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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Simple, efficient and open-source CRISPR/Cas9 strategy for multi-site genome editing in Populus tremula × alba

Although the CRISPR/Cas9 system has been successfully used for crop breeding, its application remains limited in forest trees. Here, we describe an efficient gene editing strategy for hybrid poplar, (Populus tremula × alba INRA clone 717-1B4) based on the Golden Gate MoClo cloning. To test the system efficiency for generating single gene mutants, two single guide RNAs (sgRNAs) were designed and incorporated into the MoClo Tool Kit level 2 binary vector with the Cas9 expression cassette to mutate the SHORT ROOT (SHR) gene. Moreover, we also tested its efficiency for introducing mutations in two genes simultaneously by expressing one sgRNA targeting a single site of the YUC4 gene and the other sgRNA targeting the PLT1 gene. For a robust evaluation of the approach, we repeated the strategy to target the LBD12 and LBD4 genes simultaneously, using an independent construct. We generated hairy roots by Agrobacterium rhizogenes-mediated leaf transformation. Sequencing results confirmed the CRISPR/Cas9-mediated mutation in the targeted sites of PtaSHR. Biallelic and homozygous knockout mutations were detected. A deletion spanning both target sites and small insertions/deletions were the most common mutations. Out of the 22 SHR alleles sequenced, 21 were mutated. The phenotype’s characterization showed that transgenic roots with biallelic mutations for the SHR gene lacked a defined endodermal single cell layer, suggesting a conserved gene function similar to its homolog in Arabidopsis Arabidopsis thaliana (L.) Heynh. Sequencing results also revealed the high efficiency of the system for generating double mutants. Biallelic mutations for both genes in the yuc4/plt1 and lbd12/lbd4 roots were detected in three (yuc4/plt1) and two (lbd12/lbd4) out of four transgenic roots evaluated. A small deletion or a single nucleotide insertion at the single target site was the most common mutations. This CRISPR/Cas9 strategy arises as a rapid, simple and standardized gene-editing tool to evaluate the gene role in essential developmental programs such as radial cell differentiation of poplar roots.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Perturbation of tonoplast sucrose transport alters carbohydrate utilization for seasonal growth and defense metabolism in coppiced poplar

Abstract Nonstructural carbohydrate reserves of stems and roots underpin overall tree fitness and productivity under short-rotation management practices such as coppicing for bioenergy. While sucrose and starch comprise the predominant stem carbohydrate reserves of Populus, utilization for fitness and agricultural productivity is understood primarily in terms of starch turnover. The tonoplast sucrose transport protein SUT4 modulates sucrose export from source leaves to distant sinks during photoautotrophic growth, but the possibility of its involvement in remobilizing carbohydrates from storage organs during heterotrophic growth has not been explored. Here, we used PtaSUT4-knockout mutants of Populus tremula × P. alba (INRA 717-1B4) in winter (cool) and summer (warm) glasshouse coppicing experiments to assess SUT4 involvement in reserve utilization. Conditions preceding and supporting summer sprouting were considered favorable for growth, while those preceding and supporting cool temperature sprouting were suboptimal akin to conditions associated with coppicing as generally practiced. Epicormic bud emergence was delayed in sut4 mutants following lower temperature ‘winter’ but not summer coppicing. Winter xylem hexose increases were observed in control but not in sut4 stumps after coppicing. The magnitude of starch and sucrose reserve depletion was similar in control and sut4 stumps during the winter and did not explain the sprouting and xylem hexose differences. However, winter maintenance costs appeared higher in sut4 based partly on Krebs cycle intermediate levels. In control plants, bark accrual of abundant defense metabolites, including salicinoids and condensed tannins, was higher in summer than in winter, but this increase of summer defense allocations was attenuated in sut4 mutants. Temperature-sensitive trade-offs between growth and other priorities may therefore depend on SUT4 in Populus.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Invariant-mass spectrum of O 11

The invariant-mass distribution of O 11 fragments formed in two-neutron-knockout reactions with a O 13 projectile and Be 9 target has been also examined. Gating on events where the C 9 decay fragments produced following 2 p emission are recoiled transversely in the projectile's frame improves the overall invariant-mass resolution. The observed peak is now shown to have contributions from at least two O 11 levels, in contradiction with the suggestion of Fortune [ Phys. Rev. C 99 , 051302(R) (2019) ]. The data, yet, do not differentiate between the ground-state properties obtained by the Gamow coupled-channels calculation and the prompt 2 p -decay model of Fortune. The ground-state 2 p -decay energy is 4.25(6) MeV in a two-level fit to the data, but lower values are possible if more states contribute to the observed spectrum, as suggested in the previous analysis.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Shell structure of 43 S and collapse of the N = 28 shell closure

The single-particle structure of the N = 27 isotones provides insights into the shell evolution of neutron-rich nuclei from the doubly-magic 48 Ca toward the drip line. 43 S was studied employing the one-neutron knockout reaction from a radioactive 44 S beam. Using a combination of prompt and delayed γ-ray spectroscopy the level structure of 43 S was clarified. Momentum distributions were analyzed and allowed for spin and parity assignments. The deduced spectroscopic factors show that the 44 S ground-state configuration has a strong intruder component. Here, the results were confronted with shell model calculations using two effective interactions. General agreement was found between the calculations, but strong population of states originating from the removal of neutrons from the 2p 3/2 orbital in the experiment indicates that the breakdown of the N = 28 magic number is more rapid than the theoretical calculations suggest.

39 ≤ A ≤ 58↗
DOE OSTI2021

Neutron-neutron scattering length from the 6 He(p,pα)nn reaction

We propose a novel method to measure the neutron-neutron scattering length using the 6 He(p,pα)nn reaction in inverse kinematics at high energies. The method is based on the final-state interaction (FSI) between the neutrons after the sudden knockout of the α particle. We show that the details of the neutron-neutron relative-energy distribution allow for a precise extraction of the s-wave scattering length. Here, we present the state of the art in regard to the theory of this distribution. The distribution is calculated in two steps. First, we calculate the ground-state wave function of 6 He as a αnn three-body system. For this purpose we use Halo effective field theory, which also provides uncertainty estimates for the results. We compare our results at this stage to model calculations done with the computer code face. In a second step we determine the effects of the nn FSI using the nn t-matrix. We compare these FSI results to approximate FSI approaches based on standard FSI enhancement factors. While the final distribution is sensitive to the nn scattering length, it depends only weakly on the effective range. Throughout we emphasize the impact of theoretical uncertainties on the neutron-neutron relative-energy distribution, and discuss the extent to which those uncertainties limit the extraction of the neutron-neutron scattering length from the reaction 6 He(p,pα)nn.

6 ≤ A ≤ 19↗
DOE OSTI2021

In-beam γ-ray spectroscopy of 68 Fe from charge exchange on 68 Co projectiles

Excited states in the neutron-rich nucleus 68 Fe were populated using a 9 Be( 68 Co, 68 Fe + γ)X charge-exchange reaction at 95 MeV/u. The new γ-ray transitions reported here for the first time complement data from β-decay studies and nucleon knockout reactions. In comparison to shell-model calculations with the LNPS effective interaction, two candidate states for the $6$$^{+}_{1}$ level emerge. Here, the distinct population pattern of excited states and the magnitude of the cross section, σ inc = 0.51(6) mb, make this reaction a promising one for future in-beam γ -ray spectroscopy. Reaction calculations with nuclear structure input from a new, locally optimized Hamiltonian, f7j4a, together with general considerations for heavy-ion-induced charge-exchange reactions appear consistent with most of the observations, although challenges remain.

59 ≤ A ≤ 89↗
DOE OSTI2021

Quenching of single-particle strengths in direct reactions

A discrepancy in the asymmetry dependence of spectroscopic factors extracted with different reaction probes calls into question whether the corresponding reaction models are properly understood. In this work, we present extracted spectroscopic factors from the Ar 46 , 34 ( p , d ) Ar 45 , 33 transfer reactions in inverse kinematics at a beam energy of 70 MeV/nucleon. The results are consistent with previous measurements of these reactions at a lower beam energy [Lee et al. , Phys. Rev. Lett. 104 , 112701 (2010) ], indicating that the transfer reaction is a reliable probe for the nuclear structure of exotic nuclei across a wide energy range. Results from a large body of transfer reaction measurements, ( p , p N ) measurements, and theoretical nuclear structure studies make a compelling case for much weaker asymmetry dependence than what is observed with single-nucleon knockout reactions on beryllium or carbon targets.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Short-range correlation physics at low renormalization group resolution

Recent experiments have succeeded in isolating processes for which short-range correlation (SRC) physics is dominant and well accounted for by SRC phenomenology. But an alternative and compelling picture emerges from renormalization group (RG) evolution to low RG resolution. At high RG resolution, SRCs are identified as components in the nuclear wave function with relative pair momenta greater than the Fermi momentum. Scale separation results in wave-function factorization that can be exploited with phenomenologies such as the generalized contact formalism or the low-order correlation operator approximation. Evolution to lower resolution shifts SRC physics from nuclear structure to the reaction operators without changing the measured observables. We show how the features of SRC phenomenology manifested at high RG resolution are cleanly identified at low RG resolution using simple two-body operators and local-density approximations with uncorrelated wave functions, all of which can be systematically generalized. We verify that the experimental consequences to date follow directly at low resolution from well-established properties of nucleon-nucleon interactions such as the tensor force. Thus the RG reconciles the contrasting pictures of the same experiment and shows how to get correct results using wave functions without SRC components. Finally, our demonstration has implications for the analysis of knockout reactions for which SRC physics is not cleanly isolated.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Investigation of the ground-state spin inversion in the neutron-rich Cl 47 , 49 isotopes

A first γ -ray study of Cl 47 , 49 spectroscopy was performed at the Radioactive Isotope Beam Factory with Ar 50 projectiles at 217 MeV/nucleon, impinging on the liquid hydrogen target of the MINOS device. Prompt deexcitation γ rays were measured with the NaI(Tl) array DALI2 + . Through the one-proton knockout reaction Ar 50 ( p , 2 p ) , a spin assignment could be determined for the low-lying states of Cl 49 from the momentum distribution obtained with the SAMURAI spectrometer. A spin-parity J π = 3 / 2 + is deduced for the ground state of Cl 49 , similar to the recently studied N = 32 isotope K 51 . The evolution of the energy difference E ( 1 / 2 1 + ) - E ( 3 / 2 1 + ) is compared to state-of-the-art theoretical predictions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Spectroscopic factors in dripline nuclei

Single-nucleon knockout reaction studies of the proton-dripline nuclei 9 C and 13 O suggest an appreciable suppression of spectroscopic factors. In this work, we calculate the one-neutron and one-proton spectroscopic factors for the mirror pair 9 C – 9 Li and 13 O using two variants of the continuum shell model: the complex-energy Gamow shell model and the real-energy shell model embedded in the continuum. Furthermore, our results indicate that the continuum effects strongly suppress the spectroscopic factors of well-bound orbits in the dripline systems but have less impact on the spectroscopic factors of weakly bound states.

6 ≤ A ≤ 19↗
DOE OSTI2022

Two-proton decay from α-cluster states in 10 C and 11 N

Two-proton decay from excited states in 10 C and 11 N has been characterized from an analysis of the 2p + 2α and 3p + 2α exit channels. Data from four previously published invariant-mass studies associated with inelastic excitation, multinucleon knockout, and neutron pickup reactions have been considered. A rotational band in 10 C was identified built on the second 0 + state which has strong α-cluster molecular structure. The members of this band were tentatively identified up to J π = 4 + and all identified states have a prompt 2p decay branch. The spins of the 0 + and 2 + members were deduced from comparisons of the momentum correlations in their 2p branches to those from known 2p emitters. The 2 + and the tentative 4 + members are both above the α threshold and exhibit large reduced decay widths for α emission. This band exhibits a similar moment of inertia to its analog in the mirror nucleus 10 Be. Evidence is also presented for a molecular band in 11 N built on the second 3/2 – state which 2p decays. Furthermore, tentative members of this band have been assigned up to J π = 9/2 – and their excitation energies also match their likely analogs in the mirror nucleus 11 Be.

6 ≤ A ≤ 19↗
DOE OSTI2022

Effective field theory of pairing rotations

Pairing rotations are the low-energy excitations of finite superfluid systems, connecting systems that differ in their number of Cooper pairs. This paper presents a model-independent derivation of pairing rotations within an effective theory that exploits the emergent breaking of U(1) phase symmetries. The symmetries are realized nonlinearly and the Nambu-Goldstone modes depend only on time because the system is finite. Semimagic nuclei exhibit pairing rotational bands while the pairing spectrum becomes an elliptical paraboloid for open-shell nuclei. Model-independent relations between double charge-exchange reactions and α particle capture or knockout in open-shell nuclei are in analogy to the pair transfer reactions in a single superfluid. Odd semimagic nuclei are described by coupling a fermion to the superfluid. Furthermore, the leading-order theories reproduce data for pairing rotational bands within uncertainty estimates.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

Exploiting dissipative reactions to perform in-beam γ-ray spectroscopy of the neutron-deficient isotopes 38,39 Ca

The neutron-deficient Ca isotopes continue to attract attention due to their importance for testing isospin symmetry and their relevance in capture reactions of interest for nova nucleosynthesis and the shape of light curves in Type I x-ray bursts. To date, spectroscopic information on 38,39 Ca is largely limited to data on lower-spin excited states. Here, we report in-beam γ-ray spectroscopy of complementary higher-spin, complex-structure states in 39 Ca populated in fast-beam-induced, momentum-dissipative processes leading to neutron pickup onto excited configurations of the projectile, 9 Be( 38 Ca*, 39 Ca + γ)X. Such a dissipative reaction was recently characterized for the case of inelastic scattering of 38 Ca off 9 Be, 9 Be( 38 Ca, 38 Ca + γ)X. Additional data and discussion on the nuclear structure of 38 Ca is also presented. Furthermore, an explanation for the more-complex-structure states, populated with small cross sections in one-nucleon knockout reactions, and observed in the tails of their longitudinal momentum distributions, is also offered.

20 ≤ A ≤ 38↗
DOE OSTI2024

Reduction of spectroscopic overlap across the Z = 8 shell in neutron-rich nuclei

The recent discovery and spectroscopic measurements of 27 O and 28 O suggests the disappearance of the N = 20 shell structure in these neutron-rich oxygen isotopes. We measured one- and two-proton removal cross sections from 27 F and 29 N, respectively, extracting spectroscopic factors and comparing them to shell model overlap functions coupled with eikonal reaction model calculations. The invariant mass technique was used to reconstruct the two-body ( 24 O + n) and three-body ( 24 O + 2n) decay energies from knockout reactions of 27 F (106.2 MeV/u) and 29 Ne (112.8 MeV/u) beams impinging on a 9 Be target. The one-proton removal from 27 F strongly populated the ground state of 26 O and the extracted cross section of $3.4^{+0.3}_{-1.5}$ mb agrees with eikonal model calculations that are normalized by the shell model spectroscopic factors and account for the systematic reduction factor observed for single nucleon removal reactions within the models used. For the two-proton removal reaction from 29 Ne an upper limit of 0.08 mb was extracted for populating states in 27 O decaying though the ground state of 26 O. The measured upper limit for the population of the ground state of 26 O in the two-proton removal reaction from 29 Ne indicates a significant difference in the underlying nuclear structure of 27 F and 29 Ne.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Establishing the Maximum Collectivity in Highly Deformed N = Z Nuclei

The lifetimes of the first excited 2 + states in the N = Z nuclei 80 Zr, 78 Y, and 76 Sr have been measured using the γ-ray line shape method following population via nucleon-knockout reactions from intermediate-energy rare-isotope beams. The extracted reduced electromagnetic transition strengths yield new information on where the collectivity is maximized and provide evidence for a significant, and as yet unexplained, odd-odd vs even-even staggering in the observed values. As a result, the experimental results are analyzed in the context of state-of-the-art nuclear density-functional model calculations.

59 ≤ A ≤ 89↗
DOE OSTI2022

Quenching of Single-Particle Strength in A=15 Nuclei

Here, absolute cross sections for the addition of s- and d-wave neutrons to 14 C and 14 N have been determined simultaneously via the (d,p) reaction at 10 MeV/u. The difference between the neutron and proton separation energies, ΔS, is around -20 MeV for the 14 C+n system and +8 MeV for 14 N+n. The population of the 1s 1/2 and 0d 5/2 orbitals for both systems is reduced by a factor of approximately 0.5 compared with the independent single-particle model, or about 0.6 when compared with the shell model. This finding strongly contrasts with results deduced from intermediate-energy knockout reactions between similar nuclei on targets of 9 Be and 12 C. The simultaneous technique used removes many systematic uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

Collapse of Nuclear Collectivity along the 𝑁 = 𝑍 Line

The lifetime of the 𝐽 𝜋 = 2 + state in the self-conjugate 88 Ru nucleus has been determined in an experiment performed using rare-isotope beams provided by the new Facility for Rare Isotope Beams. This is the heaviest 𝑁 = 𝑍 nucleus for which such a measurement has been achieved. 88 Ru was populated by both one-neutron knockout and charge-exchange reactions, and the lifetime of 14.3$^{+2.5}_{−3.4}$ ps was determined using the triple-foil plunger technique. The extracted electromagnetic transition strength shows that the quadrupole collectivity has dropped significantly compared with the highly deformed 𝑁 = 𝑍 region around 𝐴 ∼ 80. These results are compared with state-of-the-art large-scale shell-model and discrete nonorthogonal shell-model calculations. The theoretical calculations indicate a moderate triaxial deformation and suggest that low-lying states in this nucleus are no longer dominated by strong many-particle many-hole excitations, unlike the lighter, highly deformed 𝑁 = 𝑍 nuclei nearby.

59 ≤ A ≤ 89↗
DOE OSTI2020

The essential effector SCRE1 in Ustilaginoidea virens suppresses rice immunity via a small peptide region

Summary The biotrophic fungal pathogen Ustilaginoidea virens causes rice false smut, a newly emerging plant disease that has become epidemic worldwide in recent years. The U. virens genome encodes many putative effector proteins that, based on the study of other pathosystems, could play an essential role in fungal virulence. However, few studies have been reported on virulence functions of individual U. virens effectors. Here, we report our identification and characterization of the secreted cysteine‐rich protein SCRE1, which is an essential virulence effector in U. virens . When SCRE1 was heterologously expressed in Magnaporthe oryzae , the protein was secreted and translocated into plant cells during infection. SCRE1 suppresses the immunity‐associated hypersensitive response in the nonhost plant Nicotiana benthamiana . Induced expression of SCRE1 in rice also inhibits pattern‐triggered immunity and enhances disease susceptibility to rice bacterial and fungal pathogens. The immunosuppressive activity is localized to a small peptide region that contains an important ‘cysteine‐proline‐alanine‐arginine‐serine’ motif. Furthermore, the scre1 knockout mutant generated using the CRISPR/Cas9 system is attenuated in U. virens virulence to rice, which is greatly complemented by the full‐length SCRE1 gene. Collectively, this study indicates that the effector SCRE1 is able to inhibit host immunity and is required for full virulence of U. virens .

Zhang, Nan↗