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At least 199 records · Page 11

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DOE OSTI2020

Amylases in the Human Vagina

ABSTRACT Dominance of Lactobacillus species in vaginal communities is a hallmark of healthy conditions in the female genital tract. Key nutrients for lactobacilli include sugars produced when glycogen is degraded by α-amylase in the vagina. While α-amylase activity has been demonstrated in vaginal fluids, it is unclear whether α-amylases are produced solely by the host, bacteria in the vagina, or both. We screened cervicovaginal mucus from 23 reproductive-age women, characterized the species composition of vaginal communities, measured vaginal pH, and determined levels of amylase activity, glycogen, and lactic acid. Based on differences in these measured variables, one sample from each of four individual donors was selected for metagenomic and proteomic analyses. Of eight putative bacterial amylases identified in the assembled bacterial metagenomes, we detected four in vaginal fluids. These amylases were produced by various bacteria in different vaginal communities. Moreover, no two communities were the same in terms of which bacteria were producing amylases. Although we detected bacterial amylases in vaginal fluids, there was no clear association between the bacterial species that was dominant in a community and the level of amylase activity. This association was likely masked by the presence of human α-amylase, which was also detected in vaginal fluids. Finally, the levels of amylase activity and glycogen were only weakly associated. Our findings show, for the first time, that multiple amylases from both bacterial and human origins can be present simultaneously in the vagina. This work also suggests that the link between glycogen, amylase, and Lactobacillus in the vagina is complex. IMPORTANCE In this study, we show that multiple bacteria in the vaginal community produce amylases that hydrolyze glycogen into simpler sugars (i.e., maltose and maltotriose). These sugars serve as “common goods” that sustain bacterial populations in vaginal communities. Given the temporal changes that are observed in the human vaginal microbiome, we expect the kinds of bacterial amylases produced will also vary over time. These differences influence the pool of resources that are broadly shared and shape the species composition of the vaginal bacterial community.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Variance-Reduced Accelerated First-Order Methods: Central Limit Theorems and Confidence Statements

In this paper, we consider a strongly convex stochastic optimization problem and propose three classes of variable sample-size stochastic first-order methods: (i) the standard stochastic gradient descent method, (ii) its accelerated variant, and (iii) the stochastic heavy-ball method. In each scheme, the exact gradients are approximated by averaging across an increasing batch size of sampled gradients. We prove that when the sample size increases at a geometric rate, the generated estimates converge in mean to the optimal solution at an analogous geometric rate for schemes (i)–(iii). Based on this result, we provide central limit statements, whereby it is shown that the rescaled estimation errors converge in distribution to a normal distribution with the associated covariance matrix dependent on the Hessian matrix, the covariance of the gradient noise, and the step length. If the sample size increases at a polynomial rate, we show that the estimation errors decay at a corresponding polynomial rate and establish the associated central limit theorems (CLTs). Under certain conditions, we discuss how both the algorithms and the associated limit theorems may be extended to constrained and nonsmooth regimes. As a result, we provide an avenue to construct confidence regions for the optimal solution based on the established CLTs and test the theoretical findings on a stochastic parameter estimation problem.

Lei, Jinlong↗

DOE OSTI2025

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, 2023

This dataset includes raw and corrected specific conductivity, temperature, and calculated salinity measurements collected at 10 cm depth in a Typha angustifolia-dominated tidal brackish wetland at the upper estuary of Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research (PIE LTER) site. Measurements were taken to evaluate temporal variation in porewater salinity (a proxy for porewater sulfate concentration) in high frequency to assess soil and plant responses to changes in salinity. Measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger deployed in a well. Specific conductivity was corrected using non-linear temperature compensation, and salinity was calculated using the Practical Salinity Scale 1978 via Onset's HOBOware software. Reference conductivity measurements to correct for sensor drift were taken at the start and end of each deployment using a HACH HQ14D Portable Conductivity Meter. Data were then filtered in MATLAB to remove values logged while the sensor was out of the well or during post-deployment equilibration. Detailed metadata, including variable descriptions, sampling methods, QA/QC procedures, and site information, are provided in the files: Typha_ctd_salinity_dd.csv and Typha_MI_ctd_salinity_2023_flmd.csv.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, May-December 2022

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2018

Analysis and Distribution of Proppant Recovered from Fracture Faces in the HFTS Slant Core Drilled through a Stimulated Reservoir

Although sand proppant has been used since 1949 to increase efficacy of hydraulically fractured treatments by preventing fractures from closing after well depressurization, many questions remain regarding the behavior and distribution of proppant in the subsurface. To this end, we quantified the amount of recovered proppant in open fractures within a slant core drilled through hydraulically fractured Wolfcamp Shale. To improve understanding of hydraulic-fracture growth and patterns, we then addressed basic questions such as the following regarding proppant behavior in the subsurface: Is there variation along the length of the examined core? Is the proppant mainly found in hydraulic fractures, in reactivated natural fractures, or is it transported into drilling-induced fractures during recovery? Do the majority of proppant grains remain whole or tend to get crushed? To answer these questions, we collected all material from every open fracture (407 samples total) within ~600 ft of core. Samples consisted of drilling mud, aluminum shavings from the core barrel, shale and lithic fragments, calcite, and, potentially, sand proppant (95% plain and 5% colored resin-coated grains) pumped during the hydraulic fracturing of adjacent wells. We then washed, sieved into four size fractions, weighed, and imaged all samples for quantitative image analysis. Retrieved samples were labeled with respect to a master fracture database, where fractures were identified in the core and on CT scans of each 3-ft interval, allowing us to code them as either hydraulic, natural reactivated, or drilling/recovery-induced fractures. From this coding, we quantified the amount of proppant within each fracture, analyzed the distribution of grains among different fracture types, and traced base versus colored grains. Proppant packs 0.5–1 cm thick were found in two locations where there was complex fracture geometry, but fracture faces showed no evidence of proppant embedment. In situ sand patches were found on a few fracture faces, mostly in fractures near the proppant packs. Pumped proppant was 100 and 40/70 mesh (149–420 μm), and even though widespread grain crushing is not observed, the majority of recovered proppant ranges from 63 to 250 μm. The distribution of retrieved proppant, especially the larger retrieved sizes (250– >500 μm), mirrors the proximity of the slant core to the hydraulic fracture treatment wells. Hydraulic fracture samples contained variable amounts of proppant, and natural reactivated fractures sometimes contained more proppant than nearby hydraulic fractures, suggesting transference between fracture types in the subsurface. Regarding colored proppant, some colored sands occurred in discreet fractures, whereas other colors appeared to be mixed and widespread. Ultimately, all fractures contain at least some proppant, especially in the smallest size fractions; however, the extent to which the proppant was introduced during the core-drilling process is still unknown. Our study is one of the first attempts at physically recovering and quantifying injected proppant from parted fracture breaks within a stimulated reservoir, and the results are significant in terms of understanding propped fracture networks and predicting future proppant distribution during hydraulic fracturing.

Elliott, Sara↗

DOE OSTI2023

Insoluble Solids from Salt Dissolution: Characterization and Testing

Savannah River National Laboratory (SRNL) has further characterized insoluble solids that were observed in a variable depth sample from a salt dissolution campaign in Tank 9H. The insoluble solids were determined to be predominately gibbsite, a mineral form of aluminum hydroxide. From a review of salt dissolution testing and field experience, SRNL provided a realistic estimate of 8 vol% for solids of this type is formed per volume of saltcake dissolved. This estimate was doubled to 16 vol% to account for dissolution test uncertainty and differences between in-tank settling and laboratory testing. Savannah River Mission Completion (SRMC) is currently assessing the solids formed during salt dissolution as slurried sludge for hydrogen retention and release, which is driving flammability controls during salt dissolution activities. SRMC has requested SRNL perform a gas retention and release study to better understand the impact of the insoluble solids on waste tank flammability, and to provide a more accurate estimate of their ability to retain and release flammable gases.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2024

Tank Closure Cesium Removal Ion Exchange Column CST Characterization: SRNL-STI-2024-00072 (Rev.0) pdf

Savannah River Mission Completion (SRMC) recently suspended operation of the Tank Closure Cesium Removal (TCCR) system which utilized an ion exchange (IX) process to remove radioactive cesium from waste supernate. During the demonstration phase, a total of three batches of Tank 10H dissolved salt waste were processed through the original TCCR columns. Subsequently, dissolved salt waste from Tank 9H was processed through TCCR in a phase referred to as TCCR 1A with four new IX columns. All eight columns have now been moved to Interim Safe Storage (ISS). For each batch processed through the TCCR IX columns, SRNL performed a number of analyses on surface and variable depth samples as well as batch equilibrium contact tests (BECT) to determine equilibrium loadings of Cs on the crystalline silicotitanate (CST) IX media. The BECTs were performed by lowering “teabags” containing ~0.1 g of CST each into the tank for a period of at least 10 days. The teabags were then retrieved and sent to SRNL for digestion and analysis.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2025

High Energy Density Physics of Inertial Confinement Fusion Ablator Materials

The historic December 5, 2022 experiment at Lawrence Livermore National Lab’s (LLNL) National Ignition Facility (NIF) reached fusion energy ignition for the first time. This is the most important scientific breakthrough of the 21st century paves the way to future clean inertial fusion energy (IFE). The diamond (high density carbon (HDC)) ablator material used in this experiment displays detrimental effects due to the development of hydrodynamic instabilities at the diamond/fuel interface under shock compression. New alternatives to diamond ablators are required to step up the energy yield in ICF experiments. The unique combination of mechanical strength (approaching that of diamond), the ability to accommodate high-Z dopants (in contrast to diamond), and the tunability of the properties (through synthesis material with varying sp 3 content) make amorphous carbon (a-C) a promising material for next-generation IFE ablative capsules. However, despite its critical importance to the IFE program, the behavior of a-C carbon at extreme temperatures and pressures remains largely unexplored. The primary goals of this project were to perform groundbreaking dynamic compression experiments and predictive simulations to uncover the fundamental high-energy-density physics of amorphous carbon. Our goals were (1) to uncover the metastability range of amorphous carbon and probe phase transitions to diamond or metastable supercooled liquid carbon; (2) to acquire high-quality equation of state (EOS) data and develop an experimentally validated EOS from machine-learning MD simulations of the complex states of carbon; and (3) to uncover the complex behavior of carbon liquid in both thermodynamically stable and metastable supercooled states by accessing large areas of carbon phase diagram with amorphous samples with variable sp 3 content. Our proposed experimental program included measurements of equation of state and diffraction measurements using the Omega EP laser at the Laboratory of Laser Energetics at the University of Rochester. The theoretical/simulation program involved the development of machine-learning models of the complex response of amorphous carbon under dynamic compression by performing molecular dynamics simulations at experimental time and length scales using leadership class DOE supercomputers. Simulations guided experiments to observe predicted phenomena and acquire critical experimental data in specific pressure-temperature domains to validate theoretical models. This research delivered fundamental properties of novel amorphous carbon IFE ablator material, including phase diagram and EOS. These results will aid in IFE target design and implosion experiments. A unique combination of predictive simulations and dynamic and static experiments provided a highly inspirational intellectual environment for graduate students and postdocs involved in this project.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2019

Eddy Flux and Meteorology over Deciduous Forest, Prairie, and Soybean Ecosystems in Missouri, USA, during the Total Solar Eclipse of 2017

Eddy fluxes and meteorology data are reported at high temporal resolution for three flux tower sites in Mid-Missouri before, during, and after the Total Solar Eclipse of August 21, 2017. Mid-Missouri experienced up to 2 minutes and 40 seconds of totality at around solar noon during the eclipse (Fig. 1). The sites are located in deciduous oak-hickory forest, native prairie, and soybean ecosystems (Table 1 and Fig. 3). Eddy fluxes were computed using a wavelet-based approach that permitted the calculation of two-minute mean fluxes without losing low frequency flux contributions (Fig. 2). During the eclipse, standard meteorological variables were sampled and recorded at 5 second intervals. The two-minute means of fluxes and meteorology are reported. This data product includes three data files in NetCDF (*.nc) format, three data dictionary files and a file-level metadata file in comma separate (*.csv) format, and a user guide in PDF (*.pdf) format.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1973

Radiant source tracker independent of nonconstant irradiance

A tracker of a radiant source is disclosed. The tracker is composed of a sectored matrix of detectors whose output voltages correspond to their respective levels of irradiance. The voltages are each sampled during a variable length period and the resulting samples are shaped into triangular samples by an integration process. They are supplied to a demodulator which provides an output corresponding to the difference of the time-voltage product of appropriate combinations of the samples. This output, after filtering, represents the angle of incidence on the detectors with respect to a central axis. The triangular samples are also supplied to a demodulator whose output is an AGC voltage which is a function of the sum of the time-voltage integrals of the triangular samples.

Campbell, F. D.↗

NASA NTRS1976

Search for correlated radio and optical events in long-term studies of extragalactic sources

For the first time, long-term records of radio and optical fluxes of a large sample of variable extragalactic sources have been assembled and compared, with linear cross-correlation analysis being used to reinforce the visual comparisons. Only in the case of the BL Lac object OJ 287 is the correlation between radio and optical records strong. In the majority of cases there is no evidence of significant correlation, although nine sources show limited or weak evidence of correlation. The results do not support naive extrapolation of the expanding source model. The general absence of strong correlation between the radio and optical regions has important implications for the energetics of events occurring in such sources.

Pomphrey, R. B.↗

NASA NTRS1977

A comprehensive two-way Doppler noise model for near-real-time validation of Doppler data

Doppler noise generated within the tracking system is modeled as a function of the dominant variable-Doppler sample interval. Additionally, the relationship between media noise and Doppler samples interval is empirically determined, and the ratio of media noise for S- and X-band downlinks is solved for. These functional relationships are incorporated into the previous media noise modeling to obtain a comprehensive two-way Doppler noise model.

Berman, A. L.↗

NASA NTRS1978

Concentration-response data on toxicity of pyrolysis gases from six synthetic polymers

Concentration-response data are presented on the toxic effects of the pyrolysis gases from six synthetic polymers on Swiss Webster male mice, using a toxicity screening test method. The polymers consisted of one sample each of polycarbonate and polystyrene, and two samples each of polyethylene and acrylonitrile-butadiene-styrene (ABS). All six samples were evaluated using the rising temperature program, and three samples were evaluated using the fixed temperature program. The pyrolysis gases from polycarbonate, polyethylene, and ABS appeared to exhibit the concentration-response relationships commonly encountered in toxicology. The polystyrene sample gave variable results; probably due to poor reproducibility of the essentially anaerobic pyrolysis. Carbon monoxide seemed to be the principal toxicant in the pyrolysis gases from polycarbonate and polyethylene, but did not appear to be the principal toxicant in the pyrolysis gases from ABS.

Hilado, C. J.↗

NASA NTRS1978

Carbon, nitrogen and sulfur in Apollo 15, 16 and 17 rocks

Carbon, nitrogen and sulfur contents, as well as carbon isotopic compositions, were determined for seven lunar rocks from the Apollo 15, 16 and 17 missions. Sequential combustion at three temperatures was used to resolve terrestrial contamination from indigenous lunar volatiles. Nitrogen abundances averaged 0.4 micrograms/gram in the samples. The results of the sequential combustion analysis suggested that all the samples contained variable amounts of terrestrial carbon contamination prior to examination. Indigenous lunar carbon abundances ranging from 2.5 to 6 micrograms/gram were found. Thus the moon appears to be substantially depleted in nitrogen and carbon relative to the earth and C and H meteorites.

Des Marais, D. J.↗

NASA NTRS1979

Multistage variable probability forest volume inventory

An inventory scheme based on the use of computer processed LANDSAT MSS data was developed. Output from the inventory scheme provides an estimate of the standing net saw timber volume of a major timber species on a selected forested area of the Navajo Nation. Such estimates are based on the values of parameters currently used for scaled sawlog conversion to mill output. The multistage variable probability sampling appears capable of producing estimates which compare favorably with those produced using conventional techniques. In addition, the reduction in time, manpower, and overall costs lend it to numerous applications.

Anderson, J. E.↗

NASA NTRS1989

Modeling 2-D jets impinging on Stirling regenerators

The extent to which flow leaving Stirling coolers or heaters in the form of high-velocity jets penetrate the regenerator matrix is visually modeled using a computer program. Two-dimensional laminar jets are shown impinging on regenerator samples of variable permeability ranging from no matrix at all to matrices dense enough to stop the jet dead on. The results lend credibility to a simple tension for flow uniformity as a function of penetration depth.

Gedeon, David↗

NASA NTRS1992

Energy and radiation balance components for three grass surfaces near Kursk, Russia

The energy and radiation balance components were determined over three grass surfaces, located on the Streletskaya steppe during July 1991. The Bowen ratio energy balance method was used to determine the sensible and latent heat flux densities using six computer controlled systems. A total of 126 variables were sampled, including global, diffuse, and reflected solar radiation, long wave radiation (up and down), net radiation, photosynthetically active radiation above and below the vegetation, infrared surface temperatues, soil temperature and heat flow, air temperature and vapor pressure at two levels, wind speed and direction, and precipitation. The ranking of the sites from greatest to smallest for net radiation and latent heat flux density were preserve, mowed in 1990, and mowed in 1991. The ranking of the sites from greatest to smallest for sensible heat flux density were mowed in 1990, mowed in 1991, and preserve.

Fritschen, Leo J.↗

NASA NTRS2003

Bio-Optical and Remote Sensing Observations in Chesapeake Bay

The high temporal and spatial resolution of satellite ocean color observations will prove invaluable for monitoring the health of coastal ecosystems where physical and biological variability demands sampling scales beyond that possible by ship. However, ocean color remote sensing of Case 2 waters is a challenging undertaking due to the optical complexity of the water. The focus of this SIMBIOS support has been to provide in situ optical measurements from Chesapeake Bay (CB) and adjacent mid-Atlantic bight (MAB) waters for use in algorithm development and validation efforts to improve the satellite retrieval of chlorophyll (chl a) in Case 2 waters. CB provides a valuable site for validation of data from ocean color sensors for a number of reasons. First, the physical dimensions of the Bay (> 6,500 km2) make retrievals from satellites with a spatial resolution of approx. 1 km (i.e., SeaWiFS) or less (i.e., MODIS) reasonable for most of the ecosystem. Second, CB is highly influenced by freshwater flow from major rivers, making it a classic Case 2 water body with significant concentrations of chlorophyll, particulates and chromophoric dissolved organic matter (CDOM) that highly impact the shape of reflectance spectra.

Harding, Lawrence W., Jr.↗