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At least 199 records · Page 11

Final Report for Award DE-FG02-09ER16008

The research objectives of this project was to characterize the factors that regulate the pattern, amount and quality of cellulose deposition in higher plants. We pursued this goal in four ways: (1) by searching for proteins that interact with the cellulose synthase complex using novel bioinformatics tools to identify genes which exhibit gene expression patterns that are highly correlated with cellulose synthase components, (2) by using cellulose synthase domains as bait in 2-hybrid screens, and then characterizing any proteins that are identified by both gene expression network analysis and 2-hybrid screens (3) by testing the function of all known post-translational modifications, (4) by identifying and characterizing kinases that carry out most of the known post-translational modification of cellulose synthase components.

59 BASIC BIOLOGICAL SCIENCES↗

Barium stars as tracers of s -process nucleosynthesis in AGB stars

Barium (Ba) stars help to verify asymptotic giant branch (AGB) star nucleosynthesis models since they experienced pollution from an AGB binary companion and thus their spectra carry the signatures of the slow neutron capture process (s process). For a large number (180) of Ba stars, we searched for AGB stellar models that match the observed abundance patterns. We aim to uncover any systematic deviations of the sample abundances from the predictions of the nucleosynthesis models. We employed three machine learning algorithms as classifiers: a Random Forest method, developed for this work, and the two classifiers used in our previous study. Compared to that work, we also expanded our observational sample with 11 Ba stars available in the supersolar metallicity range. We studied the statistical behaviour of the different s-process elements in the observational sample to investigate if the AGB models systematically under- or overpredict the abundances observed in the Ba stars and show the results in the form of violin plots of the residuals between spectroscopic abundances and model predictions. We inspected the correlations between the observed [Fe/H], the s-process elemental abundances, and the residuals. We employed the [Zr/Fe] and [Nb/Fe] abundances as a thermometer to constrain the operational temperature that rules the production of these elements in the sample stars, assuming a steady-state s process. We also investigated the mass distribution of the identified polluter AGB stars and the behaviour of the δ parameter, which describes the fraction of accreted AGB material relative to the Ba star envelope. We find a significant trend in the residuals that implies an underproduction of the elements just after the first s-process peak (Nb, Mo, and Ru) in the models relative to the observations. This may originate from a neutron-capture process (e.g. the intermediate neutron-capture process, i process) not yet included in the AGB models of metallicity from solar to roughly 1/5 solar, corresponding to the range of the Ba stars. Correlations are found between the residuals of these peculiar elements, suggesting a common origin for the deviations from the models. In addition, there is a weak metallicity dependence of the residuals of these elements. The s-process temperatures derived with the [Zr/Fe] – [Nb/Fe] thermometer have an unrealistic value for the majority of our stars. The most likely explanation is that at least a fraction of these elements are not produced in a steady-state s process, and instead may be due to processes not included in the AGB models. The mass distribution of the identified models confirms that our sample of Ba stars was polluted by low-mass AGB stars (< 4 M ⊙ ). Most of the matching AGB models require low accreted mass, but a few systems with high accreted mass are needed to explain the observations.

79 ASTRONOMY AND ASTROPHYSICS↗

18 Sco: A solar twin rich in refractory and neutron-capture elements. Implications for chemical tagging

We study with unprecedented detail the chemical composition and stellar parameters of the solar twin 18 Sco in a strictly differential sense relative to the Sun. Our study is mainly based on high-resolution (R ∼ 110,000), high signal-to-noise ratio (800-1,000) Very Large Telescope UVES spectra, which allow us to achieve a precision of about 0.005 dex in differential abundances. The effective temperature and surface gravity of 18 Sco are T{sub eff} = 5823 ± 6 K and log g = 4.45 ± 0.02 dex, i.e., 18 Sco is 46 ± 6 K hotter than the Sun and log g is 0.01 ± 0.02 dex higher. Its metallicity is [Fe/H] = 0.054 ± 0.005 dex, and its microturbulence velocity is +0.02 ± 0.01 km s{sup –1} higher than solar. Our precise stellar parameters and differential isochrone analysis show that 18 Sco has a mass of 1.04 ± 0.02 M{sub ☉} and that it is ∼1.6 Gyr younger than the Sun. We use precise High Accuracy Radial velocity Planet Searcher (HARPS) radial velocities to search for planets, but none are detected. The chemical abundance pattern of 18 Sco displays a clear trend with condensation temperature, thus showing higher abundances of refractories in 18 Sco than in the Sun. Intriguingly, there are enhancements in the neutron-capture elements relative to the Sun. Despite the small element-to-element abundance differences among nearby n-capture elements (∼0.02 dex), we successfully reproduce the r-process pattern in the Solar System. This is independent evidence for the universality of the r process. Our results have important implications for chemical tagging in our Galaxy and nucleosynthesis in general.

79 ASTRONOMY AND ASTROPHYSICS↗

Refinement for single-nanoparticle structure determination from low-quality single-shot coherent diffraction data

With the emergence of X-ray free-electron lasers, it is possible to investigate the structure of nanoscale samples by employing coherent diffractive imaging in the X-ray spectral regime. In this work, we developed a refinement method for structure reconstruction applicable to low-quality coherent diffraction data. The method is based on the gradient search method and considers the missing region of a diffraction pattern and the small number of detected photons. We introduced an initial estimate of the structure in the method to improve the convergence. The present method is applied to an experimental diffraction pattern of an Xe cluster obtained in an X-ray scattering experiment at the SPring-8 Angstrom Compact free-electron LAser (SACLA) facility. It is found that the electron density is successfully reconstructed from the diffraction pattern with a large missing region, with a good initial estimate of the structure. The diffraction pattern calculated from the reconstructed electron density reproduced the observed diffraction pattern well, including the characteristic intensity modulation in each ring. Our refinement method enables structure reconstruction from diffraction patterns under difficulties such as missing areas and low diffraction intensity, and it is potentially applicable to the structure determination of samples that have low scattering power.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Progress Towards an Investigation of the MiniBooNE Low Energy Excess Using Neutral-Current Delta-Like Single Photons in MicroBooNE with Wire-Cell 3D Reconstruction Algorithms

This note presents progress towards a Neutral-Current (NC) Delta-like single photon search in MicroBooNE using Wire-Cell 3D reconstruction and pattern recognition algorithms. This analysis will help address the question of the MiniBooNE Low Energy Excess (LEE) [1]. The selections are similar to the previously published Pandora-based single photon selections [2] in many ways, but here we use independent reconstruction and selection tools and examine a larger phase space (including charged pions and multiple protons). In the future, we will significantly reduce systematic uncertainties via the use of constraining sideband observations in order to statistically test specific models of the MiniBooNE LEE.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Progress towards an investigation of the MiniBooNE Low Energy Excess using neutral-current Delta-like single photons in MicroBooNE with Wire-Cell 3D reconstruction algorithms

This note presents progress towards a Neutral-Current (NC) Delta-like single photon search in MicroBooNE using Wire-Cell 3D reconstruction and pattern recognition algorithms. This analysis will help address the question of the MiniBooNE Low Energy Excess (LEE). The selections are similar to the previously published Pandora-based single photon selections in many ways, but here we use independent reconstruction and selection tools and examine a larger phase space (including charged pions and multiple protons). In the future, we will significantly reduce systematic uncertainties via the use of constraining sideband observations in order to statistically test specific models of the MiniBooNE LEE.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A search for large-scale convection cells in the solar atmosphere

Mount Wilson magnetograph velocity observations are used to search for east-west motions resulting from hypothetical cellular patterns extending over one or two hemispheres in the latitude direction. No such solar patterns were found. Upper limits established by this analysis depend on the cell lifetime and the pattern stability, but in all cases they are no more than about 10 m/s.

Howard, R.↗

Report of the Workshop on Geologic Applications of Remote Sensing to the Study of Sedimentary Basins

The Workshop on Geologic Applications of Remote Sensing to the Study of Sedimentary Basins, held January 10 to 11, 1985 in Lakewood, Colorado, involved 43 geologists from industry, government, and academia. Disciplines represented ranged from vertebrate paleontology to geophysical modeling of continents. Deliberations focused on geologic problems related to the formation, stratigraphy, structure, and evolution of foreland basins in general, and to the Wind River/Bighorn Basin area of Wyoming in particular. Geological problems in the Wind River/Bighorn basin area that should be studied using state-of-the-art remote sensing methods were identified. These include: (1) establishing the stratigraphic sequence and mapping, correlating, and analyzing lithofacies of basin-filling strata in order to refine the chronology of basin sedimentation, and (2) mapping volcanic units, fracture patterns in basement rocks, and Tertiary-Holocene landforms in searches for surface manifestations of concealed structures in order to refine models of basin tectonics. Conventional geologic, topographic, geophysical, and borehole data should be utilized in these studies. Remote sensing methods developed in the Wind River/Bighorn Basin area should be applied in other basins.

Lang, H. R.↗

From Dust to Planets: The Tale Told by Moderately Volatile Element Depletion (MOVED)

The pronounced depletion of moderately volatile elements (MOVE, that condense or evaporate at temperatures in the range 1350-650K) relative to the average solar composition is a characteristic feature in most primitive chondrites and bulk terrestrial planets. It differs from the composition of the Sun and from the materials further away from the Sun (CI chondrites). None of the remaining planets or even meteorites shows an enrichment of volatile elements that would balance the depletion in the inner Solar System. Whether this depletion occurred in solar nebular stage or in planetary formation stage has been the subject of long lasting debate. The search for mysterite initiated in 1973 continues today in search of lost planets. Here I show that the MOVED patterns demonstrate a clear connection between the rocky materials of the inner solar system and the interstellar dust. The inheritance of interstellar materials by the solar system is not only documented by the presence of presolar grains, various isotopic anomalies, but also expressed in the chemical element distribution in the inner solar system.

Yin, Qing-Zhu↗

Classification of Meteorological Influences Surrounding Extreme Precipitation Events in the United States using the MERRA-2 Reanalysis

Extreme precipitation events can have a large impact on society through flooding that can result in property destruction, crop losses, economic losses, the spread of water-borne diseases, and fatalities. Observations indicate there has been a statistically significant increase in extreme precipitation events over the past 15 years in the Northeastern United States and other localized regions of the country have become crippled with record flooding events, for example, the flooding that occurred in the Southeast United States associated with Hurricane Matthew in October 2016. Extreme precipitation events in the United States can be caused by various meteorological influences such as extratropical cyclones, tropical cyclones, mesoscale convective complexes, general air mass thunderstorms, upslope flow, fronts, and the North American Monsoon. Reanalyses, such as the Modern Era Retrospective Analysis for Research and Applications, version 2 (MERRA-2), have become a pivotal tool to study the meteorology surrounding extreme precipitation events. Using days classified as an extreme precipitation events based on a combination of observational gauge and radar data, two techniques for the classification of these events are used to gather additional information that can be used to determine how events have changed over time using atmospheric data from MERRA-2. The first is self organizing maps, which is an artificial neural network that uses unsupervised learning to cluster like patterns and the second is an automated detection technique that searches for characteristics in the atmosphere that define a meteorological phenomena. For example, the automated detection for tropical cycles searches for a defined area of suppressed sea level pressure, alongside thickness anomalies aloft, indicating the presence of a warm core. These techniques are employed for extreme precipitation events in preselected regions that were chosen based an analysis of the climatology of precipitation.

Monsoon↗

Learned pattern recognition using synthetic-discriminant-functions

A method of using synthetic-discriminant-functions to facilitate learning in a pattern recognition system is discussed. Learning is accomplished by continually adding images to the training set used for synthetic discriminant functions (SDF) construction. Object identification is performed by efficiently searching a library of SDF filters for the maximum optical correlation. Two library structures are discussed - binary tree and multilinked graph - along with maximum ascent, back-tracking, perturbation, and simulated annealing searching techniques. By incorporating the distortion invariant properties of SDFs within a library structure, a robust pattern recognition system can be produced.

Jared, David A.↗

On-line optimization scheme for HVAC demand response

A computer-implemented method of optimizing demand-response (DR) of a heating, ventilation, and air-conditioning (HVAC) system of a building, includes determining (30, 31, 32) a value of an objective function F.sub.ij of a HVAC system for each of a plurality of DR strategies j for each of a plurality of weather patterns i that is a weighted sum of an energy cost of the HVAC system and a thermal comfort loss of the HVAC system, assigning (33, 34, 35, 36) a likelihood score L.sub.i,j to each of a selected subset of near-optimal DR strategies j for each weather pattern i, and selecting (37, 38) those near-optimal DR strategies with large overall likelihood scores L.sub.j to create an optimal strategy pool of DR strategies. An optimal strategy pool can be searched (39) in real-time for an optimal DR strategy for a given weather pattern.

42 ENGINEERING↗

Biosignatures of Past Life are Also Relevant to the Search for Extant Life

A biosignature (a “definitive biosignature” or DBS) is an object, substance pattern and/or process whose origin requires a biological agent. A potential biosignature (PBS) is a feature that might have a biological origin and thus compels investigators to gather more data before determining the presence or absence of life. The usefulness of a PBS is determined not only by the probability that life created it but also by the improbability that nonbiological processes produced it. Habitable planetary environments create nonbiological features that can mimic biosignatures, so these environments must be characterized to the extent necessary to confirm the presence of DBS. Environments also must have allowed biosignatures to be preserved and to remain amenable to detection.

Des Marais, D. J.↗

Pulse shape discrimination technique for diffuse supernova neutrino background search with JUNO

Pulse shape discrimination (PSD) is widely used in particle and nuclear physics. Specifically in liquid scintillator detectors, PSD facilitates the classification of different particle types based on their energy deposition patterns. This technique is particularly valuable for studies of the diffuse supernova neutrino background (DSNB), nucleon decay, and dark matter searches. This paper presents a detailed investigation of the PSD technique, applied in the DSNB search performed with the Jiangmen Underground Neutrino Observatory (JUNO). Instead of using conventional cut-and-count methods, we employ methods based on boosted decision trees and neural networks and compare their capability to distinguish the DSNB signals from the atmospheric neutrino neutral-current background events. The two methods demonstrate comparable performance, resulting in a 50–80% improvement in signal efficiency compared to a previous study performed for JUNO (An et al. [JUNO] in J Phys G 43(3):030401, 2016). Moreover, we study the dependence of the PSD performance on the visible energy and final state composition of the events and find a significant dependence on the presence/absence of 11 C. Finally, we evaluate the impact of the detector effects (photon propagation, PMT dark noise, and waveform reconstruction) on the PSD performance.

FOS: Physical sciences↗

B-1 AFT Nacelle Flow Visualization Study

A 2-month program was conducted to perform engineering evaluation and design tasks to prepare for visualization and photography of the airflow along the aft portion of the B-1 nacelles and nozzles during flight test. Several methods of visualizing the flow were investigated and compared with respect to cost, impact of the device on the flow patterns, suitability for use in the flight environment, and operability throughout the flight. Data were based on a literature search and discussions with the test personnel. Tufts were selected as the flow visualization device in preference to several other devices studied. A tuft installation pattern has been prepared for the right-hand aft nacelle area of B-1 air vehicle No.2. Flight research programs to develop flow visualization devices other than tufts for use in future testing are recommended. A design study was conducted to select a suitable motion picture camera, to select the camera location, and to prepare engineering drawings sufficient to permit installation of the camera. Ten locations on the air vehicle were evaluated before the selection of the location in the horizontal stabilizer actuator fairing. The considerations included cost, camera angle, available volume, environmental control, flutter impact, and interference with antennas or other instrumentation.

Celniker, Robert↗

THE FUELING DIAGRAM: LINKING GALAXY MOLECULAR-TO-ATOMIC GAS RATIOS TO INTERACTIONS AND ACCRETION

To assess how external factors such as local interactions and fresh gas accretion influence the global interstellar medium of galaxies, we analyze the relationship between recent enhancements of central star formation and total molecular-to-atomic (H{sub 2}/H I) gas ratios, using a broad sample of field galaxies spanning early-to-late type morphologies, stellar masses of 10{sup 7.2}-10{sup 11.2} M{sub Sun }, and diverse stages of evolution. We find that galaxies occupy several loci in a ''fueling diagram'' that plots H{sub 2}/H I ratio versus mass-corrected blue-centeredness, a metric tracing the degree to which galaxies have bluer centers than the average galaxy at their stellar mass. Spiral galaxies of all stellar masses show a positive correlation between H{sub 2}/H I ratio and mass-corrected blue-centeredness. When combined with previous results linking mass-corrected blue-centeredness to external perturbations, this correlation suggests a systematic link between local galaxy interactions and molecular gas inflow/replenishment. Intriguingly, E/S0 galaxies show a more complex picture: some follow the same correlation, some are quenched, and a distinct population of blue-sequence E/S0 galaxies (with masses below key scales associated with transitions in gas richness) defines a separate loop in the fueling diagram. This population appears to be composed of low-mass merger remnants currently in late- or post-starburst states, in which the burst first consumes the H{sub 2} while the galaxy center keeps getting bluer, then exhausts the H{sub 2}, at which point the burst population reddens as it ages. Multiple lines of evidence suggest connected evolutionary sequences in the fueling diagram. In particular, tracking total gas-to-stellar mass ratios within the fueling diagram provides evidence of fresh gas accretion onto low-mass E/S0s emerging from their central starburst episodes. Drawing on a comprehensive literature search, we suggest that virtually all galaxies follow the same evolutionary patterns found in our broad sample.

79 ASTRONOMY AND ASTROPHYSICS↗

Evolving Larger Convolutional Layer Kernel Sizes for a Settlement Detection Deep-Learner on Summit

Deep-learner hyper-parameters, such as kernel sizes, batch sizes, and learning rates, can significantly influence the quality of trained models. The state of the art for finding optimal hyper-parameters generally uses a brute force, grid search approach, random search, or Bayesian-based optimization among other techniques. We applied an evolutionary algorithm to optimize kernel sizes for a convolutional neural network used to detect settlements in satellite imagery. Usually convolutional layer kernel sizes are small - typically one, three, or five - but we found that the system converged at, or near, kernel sizes of nine for the last convolutional layer, and that this occurred for multiple runs using two different datasets. Moreover, the larger kernel sizes had fewer false positives than the 3x3 kernel sizes found as optimal via a brute force uniform grid search. This suggests that this large kernel size may be leveraging patterns found in larger areal features in the source imagery, and that this may be generalized as possible guidance for similar remote sensing deep-learning tasks.

Coletti, Mark↗

SignalGen

PNNL contribution to project managed by federal agency. SignalGen is a software application that generates synthetic RDF graphs that satisfy the constraints specified in a search template. The purpose of this tool is most to aid in the development of the graph search engine and ensure it is able to find known graph patterns.

Avila, Andrew↗