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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

A scalable variational method for estimating the latent infection-rate field of an outbreak

In this paper, we explore whether the infection-rate of a disease can serve as a robust monitoring variable in epidemiological surveillance algorithms. The infection-rate is dependent on population mixing patterns that do not vary erratically day-to-day; in contrast, daily case-counts used in contemporary surveillance algorithms are corrupted by reporting errors. The technical challenge lies in estimating the latent infection-rate from case-counts. Here we devise a Bayesian method to estimate the infection-rate across multiple adjoining areal units, and then use it, via an anomaly detector, to discern a change in epidemiological dynamics. We extend an existing model for estimating the infection-rate in an areal unit by incorporating a Markov random field model, so that we may estimate infection-rates across multiple areal units, while preserving spatial correlations observed in the epidemiological dynamics. To carry out the high-dimensional Bayesian inverse problem, we develop an implementation of mean-field variational inference specific to the infection model and integrate it with the random field model to incorporate correlations across counties. The method is tested on estimating the COVID-19 infection-rates across all 33 counties in New Mexico using data from the summer of 2020, and then employing them to detect the arrival of the Fall 2020 COVID-19 wave. We perform the detection using a temporal algorithm that is applied county-by-county. We also show how the infection-rate field can be used to cluster counties with similar epidemiological dynamics.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Mobility and threshold voltage extraction in transistors with gate-voltage-dependent contact resistance

The mobility of emerging (e.g., two-dimensional, oxide, organic) semiconductors is commonly estimated from transistor current-voltage measurements. However, such devices often experience contact gating, i.e., electric fields from the gate modulate the contact resistance during measurements, which can lead conventional extraction techniques to estimate mobility incorrectly even by a factor >2. Although this error can be minimized by measuring transistors at high gate-source bias |V gs |, this regime is often inaccessible in emerging devices that suffer from high contact resistance or early gate dielectric breakdown. Here, we propose a method of extracting mobility in transistors with gate-dependent contact resistance that does not require operation at high |V gs |, enabling accurate mobility extraction even in emerging transistors with strong contact gating. Our approach relies on updating the transfer length method (TLM) and can achieve <10% error even in regimes where conventional techniques overestimate mobility by >2×

36 MATERIALS SCIENCE↗
DOE OSTI2026

Feynman diagrams for matter wave interferometry

We introduce a new theoretical framework based on Feynman diagrams to compute phase shifts in matter wave interferometry. The method allows for analytic computation of higher order quantum corrections, beyond the traditional semi-classical approximation. These additional terms depend on the finite size of the initial matter wavefunction and/or have higher order dependence on ℏ. We apply the method to compute the response of matter wave interferometers to power law potentials and potentials with an arbitrary spatial dependence. The analytic expressions are validated by comparing to numerical simulations, and estimates are provided for the scale of the quantum corrections to the phase shift response to the gravitational field of the earth, anharmonic trapping potentials, and gravitational fields from local proof masses. We also find that for certain experimentally feasible parameters, these corrections are large enough to be measured and could lead to systematic errors if they are not mitigated. We find that to first order in a spatially dependent potential, quantum corrections vanish when the initial matter wavepacket has spherical symmetry and the potential satisfies Laplace's equation. We anticipate these quantum corrections will be especially important for trapped matter wave interferometers and for free-space matter wave interferometers in the presence of proof masses. These interferometers are becoming increasingly sensitive tools for mobile inertial sensing, gravity surveying, tests of gravity and its interplay with quantum mechanics, and searches for dark energy.

Glick, Jonah [Northwestern U.; Fermilab] (ORCID:00↗
DOE OSTI2024

Modelling Beam Loss Within the LANSCE Proton Storage Ring

Several upgrades are being considered for the proton storage ring (PSR) at the Los Alamos Neutron Science Center (LANSCE) to reduce beam loss and thereby reduce the cooldown period of the PSR following a beam run. First, we have considered an increased beam pipe diameter would reduce beam loss due to beam scraping caused by misalignments and tuning errors. However, this would require increased pole-to-pole gap height within the dipoles and quadrupoles, which would change their effective length and alter their fringe fields. The effect of different magnet gaps on the beam optical parameters and on beam loss was studied using the simulation codes MAD-X and PyORBIT. Second, we are developing a detailed particle tracking model within the framework of the simulation package General Particle Tracer (GPT) for the PSR H - stripping system. This model will be used to study the effect of the stripper foil parameters (position, composition, areal density, depth, etc.) on first-turn losses, where most of the observed beam loss and emittance growth occurs due to foil scattering, foil stripping, and Lorentz stripping. The model implements C++ custom elements created to model foil scattering, foil stripping, and Lorentz stripping, as these are not built-in features of GPT. The preliminary results of the MAD-X and PyORBIT simulations, as well as the GPT simulation model, is described in this tech note.

43 PARTICLE ACCELERATORS↗
DOE OSTI2026

Hourly PM 2.5 Estimates across California from 2018 to 2023

This study presents a new data set of hourly PM 2.5 concentrations across California from 2018 to 2023 at a three-kilometer resolution. This data set was developed by assimilating observations from PurpleAir and the U.S. EPA Air Quality System monitors into wildfire smoke forecasts from the High-Resolution Rapid Refresh Smoke (HRRR-Smoke) model using the Gridpoint Statistical Interpolation (GSI) three-dimensional variational data assimilation framework. Archived forecasts of modeled wildfire smoke PM 2.5 from HRRR-Smoke create the background field for assimilation, which is then corrected using surface observations of total PM 2.5 . The resulting reanalysis from GSI provides an estimate of total PM 2.5 that minimizes error from both the observational and the model data. Validation results indicate strong performance, with monthly R 2 values ranging from 0.73 to 0.91 across the six-year data set, comparable to other PM 2.5 data sets. Case studies are presented for three major fire events, the 2018 Camp Fire, 2019 Kincade Fire, and 2020 Lightning Complex Fires to demonstrate the data set’s fidelity in resolving plume dynamics and local exposure patterns. Root-mean-squared error averaged over each month scales with average PM 2.5 concentrations, resulting in a low error under typical conditions but higher absolute errors during extreme smoke events. This is the first long-term, hourly PM 2.5 data set of its kind for California and enables the generation of subdaily exposure metrics, such as peak hourly concentrations, exceedance durations, and time-of-day exposure peaks. The novelty and strong validation of this data set make it a compelling resource for future studies on the impact and significance of subdaily PM 2.5 exposure.

PM2.5↗
DOE OSTI2024

Thermally anisotropic building envelope for thermal management: finite element model calibration using field evaluation data

The thermally anisotropic building envelope (TABE) is an active building envelope that redistributes thermal loads in response to weather conditions and building energy demand. Conductive layers throughout the TABE distribute low-grade heat among hydronic loops, altering heat flow direction and intensity. Finite element models of TABE roof and wall panels were developed and calibrated using field evaluation data. The calibration results showed that heat flux differences between the experimental data and finite element models averaged –0.42% and 3.57%, with a maximum mean square error of 1.78 and 3.96 for roof and wall panels, respectively. A reduction in heat flux from the environment to the building living space over the entire testing period (weeks in July/August) was found to be 85% for roof panels and 335% (load reversed) for wall panels. Finally, these results indicate TABE can effectively harness low-grade thermal energy sources to achieve high energy efficiency and promote demand-side management.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2025

Lossy Compression: An Online Multi-Stage Technology for High-Fidelity Synchro- Waveform Measurements

Effective real-time monitoring and analysis of distributed grids necessitate the use of synchro-waveform measurements, which capture almost all high-frequency disturbances and transient phenomena. However, due to limitations in high-speed measurements and network bandwidth, it is challenging to transfer all high-fidelity synchro-waveforms losslessly and successfully. To cope with these challenges, a hybrid-based online multi-stage compression algorithm is proposed to significantly improve the compression efficiency for synchro-waveform measurements. Initially, the multiple discrete Wavelet transformation is deployed to deconstruct the waveform components. The delta encoding is further developed to decrease the magnitude. In conjunction with the Lempel-Ziv-Markov chain, the hybrid compression algorithm is implemented to achieve real-time compression for the synchro-waveform measurements. Moreover, an innovative error index that synergizes the time and frequency domain error and correlation is formulated to evaluate the waveform distortion. By integrating compression ratio, suitable parameters can be optimally selected. Finally, the simulation, laboratory experiments, as well as field tests across a spectrum of sampling frequencies and time intervals are conducted to substantiate the efficacy of the proposed method. Here, the outcomes demonstrated that a compression ratio of approximately 15.5 and 17.83 can be reached for 0.5 s and 1 s data under both offline and online scenarios, which equates to a substantial 93.5% to 94.39% reduction in data storage requirements.

High-fidelity synchro-waveform measurements↗
DOE OSTI2024

Blue Canyon Dome Emplacement Artifacts

The Blue Canyon Dome (BCD) experiments are a series of intermediate scale subsurface chemical explosions designed to explore the geophysical relationship between scaled yields and formation damage. Phase 2 of this experiment involved explosions designed to evaluate the effect of damage, demonstrating the effect of geologic features and previous damage on the near field seismic signatures, not just in amplitude, but also in spectral content. Based on the emplacement effect on the seismic signature, the moment-based yield estimates showed error between 10s-1000s of percent. This report details an alternative approach to emplacement-based filtering techniques of the seismic signatures to improve yield estimates for explosions in damaged rock. The results will be used to develop an improved inverse yield model that leverages the information in the seismic signature for each source based on emplacement type.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗
DOE OSTI2025

Characterizing leaf-scale fluorescence with spectral invariants

Sun-induced chlorophyll fluorescence (SIF) is increasingly recognized as a non-destructive probe for tracking terrestrial photosynthesis. Emerging developments in spectral invariants theory provide an innovative and efficient approach for representing SIF radiative transfer processes at the canopy scale. However, modeling leaf-scale fluorescence based on the spectral invariants properties (SIP) remains underexplored. In this study, the spectral invariants theory is employed for the first time to model the leaf-scale total, backward and forward fluorescence (leaf-SIP SIF). The leaf-SIP SIF model separates the leaf-scale radiative transfer process into two distinct components: the wavelength-dependent one associated with leaf biochemical properties, and the wavelength-independent component linked to leaf structural characteristics. The leaf structure-related effects are characterized by two spectrally invariant parameters: the photon recollision probability (p) and the scattering asymmetry parameter (q), which are parameterized using the directly measurable leaf dry matter. Evaluation against field measurements shows that the proposed leaf-SIP SIF model has a good performance, with coefficient of determination (R 2 ) of 0.89, 0.89, 0.90 and root mean squared errors (RMSE) of 1.28, 0.69, 0.74 Wm -2 µm -1 sr -1 , respectively for the total, backward, and forward fluorescence (660–800 nm). The leaf-SIP SIF model with a more concise formulation demonstrates comparable performance with the widely used Fluspect model. Further, the leaf-SIP SIF model provides a simple and efficient approach for simulating leaf-scale fluorescence, with the potential to be integrated into a unified SIP-based model framework for simulating the radiative transfer processes across the soil-leaf-canopy-atmosphere continuum.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Comprehensive assessment of metrology techniques for heliostat efficiency and performance evaluation

Concentrating solar power plants, specifically central receiver type systems and their heliostat field, are struggling with negative reputation in the USA, due to perceived underperformance and reliability issues. This is in part due to a lack of standards for performance assessment as well as overly simplified techno-economical models. A better understanding of influences and losses along the solar radiation path from the sun, across the solar collector to the receiver, increases the fidelity of heliostat efficiency assessment as well as solar field performance predictions. Such data are currently scarce and require a complete set of metrology capabilities to evaluate direct solar irradiance, sun shape, atmospheric attenuation, reflectance, collector shape, slope errors and total beam dispersion. In preparation for establishing a 3rd party metrology platform in collaboration with Sandia National Labs, NLR conducted a scoping study on available metrology. We present an extensive overview of techniques and commercial systems for each category. Our work includes an analysis to increase understanding of strengths and limitations of the many techniques used for surface shape and slope measurement. This applies to a controlled, indoor or outdoor laboratory environment assessing a single heliostat.

14 SOLAR ENERGY↗
DOE OSTI2025

Accuracy of Kohn–Sham density functional theory for warm- and hot-dense matter equation of state

We study the accuracy of Kohn–Sham density functional theory (DFT) for warm- and hot-dense matter (WDM and HDM). Specifically, considering a wide range of systems, we perform accurate ab initio molecular dynamics simulations with temperature-independent local/semilocal density functionals to determine the equations of state at compression ratios of 3x–7x and temperatures near 1 MK. We find very good agreement with path integral Monte Carlo benchmarks, while having significantly smaller error bars and smoother data, demonstrating the accuracy of DFT for the study of WDM and HDM at such conditions. In addition, using a Δ-machine learned force field scheme, we confirm that the DFT results are insensitive to the choice of exchange-correlation functional, whether local, semilocal, or nonlocal.

Suryanarayana, Phanish (ORCID:0000000151720049)↗
DOE OSTI2024

Predicting ptychography probe positions using single-shot phase retrieval neural network

Ptychography is a powerful imaging technique that is used in a variety of fields, including materials science, biology, and nanotechnology. However, the accuracy of the reconstructed ptychography image is highly dependent on the accuracy of the recorded probe positions which often contain errors. These errors are typically corrected jointly with phase retrieval through numerical optimization approaches. When the error accumulates along the scan path or when the error magnitude is large, these approaches may not converge with satisfactory result. We propose a fundamentally new approach for ptychography probe position prediction for data with large position errors, where a neural network is used to make single-shot phase retrieval on individual diffraction patterns, yielding the object image at each scan point. The pairwise offsets among these images are then found using a robust image registration method, and the results are combined to yield the complete scan path by constructing and solving a linear equation. We show that our method can achieve good position prediction accuracy for data with large and accumulating errors on the order of 10 2 pixels, a magnitude that often makes optimization-based algorithms fail to converge. For ptychography instruments without sophisticated position control equipment such as interferometers, our method is of significant practical potential.

47 OTHER INSTRUMENTATION↗
DOE OSTI2025

Applying Linear Optics from Closed Orbits Modulation for finding beam-based alignment of harmonic sextupoles

A fast and accurate beam-based alignment (BBA) method for harmonic sextupoles has been devel oped at NSLS-II using Linear Optics from Closed Orbit Modulation (LOCOM). The approach excites the beam with simultaneous sine-wave signals at two fast correctors, chosen with an appropriate phase advance to span the full betatron phase space. This strategy suppresses systematic errors from hysteresis, while additional errors from orbit drift and power-supply calibration are minimized by the short measurement time (a few minutes) and reliance solely on beam-based current-to-field conver sion of the sextupoles, with hysteresis explicitly included. Simulations indicate that Linear Optics from Closed Orbits (LOCO) combined with 0.5 mm local orbit bumps can resolve relative sextupole field offsets (∆k₂) with precision better than 10% of k₂, reflecting to beam-based alignment (BBA) accuracy finer than 50 µm. Moreover, employing machine-learning-optimized local orbit bumps en hances sextupole-induced quadrupole signals in a deterministic manner and maintains orbit stability under large sextupole strength variations (±40%). The proposed method is experimentally validated through proof-of-principle measurements at NSLS-II, demonstrating its potential as a fast, precise, and robust tool for harmonic sextupole alignment.

43 PARTICLE ACCELERATORS↗
DOE OSTI2026

Causality-respecting adaptive refinement for PINNs: enabling precise interface evolution in phase field modeling

Physics-informed neural networks (PINNs) have emerged as a powerful tool for solving physical systems described by partial differential equations (PDEs). However, their accuracy in dynamical systems, particularly those involving sharp moving boundaries with complex initial morphologies, remains a challenge. Here, this study introduces an approach combining residual-based adaptive refinement (RBAR) with causality-informed training to enhance the performance of PINNs in solving spatio-temporal PDEs. Our method employs a three-step iterative process: initial causality-based training, RBAR-guided domain refinement, and subsequent causality training on the refined mesh. Applied to the Allen-Cahn equation, a widely-used model in phase field simulations, our approach demonstrates significant improvements in solution accuracy and computational efficiency over traditional PINNs. Notably, we observe an ‘overshoot and relocate’ phenomenon in dynamic cases with complex morphologies, showcasing the method’s adaptive error correction capabilities. This synergistic interaction between RBAR and causality training enables accurate capture of interface evolution, even in challenging scenarios where traditional PINNs fail. Our framework not only resolves the limitations of uniform refinement strategies but also provides a generalizable methodology for solving a broad range of spatio-temporal PDEs. The enhanced performance of the RBAR–causality combined framework demonstrates its strong potential for advancing PINN-based modeling of physical systems characterized by complex, evolving interfaces.

Allen-Cahn equations↗
DOE OSTI2024

Electroweak three-body decays in the presence of two- and three-body bound states

Recently, formalism has been derived for studying electroweak transition amplitudes for three-body systems both in infinite and finite volumes. The formalism provides exact relations that the infinite-volume amplitudes must satisfy, as well as a relationship between physical amplitudes and finite-volume matrix elements, which can be constrained from lattice QCD calculations. This formalism poses additional challenges when compared with the analogous well-studied two-body equivalent one, including the necessary step of solving integral equations of singular functions. In this work, we provide some non-trivial analytical and numerical tests on the aforementioned formalism. In particular, we consider a case where the three-particle system can have three-body bound states as well as bound states in the two-body subsystem. For kinematics below the three-body threshold, we demonstrate that the scattering amplitudes satisfy unitarity. We also check that for these kinematics the finite-volume matrix elements are accurately described by the formalism for two-body systems up to exponentially suppressed corrections. Finally, we verify that in the case of the three-body bound state, the finite-volume matrix element is equal to the infinite-volume coupling of the bound state, up to exponentially suppressed errors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Measuring and unbiasing the BAO shift in the Ly α forest with AbacusSummit

ABSTRACT The Dark Energy Spectroscopic Instrument (DESI) places sub- per cent constraints on measurements of the Baryon Acoustic Oscillation (BAO) scaling parameters from the Ly $\alpha$ forest. However, no systematic error budget stemming from non-linearities in the three-dimensional clustering of the Ly $\alpha$ forest is included in the DESI-Ly $\alpha$ analysis. In this work, we measure the size of the shift of the BAO peak using large Ly $\alpha$ forest mocks produced on the N-body simulation suite AbacusSummit, which adopt the Fluctuating–Gunn–Peterson Approximation (FGPA). Specifically, we measure the Ly $\alpha$ autocorrelation and the Ly $\alpha$-quasar cross-correlation functions. To mitigate the noise, we adopt a linear control variates technique, reducing the error bars by a factor of up to $\sim \sqrt{50}$ on large scales. From the autocorrelation, we detect a small positive shift in radial direction of $\Delta \alpha _{\parallel }= 0.35~{{\ \rm per\ cent}}$ at the 3$\sigma$ level and virtually no shift in the transverse direction, $\alpha _\perp$. From the cross-correlation, we see a similar shift to $\Delta \alpha _\parallel$, albeit with larger error bars, and a small negative shift, $\Delta \alpha _{\perp }=\sim$0.25 per cent, at the 2$\sigma$ level. We also make a connection with the Ly $\alpha$ forest effective field theory (EFT) framework and find that the one-loop EFT power spectrum yields unbiased measurements of the BAO shift parameters in radial and transverse direction for Ly $\alpha$ auto- and the Ly $\alpha$-quasar cross-correlation measurements. When using the one-loop EFT framework, we find that we can recover the BAO parameters without a shift, which has important implications for future Ly $\alpha$ forest analyses based on EFT. This work paves the way for novel full-shape analyses of the currently observing DESI and future surveys such as the PFS, WEAVE-QSO, and 4MOST.

Hadzhiyska, Boryana↗
DOE OSTI2024

PyOED: An Extensible Suite for Data Assimilation and Model-Constrained Optimal Design of Experiments

This article describes PyOED, a highly extensible scientific package that enables developing and testing model-constrained optimal experimental design (OED) for inverse problems. Specifically, PyOED aims to be a comprehensive Python toolkit for model-constrained OED. The package targets scientists and researchers interested in understanding the details of OED formulations and approaches. It is also meant to enable researchers to experiment with standard and innovative OED technologies with a wide range of test problems (e.g., simulation models). OED, inverse problems (e.g., Bayesian inversion), and data assimilation (DA) are closely related research fields, and their formulations overlap significantly. Thus, PyOED is continuously being expanded with a plethora of Bayesian inversion, DA, and OED methods as well as new scientific simulation models, observation error models, and observation operators. These pieces are added such that they can be permuted to enable testing OED methods in various settings of varying complexities. The PyOED core is completely written in Python and utilizes the inherent object-oriented capabilities; however, the current version of PyOED is meant to be extensible rather than scalable. Specifically, PyOED is developed to “enable rapid development and benchmarking of OED methods with minimal coding effort and to maximize code reutilization.” This article provides a brief description of the PyOED layout and philosophy and provides a set of exemplary test cases and tutorials to demonstrate the potential of the package.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Live cell imaging of cellular dynamics in poplar wood using computational cannula microscopy

This study presents significant advancements in computational cannula microscopy for live imaging of cellular dynamics in poplar wood tissues. Leveraging machine-learning models such as pix2pix for image reconstruction, we achieved high-resolution imaging with a field of view of 55µm using a 50µm-core diameter probe. Our method allows for real-time image reconstruction at 0.29 s per frame with a mean absolute error of 0.07. We successfully captured cellular-level dynamics in vivo , demonstrating morphological changes at resolutions as small as 3µm. We implemented two types of probabilistic neural network models to quantify confidence levels in the reconstructed images. This approach facilitates context-aware, human-in-the-loop analysis, which is crucial for in vivo imaging where ground-truth data is unavailable. Using this approach we demonstrated deep in vivo computational imaging of living plant tissue with high confidence (disagreement score ⪅0.2). This work addresses the challenges of imaging live plant tissues, offering a practical and minimally invasive tool for plant biologists.

Ingold, Alexander (ORCID:0009000752380016)↗