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NASA NTRSDate not supplied

Principal Component and Machine Learning Approach to Gap Fill Hyperspectral Ocean Color Satellite Retrievals

Retrievals of ocean color properties from space are important for monitoring the health of the ocean ecosystem but such retrievals can be limited spatially due to conditions such as clouds, aerosols, and sun glint. Gap filling of ocean color retrievals is typically performed by combining retrievals from multiple satellites or temporally averaging multiple days of retrievals. Despite these techniques large gaps still exist posing challenges for near real time monitoring of events like harmful algae blooms. To address these limitations, we developed a spatial gap filling approach applying machine learning approach to hyperspectral instruments to learn how to perform an atmospheric correction under challenging retrieval conditions. In this approach a principal component analysis is used to decompose the hyperspectral measurements into spectral components that describe the scattering and absorption of the atmosphere mixed with the surface spectral signatures. The coefficients of the principal components are used to train a neural network to predict ocean color properties derived from a standard MODIS ocean color algorithm. We apply the approach to two hyperspectral UV/VIS sensors, the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can be used to estimate ocean color properties such as chlorophyll, remote sensing reflectance, and fluorescence line height. This method could be used as a gap-filling technique for the future Ocean Color Instrument (OCI) onboard upcoming NASA's Plankton, Aerosol Cloud, ocean Ecosystem (PACE) satellite to provide additional information for monitoring the health of our global oceans. Additionally, it could be applied to the first NASA and Smithsonian geostationary Tropospheric Emissions: Monitoring of Pollution (TEMPO) spectrometer to better understand diurnal variability in inland and coastal ocean ecology.

Zachary Fasnacht↗

DOE OSTI2024

Uncovering obscured phonon dynamics from powder inelastic neutron scattering using machine learning

The study of phonon dynamics is pivotal for understanding material properties, yet it faces challenges due to the irreversible information loss inherent in powder inelastic neutron scattering spectra and the limitations of traditional analysis methods. In this study, we present a machine learning framework designed to reveal obscured phonon dynamics from powder spectra. Using a variational autoencoder, we obtain a disentangled latent representation of spectra and successfully extract force constants for reconstructing phonon dispersions. Notably, our model demonstrates effective applicability to experimental data even when trained exclusively on physics-based simulations. The fine-tuning with experimental spectra further mitigates issues arising from domain shift. Analysis of latent space underscores the model’s versatility and generalizability, affirming its suitability for complex system applications. Furthermore, our framework’s two-stage design is promising for developing a universal pre-trained feature extractor. This approach has the potential to revolutionize neutron measurements of phonon dynamics, offering researchers a potent tool to decipher intricate spectra and gain valuable insights into the intrinsic physics of materials.

domain adaptation↗

DOE OSTI2018

Efficient Data-Driven Geologic Feature Characterization from Pre-stack Seismic Measurements using Randomized Machine-Learning Algorithm

Conventional seismic techniques for detecting the subsurface geologic features are challenged by limited data coverage, computational inefficiency and subjective human factors. We developed a novel data-driven geological feature characterization approach based on pre-stack seismic measurements. Our characterization method employs an efficient and accurate machine learning method to extract useful subsurface geologic features automatically. Specifically, we use kernel ridge regression to account for the nonlinear relationship between seismic data and geological features. We moreover employ kernel tricks to avoid the explicit nonlinear mapping and infinite dimension of feature space. Yet, the conventional kernel ridge regression can be computationally prohibitive because of the large volume of seismic measurements. We employ a data reduction technique in combination with the conventional kernel ridge regression method to improve the computational efficiency and reduce memory usage. In particular, we utilize a randomized numerical linear algebra technique, named Nyström method, to effectively reduce the dimensionality of the feature space without compromising the information content required for accurate characterization. We provide thorough computational cost analysis to show the efficiency of our new geological feature characterization methods. We validate the performance of our method in characterizing geologic fault zones because faults play an important role in various subsurface applications. Our numerical examples demonstrate that our new characterization method significantly improves the computational efficiency while maintaining comparable accuracy. Interestingly, we demonstrate that our approach yields a speedup ratio on the order of ~102 to ~103 in a multicore computational environment.

58 GEOSCIENCES↗

DOE OSTI2023

Multiscale graph neural network autoencoders for interpretable scientific machine learning

The goal of this work is to address two limitations in autoencoder-based models: latent space interpretability and compatibility with unstructured meshes. This is accomplished here with the development of a novel graph neural network (GNN) autoencoding architecture with demonstrations on complex fluid flow applications. To address the first goal of interpretability, the GNN autoencoder achieves reduction in the number nodes in the encoding stage through an adaptive graph reduction procedure. Further, this reduction procedure essentially amounts to flowfieldconditioned node sampling and sensor identification, and produces interpretable latent graph representations tailored to the flowfield reconstruction task in the form of so-called masked fields. These masked fields allow the user to (a) visualize where in physical space a given latent graph is active, and (b) interpret the time-evolution of the latent graph connectivity in accordance with the time-evolution of unsteady flow features (e.g. recirculation zones, shear layers) in the domain. To address the goal of unstructured mesh compatibility, the autoencoding architecture utilizes a series of multi-scale message passing (MMP) layers, each of which models information exchange among node neighborhoods at various lengthscales. The MMP layer, which augments standard single-scale message passing with learnable coarsening operations, allows the decoder to more efficiently reconstruct the flowfield from the identified regions in the masked fields. Analysis of latent graphs produced by the autoencoder for various model settings are conducted using unstructured snapshot data sourced from large-eddy simulations in a backward-facing step (BFS) flow configuration with an OpenFOAM-based flow solver at high Reynolds numbers.

97 MATHEMATICS AND COMPUTING↗

NASA NTRSDate not supplied

A Principal Component and Machine Learning Approach to Spatially Gap Fill Hyperspectral Ocean Color Satellite Retrievals

Retrievals of ocean color properties from space are important for monitoring the health of the ocean ecosystem but such retrievals tend to be limited in spatial coverage due to conditions such as clouds, aerosols, and sun glint. Gap filling of ocean color retrievals is typically performed by combining retrievals from multiple satellites or temporally averaging multiple days of retrievals but despite these techniques large gaps still exist posing challenges for near real time monitoring of events like harmful algae blooms. To address these limitations, we propose a spatial gap filling approach using machine learning to learn how to perform an atmospheric correction under challenging retrieval conditions. In this approach a principal component analysis is used to decompose the hyperspectral measurements into spectral features that describe the scattering and absorption of the atmosphere as well as the underlying surface. The coefficients of the principal components are then used to train a neural network to predict ocean color properties derived from a standard ocean color algorithm such as the MODIS atmospheric correction algorithm. This machine learning approach is independent of a priori information and does not rely on any radiative transfer modeling. We apply the approach to two hyperspectral UV/VIS instruments, the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can be used to estimate ocean color properties such as chlorophyll, remote sensing reflectance, and fluorescence line height. This method could be used as a gap-filling technique for the future Ocean Color Instrument (OCI) which will be onboard NASA's Plankton, Aerosol Cloud, ocean Ecosystem (PACE) ocean color satellite to provide additional information for monitoring the health of our global oceans. Additionally, it could be applied to the geostationary satellite Tropospheric Emissions: Monitoring of Pollution (TEMPO) to better understand diurnal variability in ocean ecology.

MODIS atmospheric correction algorithm↗

DOE OSTI2021

Cric searchable image database as a public platform for conventional pap smear cytology data

Amidst the current health crisis and social distancing, telemedicine has become an important part of mainstream of healthcare, and building and deploying computational tools to support screening more efficiently is an increasing medical priority. The early identification of cervical cancer precursor lesions by Pap smear test can identify candidates for subsequent treatment. However, one of the main challenges is the accuracy of the conventional method, often subject to high rates of false negative. While machine learning has been highlighted to reduce the limitations of the test, the absence of high-quality curated datasets has prevented strategies development to improve cervical cancer screening. The Center for Recognition and Inspection of Cells (CRIC) platform enables the creation of CRIC Cervix collection, currently with 400 images (1,376 × 1,020 pixels) curated from conventional Pap smears, with manual classification of 11,534 cells. This collection has the potential to advance current efforts in training and testing machine learning algorithms for the automation of tasks as part of the cytopathological analysis in the routine work of laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

A systematic review of machine learning in groundwater monitoring

With increasing concerns about water scarcity, groundwater has become crucial since this resource provides most of the freshwater needs. However, various human and natural activities often contaminate the groundwater, making it unsuitable for use. Over the years, scientists and engineers have used many methods to predict and track groundwater contamination as part of environmental monitoring. Consequently, there is an urgent need for improved methods, particularly in the face of increasing contamination. Machine learning has sometimes been used to monitor groundwater, air quality, and climate. Traditional methods must be improved due to the complexity and large amount of environmental data. This includes using hybrid models that combine traditional and new techniques. Despite the use of machine learning in many scientific areas, there is a lack of comprehensive reviews focusing on its use in environmental monitoring, especially groundwater monitoring. We aim to fill this gap by exploring machine-learning applications in groundwater monitoring. We discuss relevant methods, their limitations, and future potential. We summarize research on automating data processing and model training using groundwater sensor data. Our research underscores the transformative potential of machine learning to revolutionize long-term groundwater monitoring and contamination detection, providing valuable insights for future research and practical applications.

AI/ML↗

DOE OSTI2023

Land surface dynamics and meteorological forcings modulate land surface temperature characteristics

This study examines the effect of land cover, vegetation health, climatic forcings, elevation heat loads, and terrain characteristics (LVCET) on land surface temperature (LST) distribution over West Africa (WA). We employ fourteen machine-learning models, which preserve nonlinear relationships, to downscale LST and other predictands while preserving the geographical variability of WA. Our results showed that the random forest model performs best in downscaling predictands. This is important for the sub-region since it has limited access to mainframes to power multiplex machine-learning algorithms. In contrast to the northern regions, the southern regions consistently exhibit healthy vegetation. Also, areas with unhealthy vegetation coincide with hot LST clusters. The positive Normalized Difference Vegetation Index (NDVI) trends in the Sahel underscore rainfall recovery and subsequent Sahelian greening. The southwesterly winds cause the upwelling of cold waters, lowering LST in southern WA and highlighting the cooling influence of water bodies on LST. Identifying regions with elevated LST is paramount for prioritizing greening initiatives, and our study underscores the importance of considering LVCET factors in urban planning. Topographic slope-facing angles, heat loads, and diurnal anisotropic heat all contribute to variations in LST, emphasizing the need for a holistic approach when designing resilient and sustainable landscapes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

What Machine Learning Can and Cannot Do for Inertial Confinement Fusion

Machine learning methodologies have played remarkable roles in solving complex systems with large data, well-defined input–output pairs, and clearly definable goals and metrics. The methodologies are effective in image analysis, classification, and systems without long chains of logic. Recently, machine-learning methodologies have been widely applied to inertial confinement fusion (ICF) capsules and the design optimization of OMEGA (Omega Laser Facility) capsule implosion and NIF (National Ignition Facility) ignition capsules, leading to significant progress. As machine learning is being increasingly applied, concerns arise regarding its capabilities and limitations in the context of ICF. ICF is a complicated physical system that relies on physics knowledge and human judgment to guide machine learning. Additionally, the experimental database for ICF ignition is not large enough to provide credible training data. Most researchers in the field of ICF use simulations, or a mix of simulations and experimental results, instead of real data to train machine learning models and related tools. They then use the trained learning model to predict future events. This methodology can be successful, subject to a careful choice of data and simulations. However, because of the extreme sensitivity of the neutron yield to the input implosion parameters, physics-guided machine learning for ICF is extremely important and necessary, especially when the database is small, the uncertain-domain knowledge is large, and the physical capabilities of the learning models are still being developed. In this work, we identify problems in ICF that are suitable for machine learning and circumstances where machine learning is less likely to be successful. This study investigates the applications of machine learning and highlights fundamental research challenges and directions associated with machine learning in ICF.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2023

Gaussian approximation potentials for accurate thermal properties of two-dimensional materials

Two-dimensional materials (2DMs) continue to attract a lot of attention, particularly for their extreme flexibility and superior thermal properties. Molecular dynamics simulations are among the most powerful methods for computing these properties, but their reliability depends on the accuracy of interatomic interactions. While first principles approaches provide the most accurate description of interatomic forces, they are computationally expensive. In contrast, classical force fields are computationally efficient, but have limited accuracy in interatomic force description. Machine learning interatomic potentials, such as Gaussian Approximation Potentials, trained on density functional theory (DFT) calculations offer a compromise by providing both accurate estimation and computational efficiency. Here, in this work, we present a systematic procedure to develop Gaussian approximation potentials for selected 2DMs, graphene, buckled silicene, and h-XN (X = B, Al, and Ga, as binary compounds) structures. We validate our approach through calculations that require various levels of accuracy in interatomic interactions. The calculated phonon dispersion curves and lattice thermal conductivity, obtained through harmonic and anharmonic force constants (including fourth order) are in excellent agreement with DFT results. HIPHIVE calculations, in which the generated GAP potentials were used to compute higher-order force constants instead of DFT, demonstrated the first-principles level accuracy of the potentials for interatomic force description. Molecular dynamics simulations based on phonon density of states calculations, which agree closely with DFT-based calculations, also show the success of the generated potentials in high-temperature simulations.

2D Materials↗

DOE OSTI2019

Atlas of putative minima and low-lying energy networks of water clusters n = 3 - 25

We report a database consisting of the putative minima and ~3.2 million local minima lying within 5 kcal/mol from the putative minima for water clusters of sizes n = 3 – 25 using an improved version of the Monte Carlo Temperature Basin Paving (MCTBP) global optimization procedure in conjunction with the ab-initio based, flexible, polarizable Thole-Type Model (TTM2.1-F, version 2.1) interaction potential for water. Several of the low-lying structures, as well as lowlying penta-coordinated water networks obtained with the TTM2.1-F potential, were further refined at the Møller-Plesset second order perturbation MP2/aug-cc-pVTZ level of theory. In total, we have identified 3,138,303 networks corresponding to local minima of the clusters n = 3 – 25, whose Cartesian coordinates and relative energies can be obtained from the webpage https://sites.uw.edu/wdbase/. Networks containing penta-coordinated water molecules start to appear at n = 11 and, quite surprisingly, are energetically close (within 1 – 3 kcal/mol) to the putative minima, a fact that has been confirmed from the MP2 calculations. This large database of water cluster minima spanning quite dissimilar hydrogen bonding networks is expected to influence the development and assessment of the accuracy of interaction potentials for water as well as lower scaling electronic structure methods (such as different density functionals). Furthermore, it can also be used in conjunction with data science approaches (including but no limited to neural networks, machine and deep learning) to understand the properties of water, nature’s most important substance.

Rakshit, Avijit↗

DOE OSTI2023

Quantum Neural Networks: Issues, Training, and Applications

Our work in the field aims at explaining the limitations and expressive power of Quantum Machine Learning models, as well as finding feasible training algorithms that could be implemented in near-term Quantum Computers. The promise of Quantum Machine Learning is that by incorporating quantum effects, such as entanglement, into machine learning models researchers can improve model performance and understand more complex datasets. This pledge is particularly pronounced in the design of Quantum neural networks (QNNs), a promising framework for creating quantum algorithms, that promise to outperform classical models by combining the speedups of quantum computation with the widespread successes of deep learning. We show that applying this approach alone to quantum deep learning is problematic given that an excess of entanglement between the hidden and visible layers can destroy the predictive power of our QNN models. We address the barren plateau problem by suggesting the use of a generative, unbounded, nonlinear loss function with simple gradients. The loss function quantifies how much the quantum states generated by the QNNs differ from the data and the goal during training is to minimize it. Finally, we showcase how to use generative training to construct a "classical-quantum" neural network to accurately interpolate between the ground states of a Molecular Hamiltonian, a central question in Quantum Chemistry.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Best estimate of the planetary boundary layer height from multiple remote sensing measurements

Remote sensing measurements have been widely used to estimate the planetary boundary layer height (PBLHT). Each remote sensing approach offers unique strengths and faces different limitations. In this study, we use machine learning (ML) methods to produce a best-estimate PBLHT (PBLHT-BE-ML) by integrating four PBLHT estimates derived from remote sensing measurements at the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) observatory. Three ML models – random forest (RF) classifier, RF regressor, and light gradient-boosting machine (LightGBM) – were trained on a dataset from 2017 to 2023 that included radiosonde, various remote sensing PBLHT estimates, and atmospheric meteorological conditions. Evaluations indicated that PBLHT-BE-ML from all three models improved alignment with the PBLHT derived from radiosonde data (PBLHT-SONDE), with LightGBM demonstrating the highest accuracy under both stable and unstable boundary layer conditions. Feature analysis revealed that the most influential input features at the SGP site were the PBLHT estimates derived from (a) potential temperature profiles retrieved using Raman lidar (RL) and atmospheric emitted radiance interferometer (AERI) measurements (PBLHT-THERMO), (b) vertical velocity variance profiles from Doppler lidar (PBLHT-DL), and (c) aerosol backscatter profiles from micropulse lidar (PBLHT-MPL). The trained models were then used to predict PBLHT-BE-ML at a temporal resolution of 10 min, effectively capturing the diurnal evolution of PBLHT and its significant seasonal variations, with the largest diurnal variation observed over summer at the SGP site. We applied these trained models to data from the ARM Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) field campaign (EPC), where the PBLHT-BE-ML, particularly with the LightGBM model, demonstrated improved accuracy against PBLHT-SONDE. Analyses of model performance at both the SGP and EPC sites suggest that expanding the training dataset to include various surface types, such as ocean and ice-covered areas, could further enhance ML model performance for PBLHT estimation across varied geographic regions.

Zhang, Damao [Pacific Northwest National Laborator↗

NASA NTRS2021

Assessment of the Advanced Very High Resolution Radiometer (AVHRR) for Snowfall Retrieval in High Latitudes Using CloudSat and Machine Learning

Precipitation retrieval is a challenging topic, especially in high latitudes (HL), and current precipitation products face ample challenges over these regions. This study investigates the potential of the Advanced Very High Resolution Radiometer (AVHRR) for snowfall retrieval in HL using CloudSat radar information and machine learning (ML). With all the known limitations, AVHRR observations should be considered for HL snowfall retrieval because 1) AVHRR data have been continuously collected for about four decades on multiple platforms with global coverage, and similar observations will likely continue in the future; 2) current passive microwave satellite precipitation products have several issues over snow and ice surfaces; and 3) good coincident observations between AVHRR and CloudSat are available for training ML algorithms. Using ML, snowfall rate was retrieved from AVHRR’s brightness temperature and cloud probability, as well as auxiliary information provided by numerical reanalysis. The results indicate that the ML-based retrieval algorithm is capable of detection and estimation of snowfall with comparable or better statistical scores than those obtained from the Atmospheric Infrared Sounder (AIRS) and two passive microwave sensors contributing to the Global Precipitation Measurement (GPM) mission constellation. The outcomes also suggest that AVHRR-based snowfall retrievals are spatially and temporally reasonable and can be considered as a quantitatively useful input to the merged precipitation products that require frequent sampling or long-term records.

Mohammad Reza↗

DOE OSTI2021

Teaching a neural network to attach and detach electrons from molecules

Abstract Interatomic potentials derived with Machine Learning algorithms such as Deep-Neural Networks (DNNs), achieve the accuracy of high-fidelity quantum mechanical (QM) methods in areas traditionally dominated by empirical force fields and allow performing massive simulations. Most DNN potentials were parametrized for neutral molecules or closed-shell ions due to architectural limitations. In this work, we propose an improved machine learning framework for simulating open-shell anions and cations. We introduce the AIMNet-NSE (Neural Spin Equilibration) architecture, which can predict molecular energies for an arbitrary combination of molecular charge and spin multiplicity with errors of about 2–3 kcal/mol and spin-charges with error errors ~0.01e for small and medium-sized organic molecules, compared to the reference QM simulations. The AIMNet-NSE model allows to fully bypass QM calculations and derive the ionization potential, electron affinity, and conceptual Density Functional Theory quantities like electronegativity, hardness, and condensed Fukui functions. We show that these descriptors, along with learned atomic representations, could be used to model chemical reactivity through an example of regioselectivity in electrophilic aromatic substitution reactions.

36 MATERIALS SCIENCE↗

DOE OSTI2022

When physics-informed data analytics outperforms black-box machine learning: A case study in thickness control for additive manufacturing

Aerosol jet printing (AJP) has emerged as a promising noncontact additive manufacturing method for high-resolution printing for a wide range of material systems. A key challenge limiting the broader adoption of AJP in the material science community is the lack of methods to precisely control thickness. Herein, we develop a model-based design of experiment (MBDoE) framework that integrates physics-informed models, nonlinear regression, and information criteria to postulate, select and calibrate the best model to describe and optimize the AJP manufacturing process. Starting with already available data from system commissioning (e.g., prior single variable sensitivity analysis), four candidate physics-informed models are postulated and trained. MBDoE identifies a single additional optimal experiment to validate these predictive models with quantified uncertainties, which are then used to determine the best experimental conditions to control printed film thickness. As a comparative benchmark, the analysis is repeated using the same dataset with nonparametric Gaussian process regression (GPR) model that does not incorporate physical information. Using MBDoE principles, we find that only five experiments are necessary to calibrate the nonlinear physics-informed parametric model, and with said limited data, this model outperforms the black-box machine learning GPR model. This key result underscores an emerging trend in the data science community: incorporating physical information into predictive models often drastically reduces the data requirements. Leveraging MBDoE further increased the data efficiency. By design, the proposed data science framework is general in nature and can be easily extended to other experimental and additive manufacturing systems beyond AJP.

Aerosol jet printing↗

DOE OSTI2023

Electrochemical Degradation of Pt 3 Co Nanoparticles Investigated by Off-Lattice Kinetic Monte Carlo Simulations with Machine-Learned Potentials

In fuel cell applications, the durability of catalysts is critical for large-scale industrial implementation. However, limited synthesis controllability and spectroscopic resolution impede a comprehensive understanding of degradation mechanisms at the atomic level. In this study, we develop a machine-learned potential (MLP) to simulate the degradation processes for Pt3Co nanoparticles. The precision of MLP is determined to be comparable to that of density functional theory calculations. Using off-lattice kinetic Monte Carlo simulations with MLP, we successfully replicate established experimental trends and offer a logical resolution to ongoing debates regarding atomic orderings. Based on the simulation results, we suggest design principles for Pt3Co nanoparticles that combine high activity and durability. Finally, we validate the wide applicability of our method by successfully applying it to Pt3Ni and Pt3Co0.5Ni0.5 nanoparticles. The research serves as a guideline for developing MLPs for alloy electrochemical catalysts and lays the foundation for designing more durable and active fuel-cell catalysts.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Evolving Multi-hazard Machine Learning Modeling for Advanced Risk-Informed Infrastructure Resilience Assessment

The socioeconomic impacts of pipeline incidents have escalated over the past three decades, revealing the limitation of traditional risk modeling methods when applied to extensive pipeline networks. This research aims to develop machine learning (ML) models that effectively identify, rank, and predict the diverse hazards and socioeconomic consequences associated with pipeline incidents. Utilizing historical data on pipeline incidents alongside weather and oceanographic data from the 1980s onward, the Houston metropolitan area serves as a testbed for the proposed methodologies. The research segments the combined datasets into three consecutive periods, demonstrating the efficacy of the updated model in predicting future events, particularly concerning precipitation rate data. Despite the challenges posed by a relatively limited dataset, local-level ML modeling offers valuable insights into the spatial and temporal dynamics of multiple hazards that contribute to pipeline incidents. These findings hold significant implications for future research, particularly in understanding and mitigating risks in various locations across the Gulf Coast and other coastal regions.

42 ENGINEERING↗