predictions related to sea levels will continue to help inform urban planners as the changes in the polar ice accelerate. DESDynI is planned to be launched in 2017 and includes both lidar and radar instruments. GSFC is responsible for the lidar portion of the DESDynI mission and is developing a scanning laser altimeter that will measure the Earth's topography, the structure of tree canopies, biomass, and surface roughness. The DESDynI lidar will also measure and predict the response of ice masses to climate change and impact on sea level. Data from the lidar will ultimately be fused with radar data products with heretofore unseen results and applications. The 3-D structure of forests is critical to understanding the impact of land use and associated landscape changes on the habitat of life forms and consequently on their biodiversity. Lidar instruments are also under development to measure trace gases in the atmospheric such as CO2 and methane. GSFC is developing an active measurement approach to determine the CO2 column density and surface pressure for the proposed ASCENDS mission. The objective of this approach is to produce data on the amounts of anthropogenic and organic CO2 in the atmosphere with sufficient accuracy to meet the needs of target users including state, federal and international users as well as policy-related legislative, regulatory, and voluntary carbon-related management groups local to international interests. In summary, NASA will continue to rely on laser remote sensing for critical climate science observations and is committed to the development of the next generation of lidar instruments for a range of applications.
Callahan, Lisa W.↗
A Multi-Sensor Unoccupied Aerial System Improves Characterization of Vegetation Composition and Canopy Properties in the Arctic Tundra
Changes in vegetation distribution, structure, and function can modify the canopy properties of terrestrial ecosystems, with potential consequences for regional and global climate feedbacks. In the Arctic, climate is warming twice as fast as compared to the global average (known as ‘Arctic amplification’), likely having stronger impacts on arctic tundra vegetation. In order to quantify these changes and assess their impacts on ecosystem structure and function, methods are needed to accurately characterize the canopy properties of tundra vegetation types. However, commonly used ground-based measurements are limited in spatial and temporal coverage, and differentiating low-lying tundra plant species is challenging with coarse-resolution satellite remote sensing. The collection and processing of multi-sensor data from unoccupied aerial systems (UASs) has the potential to fill the gap between ground-based and satellite observations. To address the critical need for such data in the Arctic, we developed a cost-effective multi-sensor UAS (the ‘Osprey’) using off-the-shelf instrumentation. The Osprey simultaneously produces high-resolution optical, thermal, and structural images, as well as collecting point-based hyperspectral measurements, over vegetation canopies. In this paper, we describe the setup and deployment of the Osprey system in the Arctic to a tundra study site located in the Seward Peninsula, Alaska. We present a case study demonstrating the processing and application of Osprey data products for characterizing the key biophysical properties of tundra vegetation canopies. In this study, plant functional types (PFTs) representative of arctic tundra ecosystems were mapped with an overall accuracy of 87.4%. The Osprey image products identified significant differences in canopy-scale greenness, canopy height, and surface temperature among PFTs, with deciduous low to tall shrubs having the lowest canopy temperatures while non-vascular lichens had the warmest. The analysis of our hyperspectral data showed that variation in the fractional cover of deciduous low to tall shrubs was effectively characterized by Osprey reflectance measurements across the range of visible to near-infrared wavelengths. Therefore, the development and deployment of the Osprey UAS, as a state-of-the-art methodology, has the potential to be widely used for characterizing tundra vegetation composition and canopy properties to improve our understanding of ecosystem dynamics in the Arctic, and to address scale issues between ground-based and airborne/satellite observations.
54 ENVIRONMENTAL SCIENCES↗