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At least 199 records · Page 11

The hTERT core promoter forms three parallel G-quadruplexes

The structure of the 68 nt sequence with G-quadruplex forming potential within the hTERT promoter is disputed. One model features a structure with three stacked parallel G-quadruplex units, while another features an unusual duplex hairpin structure adjoined to two stacked parallel and antiparallel quadruplexes. We report here the results of an integrated structural biology study designed to distinguish between these possibilities. As part of our study, we designed a sequence with an optimized hairpin structure and show that its biophysical and biochemical properties are inconsistent with the structure formed by the hTERT wild-type sequence. By using circular dichroism, thermal denaturation, nuclear magnetic resonance spectroscopy, analytical ultracentrifugation, small-angle X-ray scattering, molecular dynamics simulations and a DNase I cleavage assay we found that the wild type hTERT core promoter folds into a stacked, three-parallel G-quadruplex structure. The hairpin structure is inconsistent with all of our experimental data obtained with the wild-type sequence. All-atom models for both structures were constructed using molecular dynamics simulations. These models accurately predicted the experimental hydrodynamic properties measured for each structure. We found with certainty that the wild-type hTERT promoter sequence does not form a hairpin structure in solution, but rather folds into a compact stacked three-G-quadruplex conformation.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental Demonstration of Ferroelectric Spiking Neurons for Unsupervised Clustering

© 2018 IEEE. We report the first experimental demonstration of ferroelectric field-effect transistor (FEFET) based spiking neurons. A unique feature of the ferroelectric (FE) neuron demonstrated herein is the availability of both excitatory and inhibitory input connections in the compact 1T-1FEFET structure, which is also reported for the first time for any neuron implementations. Such dual neuron functionality is a key requirement for bio-mimetic neural networks and represents a breakthrough for implementation of the third generation spiking neural networks (SNNs) - also reported herein for unsupervised learning and clustering on real world data for the first time. The key to our demonstration is the careful design of two important device level features: (1) abrupt hysteretic transitions of the FEFET with no stable states therein, and (2) the dynamic tunability of the FEFET hysteresis by bias conditions which allows for the inhibition functionality. Experimentally calibrated, multi-domain Preisach based FEFET models were used to accurately simulate the FE neurons and project their performance at scaled nodes. We also implement an SNN for unsupervised clustering and benchmark the network performance across analog CMOS and emerging technologies and observe (1) unification of excitatory and inhibitory neural connections, (2) STDP based learning, (3) lowest reported power (3.6nW) during classification, and (4) a classification accuracy of 93%.

Wang, Z↗

Characterizing crystalline defects in single nanoparticles from angular correlations of single-shot diffracted X-rays

Characterizing and controlling the uniformity of nanoparticles is crucial for their application in science and technology because crystalline defects in the nanoparticles strongly affect their unique properties. Recently, ultra-short and ultra-bright X-ray pulses provided by X-ray free-electron lasers (XFELs) opened up the possibility of structure determination of nanometre-scale matter with Å spatial resolution. However, it is often difficult to reconstruct the 3D structural information from single-shot X-ray diffraction patterns owing to the random orientation of the particles. This report proposes an analysis approach for characterizing defects in nanoparticles using wide-angle X-ray scattering (WAXS) data from free-flying single nanoparticles. The analysis method is based on the concept of correlated X-ray scattering, in which correlations of scattered X-ray are used to recover detailed structural information. WAXS experiments of xenon nanoparticles, or clusters, were conducted at an XFEL facility in Japan by using the SPring-8 Ångstrom compact free-electron laser (SACLA). Bragg spots in the recorded single-shot X-ray diffraction patterns showed clear angular correlations, which offered significant structural information on the nanoparticles. The experimental angular correlations were reproduced by numerical simulation in which kinematical theory of diffraction was combined with geometric calculations. We also explain the diffuse scattering intensity as being due to the stacking faults in the xenon clusters.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Wide-Field Hubble Space Telescope Observations of the Globular Cluster System in NGC 1399*

We present a comprehensive high spatial resolution imaging study of globular clusters (GCs) in NGC 1399, thecentral giant elliptical cD galaxy in the Fornax galaxy cluster, conducted with the Advanced Camera for Surveys(ACS) aboard theHubble Space Telescope(HST).Using a novel technique to construct drizzled point-spreadfunction libraries for HSTACS data, we accurately determine the fidelity of GC structural parameter measurementsfrom detailed artificial star cluster experiments and show the superior robustness of the GC half-light radius,rh,compared with other GC structural parameters, such as King core and tidal radius. The measurement ofrhfor themajor fraction of the NGC 1399 GC system reveals a trend of increasingrhversus galactocentric distance,Rgal,out to about 10 kpc and a flat relation beyond. This trend is very similar for blue and red GCs, which are found tohave a mean size ratio ofrh,redrh,blue0.820.11 at all galactocentric radii from the core regions of the galaxyout to40 kpc. This suggests that the size difference between blue and red GCs is due to internal mechanismsrelated to the evolution of their constituent stellar populations. Modeling the mass density profile of NGC 1399shows that additional external dynamical mechanisms are required to limit the GC size in the galaxy halo regionstorh2 pc. We suggest that this may be realized by an exotic GC orbit distribution function, an extended darkmatter halo, andor tidal stress induced by the increased stochasticity in the dwarf halo substructure at largergalactocentric distances. We compare our results with the GCrhdistribution functions in various galaxies and findthat the fraction of extended GCs withrh5 pc is systematically larger in late-type galaxies compared with GCsystems in early-type galaxies. This is likely due to the dynamically more violent evolution of early-type galaxies.We match our GCrhmeasurements with radial velocity data from the literature and split the resulting sample at themedianrhvalue into compact and extended GCs. We find that compact GCs show a significantly smaller line-of-sight velocity dispersion,cmp22525 km s1, than their extended counterparts,ext31721 km s1.Considering the weaker statistical correlation in the GCrhcolor and the GCrhRgalrelations, the more significantGC sizedynamics relation appears to be astrophysically more relevant and hints at the dominant influence of theGC orbit distribution function on the evolution of GC structural parameters.

Hubble↗

Initial examination of fuel compacts and TRISO particles from the US AGR-2 irradiation test

Post-irradiation examination was completed on two as-irradiated compacts from the US Advanced Gas Reactor Fuel Development and Qualification Program’s second irradiation test. These compacts were selected for examination because there were indications that they may have contained particles that released cesium through a failed or defective SiC layer. The coated particles were recovered from these compacts by electrolytic deconsolidation of the surrounding graphitic matrix in nitric acid. The leach-burn-leach (LBL) process was used to dissolve and analyze exposed metallic elements (actinides and fission products), and each particle was individually surveyed for relative cesium retention with the Irradiated Microsphere Gamma Analyzer (IMGA). Data from IMGA and LBL examinations provided information on fission product release during irradiation and whether any specific particles had below-average retention that could be related to coating layer defects or radiation-induced degradation. A few selected normal-retention particles and six with abnormally-low cesium inventory were analyzed using X-ray tomography to produce three-dimensional images of the internal coating structure. Four of the low-cesium particles had obviously damaged or degraded SiC, and X-ray imaging was able to guide subsequent grinding and polishing to expose the regions of interest for analysis by optical and electron microscopy. Additional particles from each compact were also sectioned and examined to study the overall radiation-induced microstructural changes in the kernel and coating layers.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Structure and Hardness of Ceramics Produced through High-Temperature Nitridation of Titanium Foil

We have studied the variation in the phase composition, elemental composition, and microstructure of rolled titanium samples during thermal annealing in a nitrogen atmosphere at 1300, 1500, 1700, and 2000°C. The results demonstrate that the nitridation process can yield compact titanium nitride-based ceramics or TiN/TiN{sub x}/α-Ti〈N〉 heterostructures. X-ray diffraction data for the near-surface region of the samples before and after nitridation and those for cross-sectional fracture surfaces of heterostructures are used to infer orientation relationships between the TiN phase and α-Ti〈N〉 solid solution. Scanning electron microscopy results for cross-sectional fracture surfaces indicate that complete nitridation of the samples leads to the formation of a three-layer microstructure.

36 MATERIALS SCIENCE↗

Spinoff 2010

Topics covered include: Burnishing Techniques Strengthen Hip Implants; Signal Processing Methods Monitor Cranial Pressure; Ultraviolet-Blocking Lenses Protect, Enhance Vision; Hyperspectral Systems Increase Imaging Capabilities; Programs Model the Future of Air Traffic Management; Tail Rotor Airfoils Stabilize Helicopters, Reduce Noise; Personal Aircraft Point to the Future of Transportation; Ducted Fan Designs Lead to Potential New Vehicles; Winglets Save Billions of Dollars in Fuel Costs; Sensor Systems Collect Critical Aerodynamics Data; Coatings Extend Life of Engines and Infrastructure; Radiometers Optimize Local Weather Prediction; Energy-Efficient Systems Eliminate Icing Danger for UAVs; Rocket-Powered Parachutes Rescue Entire Planes; Technologies Advance UAVs for Science, Military; Inflatable Antennas Support Emergency Communication; Smart Sensors Assess Structural Health; Hand-Held Devices Detect Explosives and Chemical Agents; Terahertz Tools Advance Imaging for Security, Industry; LED Systems Target Plant Growth; Aerogels Insulate Against Extreme Temperatures; Image Sensors Enhance Camera Technologies; Lightweight Material Patches Allow for Quick Repairs; Nanomaterials Transform Hairstyling Tools; Do-It-Yourself Additives Recharge Auto Air Conditioning; Systems Analyze Water Quality in Real Time; Compact Radiometers Expand Climate Knowledge; Energy Servers Deliver Clean, Affordable Power; Solutions Remediate Contaminated Groundwater; Bacteria Provide Cleanup of Oil Spills, Wastewater; Reflective Coatings Protect People and Animals; Innovative Techniques Simplify Vibration Analysis; Modeling Tools Predict Flow in Fluid Dynamics; Verification Tools Secure Online Shopping, Banking; Toolsets Maintain Health of Complex Systems; Framework Resources Multiply Computing Power; Tools Automate Spacecraft Testing, Operation; GPS Software Packages Deliver Positioning Solutions; Solid-State Recorders Enhance Scientific Data Collection; Computer Models Simulate Fine Particle Dispersion; Composite Sandwich Technologies Lighten Components; Cameras Reveal Elements in the Short Wave Infrared; Deformable Mirrors Correct Optical Distortions; Stitching Techniques Advance Optics Manufacturing; Compact, Robust Chips Integrate Optical Functions; Fuel Cell Stations Automate Processes, Catalyst Testing; Onboard Systems Record Unique Videos of Space Missions; Space Research Results Purify Semiconductor Materials; and Toolkits Control Motion of Complex Robotics.

Source record↗

Counterions under a Surface-Adsorbed Cationic Surfactant Monolayer: Structure and Thermodynamics

The surface adsorption of ionic surfactants is fundamental for many widespread phenomena in life sciences and for a wide range of technological applications. However, direct atomic-resolution structural experimental studies of noncrystalline surface-adsorbed films are scarce. Thus, even the most central physical aspects of these films, such as their charge density, remain uncertain. Consequently, theoretical models based on contradicting assumptions as for the surface films' ionization are widely used for the description and prediction of surface thermodynamics. We employ X-ray reflectivity to obtain the angstrom Ångström-scale surface-normal structure of surface-adsorbed films of the cationic surfactant cetyltrimethylammonium bromide (CTAB) in aqueous solutions at several different temperatures and concentrations. In conjunction with published neutron reflectivity data, we determine the surface-normal charge distribution due to the dissociated surfactants' headgroups. The distribution appears to be inconsistent with the Gouy-Chapman model yet consistent with a compact Stern layer model of condensed counterions. Here, the experimental surfactant adsorption thermodynamics conforms well to classical, Langmuir and Kralchevsky, adsorption models. Furthermore, the Kralchevsky model correctly reproduces the observed condensation of counterions, allowing the values of the adsorption parameters to be resolved, based on the combination of the present data and the published surface tension measurements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Bayesian inference of anisotropic 2D small-angle scattering from sparse measurement

Here, we present a Bayesian inference framework for reconstructing anisotropic two-dimensional small-angle scattering (2D SAS) patterns from sparse, noisy, or partially missing data. The method combines a symmetry-aware angular basis with radial Gaussian process priors to enable accurate, training-free interpolation and denoising. Computational benchmarks demonstrate reliable recovery of both isotropic and high-order anisotropic features under severe data reduction. Experimental validations on stretched polymers, sheared wormlike micelles, and carbon fibers show improved fidelity and resolution compared to raw measurements, achieving comparable accuracy with up to 50-fold fewer detected neutrons. This approach enables quantitative structural analysis under low-flux, time-limited, or single-shot conditions, extending the applicability of 2D SAS techniques to compact neutron sources and mechanically driven soft matter systems undergoing transient structural changes.

Tung, Chi-Huan [Oak Ridge National Laboratory (ORN↗

Panning for Gold: New Emission Lines from UV–VIS Spectroscopy of Au i and Au ii

The recent detection of a neutron star merger by the LIGO collaboration has renewed interest in laboratory studies of r-process elements. Accurate modeling and interpretation of the electromagnetic transients following the mergers requires computationally expensive calculations of both the structure and opacity of all trans-iron elements. To date, the necessary atomic data to benchmark structure codes are incomplete or, in some cases, absent entirely. Within the available laboratory studies, the literature on Au i and Au ii provides incomplete reports of the emission lines and level structures. We present a new study of Au i and Au ii lines and levels by exposing a solid gold target to plasma in the Compact Toroidal Hybrid (CTH) experiment at Auburn University. A wavelength range from 187 to 800 nm was studied. In Au i, 86 lines are observed, 43 of which are unreported in the literature, and the energies of 18 $5{d}^{9}6s6p$ levels and 16 of the 18 known $5{d}^{9}6s6d$ levels are corroborated by a least-squares level energy optimization. In Au ii, 76 emission lines are observed, and 51 of the lines are unreported in the literature. For both Au i and Au ii, the new lines predominantly originate from the most energetic of the known levels, and over half of the new Au ii lines have wavelengths longer than 300 nm. For the estimated electron parameters of CTH plasmas at the gold target (ne ~ 10 12 cm -3 , T e ~ 10 eV), two-electron transitions are similar in intensity to LS-allowed one-electron transitions.

79 ASTRONOMY AND ASTROPHYSICS↗

Vibration and stress analysis of soft-bonded shuttle insulation tiles. Modal analysis with compact widely space stringers

An efficient iterative procedure is described for the vibration and modal stress analysis of reusable surface insulation (RSI) of multi-tiled space shuttle panels. The method, which is quite general, is rapidly convergent and highly useful for this application. A user-oriented computer program based upon this procedure and titled RESIST (REusable Surface Insulation Stresses) has been prepared for the analysis of compact, widely spaced, stringer-stiffened panels. RESIST, which uses finite element methods, obtains three dimensional tile stresses in the isolator, arrestor (if any) and RSI materials. Two dimensional stresses are obtained in the tile coating and the stringer-stiffened primary structure plate. A special feature of the program is that all the usual detailed finite element grid data is generated internally from a minimum of input data. The program can accommodate tile idealizations with up to 850 nodes (2550 degrees-of-freedom) and primary structure idealizations with a maximum of 10,000 degrees-of-freedom. The primary structure vibration capability is achieved through the development of a new rapid eigenvalue program named ALARM (Automatic LArge Reduction of Matrices to tridiagonal form).

Ojalvo, I. U.↗

Infrared and radio measurements of the density structure of compact H II regions

The density structure of compact H II regions is studied by comparing the ratio of the S III forbidden 33.47-micron and 18.71-micron emission lines and 5-GHz continuum maps. Electron densities are computed for DR 22, G29.9 - 0.0, G75.84 + 0.4, M8, M42, S158, W3, and W33. For DR 22, M42, and W3, the electron densities determined from the IR data are consistent with those derived from radio observations. The densities for S158 and M8 are quite low, implying that the S III emission is dominated by the diffuse ionized gas observed in the radio continuum. For G29.9 - 0.0, G75.84 + 0.4, and W33, the S III data give higher densities than predicted from radio observations. This implies that either these nebulae are filled with dense clumps of ionized gas which are not resolved in the radio maps, or that the S III zone is confined to the small, dense cores found in the radio maps of all three nebulae.

Megeath, S. T.↗

Inference of subsurface thermohaline structure from fields measurable by satellite

Satellites now provide global measurements of the ocean's surface height and temperature. Ocean climatologies for the northwest Pacific and northwest Atlantic Oceans that relate sea surface height, sea surface temperature, day of the year, latitude, and longitude to temperature and salinity profiles were produced using least-squares regression. These analyses use over 33,000 profiles of historical temperature and salinity data and are considerably streamlined and compacted by expressing each profile in terms of empirical orthogonal functions. Evaluations and error analyses of the climatologies, including a comparison to the navy's Generalized Digital Environmental Model, were performed and differences between the regions are discussed. Two sample vertical sections are shown to be closely reproduced with the climatologies. Climatologies based on surface height and temperature are found to offer considerable improvement over climatologies based only on position.

Carnes, Michael R.↗

Thermohydraulic experiments on a supercritical carbon dioxide–air microtube heat exchanger

Heat exchangers are critical components in supercritical CO 2 Brayton cycles and provide necessary heat input, recovery, and dissipation. Tubular heat exchangers with unconventionally small tube sizes (tube diameters less than 5 mm) are promising components for supercritical CO 2 cycles and potentially provide excellent structural stability with wide scope of application. This paper provides essential design and fabrication guidelines for a compact shell-and-tube heat exchanger with microtubes (with an inner diameter equal to 1.75 mm). A heat exchanger test rig is used to evaluate the thermohydraulic performance of this heat exchanger with supercritical CO 2 and air as working fluids. Thermohydraulic data are reported for more than forty sets of experiments with varying Reynolds numbers for shell and tube flows. Critical performance metrics are calculated from the data and compared with predictions from a previously described numerical model. The average deviations between the experimental and model results fall within 10% for all critical metrics. This excellent agreement validates the numerical model for supercritical CO 2 heat exchanger optimization and scale-up.

42 ENGINEERING↗

Locating the missing large-scale emission in the jet of M87* with short EHT baselines

In very-long baseline interferometric arrays, nearly co-located stations probe the largest scales and typically cannot resolve the observed source. In the absence of a large-scale structure, closure phases constructed with these stations are zero and, since they are independent of station-based errors, they can be used to probe data issues. Here, we show how these trivial closure phases become nonzero with a brightness distribution on smaller scales than their short baseline would suggest. When applied to sources that are made up of a bright compact and large-scale diffuse component, the trivial closure phases directly measure the centroid relative to the compact source and higher-order image moments. We present a technique to measure these image moments with minimal model assumptions and validate it on synthetic Event Horizon Telescope (EHT) data. We then apply this technique to 2017 and 2018 EHT observations of M87* and find a weak preference for extended emission in the direction of the large-scale jet. We also apply it to 2021 EHT data and measure the source centroid about 1 mas northwest of the compact ring, which is consistent with the jet observed at lower frequencies.

79 ASTRONOMY AND ASTROPHYSICS↗

Compositing and Characterization of SE Quadrant Waste Exemplars

This report outlines the experimental investigation and characterization of transport properties in Hanford SE quadrant High-Level Waste (HLW). The goal of the study was to establish baseline behaviors of bulk composite rheology and settling characteristics to facilitate waste treatment process design for the Waste Treatment and Immobilization Plant (WTP) and avoid waste conditions and properties favorable to bubble cascade gas release events. The study focused on two major objectives: 1) identifying, obtaining, and preparing relevant Hanford tank waste samples for evaluation and 2) quantifying the “as-received” rheology and transport properties of the samples. Twenty-three centrifuged core segments originating from tanks AN-101, AN-106, and AW-105 were selected based on compositional relevance to SE quadrant PUREX cladding waste. These materials were composited into five waste composites enriched with target analytes: aluminum (Al), iron (Fe), phosphate (PO 4 ), uranium (U), and zirconium (Zr). Physical property and transport testing examined particle size distributions, bulk densities, settling behaviors, rheological properties, shear strengths, and just-suspended mixing speeds (NJS). Testing revealed two distinct composite classifications based on rheological characteristics: non-Newtonian composites (Fe and PO 4 ) and Newtonian composites (Al, U, and Zr). The Fe and PO 4 composites exhibited slow settling rates and reduced mobilization proclivity, attributable to strong particle-particle interactions and the formation of yield structures within non-Newtonian slurries. In contrast, the Al, U, and Zr composites displayed rapid settling and dense compaction behaviors, indicative of minimal structuring and interactions. Shear strengths for all composites were generally low relative to prior studies of SE quadrant waste, with only the U composite showing elevated strength approaching values reported in previous literature. Repeat shear strength measurements revealed contributions from dense granular material in the U composite and stronger cohesive properties in the Al composite. Settling data highlighted hindered settling behavior, with rates falling more than one order of magnitude below estimates based on Stokes’ law and rate decreasing as composite UDS content increased. NJS testing demonstrated different mobilization behaviors between cohesive and granular composites. The Fe composite required the highest mixing rate for resuspension, while the Al composite was the easiest to resuspend. Comparison of measured NJS against predictions made using the Zwietering correlation suggests non-Newtonian behavior alters resuspension mechanics, rendering non-Newtonian systems more stable against resuspension lift forces relative to their granular counterparts.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Commutative Algebra Modeling in Materials Science – A Case Study on Metal–Organic Frameworks (MOFs)

Metal-organic frameworks (MOFs) are a class of important crystalline and highly porous materials whose hierarchical geometry and chemistry hinder interpretable predictions in materials properties. Commutative algebra is a branch of abstract algebra that has been rarely applied in data and material sciences. We introduce the first ever commutative algebra modeling and prediction in materials science. Specifically, category-specific commutative algebra (CSCA) is proposed as a new framework for MOF representation and learning. It integrates element-based categorization with multiscale algebraic invariants to encode both local coordination motifs and global network organization of MOFs. These algebraically consistent, chemically aware representations enable compact, interpretable, and data efficient modeling of MOF properties such as Henry’s constants and uptake capacities for common gases. Compared to traditional geometric and graph-based approaches, CSCA achieves comparable or superior predictive accuracy while substantially improving interpretability and stability across data sets. By aligning commutative algebra with the chemical hierarchy, the CSCA establishes a rigorous and generalizable paradigm for understanding structure and property relationships in porous materials and provides a nonlinear algebra-based framework for data-driven material discovery.

Khaemba, Caleb S.↗

Evidence of Spin-Interference Effects in Exclusive 𝐽/𝜓 → 𝑒 + ⁢𝑒 − Photoproduction in Ultraperipheral Heavy-Ion Collisions

Here, we report the first evidence of spin interference in exclusive 𝐽/𝜓 → 𝑒 + ⁢𝑒 − photoproduction in ultraperipheral heavy-ion collisions at STAR at $\sqrt{𝑠_{𝑁⁢𝑁}}$ = 200 GeV. In Au + Au collisions, a negative cos⁡(2⁢𝜙) modulation is found for 𝑝 𝑇 < 120 MeV/𝑐 with a significance of 3.2⁢𝜎, while the isobar data (Ru + Ru, Zr + Zr) show a consistent negative modulation with a significance of 1.9⁢𝜎, opposite in sign to that in 𝜌 0 → 𝜋 + ⁢𝜋 − photoproduction. This establishes for the first time that the interference sign is controlled by the spin structure of the final-state daughters, resolving the ambiguity present in the all-boson 𝜌 0 channel. The compact 𝐽/𝜓 probes gluon distributions at perturbative scales, resulting in a weaker modulation and providing stringent constraints on color glass condensate calculations. These findings demonstrate that spin-dependent interference in heavy vector mesons provides a new, experimentally accessible handle on gluon structure beyond traditional cross-section measurements.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗