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At least 217 records · Page 12

Hemodynamic and thermal responses to head and neck cooling in men and women

Personal cooling systems are used to alleviate symptoms of multiple sclerosis and to prevent increased core temperature during daily activities. The objective of this study was to determine the operating characteristics and the physiologic changes produced by short term use of one commercially available thermal control system. A Life Support Systems, Inc. Mark VII portable cooling system and a liquid cooling helmet were used to cool the head and neck regions of 12 female and 12 male subjects (25-55 yr) in this study. The healthy subjects, seated in an upright position at normal room temperature (approximately 21 degrees C), were tested for 30 min with the liquid cooling garment operated at its maximum cooling capacity. Electrocardiograms and scalp and intracranial blood flows were recorded periodically during each test sequence. Scalp, right and left ear, and oral temperatures and cooling system parameters were logged every 5 min. Scalp, right and left ear canal, and oral temperatures were all significantly (P <0.05) reduced by 30 min of head and neck cooling. Oral temperatures decreased approximately 0.2-0.6 degrees C after 30 min and continued to decrease further (approximately 0.1-0.2 degrees C) for a period of approximately 10 min after removal of the cooling helmet. Intracranial blood flow decreased significantly (P < 0.05) during the first 10 min of the cooling period. Both right and left ear temperatures in the women were significantly lower than those of the men during the cooling period. These data indicate that head and neck cooling may be used to reduce core temperature to that needed for symptomatic relief of both male and female multiple sclerosis patients. This study quantifies the operating characteristics of one liquid cooling garment as an example of the information needed to compare the efficiency of other garments operated under different test conditions.

NASA Center ARC↗

Hawai‘i Play Fairway (Final Report)

Most of Hawai'i's geothermal resources are blind—their manifestations, such as hot springs and steam vents, do not appear on the ground surface because the heated water flows far below. With the exception of $K\bar{i}lauea East Rift Zone$, in most areas of Hawai'i, high lateral permeability in the first kilometer below ground surface prevents surface thermal features from developing. As a methodology for discovering these blind resources, Play Fairway Analysis (PFA) involves finding potential locations of blind hydrothermal systems and describing potential geothermal sources in rift-zone settings. Using the PFA to find Hawai'i's geothermal resources, the University of Hawai'i (UH) conducted the Hawai‘i Play Fairway Project, Hawai'i's first statewide geothermal resource assessment since 1985. Sponsored by the U.S. Department of Energy, the Hawai'i Play Fairway Project provided an updated resource assessment, a roadmap for additional exploration activities, and the identification of areas for further exploration. Benefitting from UH's core competency in earth sciences and experienced geothermal researchers, the project comprised three phases. During the first phase, the team identified, compiled, and ranked existing geologic, groundwater, and geophysical datasets relevant to subsurface heat, fluid and permeability. Using a Bayesian statistical approach, the team developed a statistical methodology to integrate these data into a resource probability map. The team evaluated the confidence in the probability value and considered development viability of areas with geothermal resources. With these analyses, the team identified 10 locations in the Hawaiian Islands for exploration activities. For the second phase, the team collected new groundwater data in 10 locations across the state and new geophysical data on $L\bar{a}na‘i, Maui$, and central Hawai'i Island and modeled topographically induced stress to better characterize subsurface permeability. Analyzing the subsurface stresses, the team evaluated the potential for fracture-induced permeability. The team inverted the MT and gravity data to produce 3D models of resistivity and density, respectively, on $L\bar{a}na‘i$, across $Haleakal\bar{a}'s$ SW rift (Maui), and surrounding Mauna Kea (Hawai‘i Island). The team developed and applied a new method for incorporating depth information about resistivity, density, and potential for fracture-induced permeability into the statistical method for computing resource probability in these three focus areas. The team incorporated the new groundwater results with the new geophysical results and the calculations of potential for fracture-induced permeability to produce updated maps of resource probability and confidence. Through combining data from the first and second phases, the team determined locations for further exploration during the third phase. For MT and gravity surveys, the team recommended $Kaua'i's$ $L\bar{i}hu'e$ $Basin$, the east rift of $Maui's$ $Haleakal\bar{a}$ volcano, and the southwest rift of Hawai'i Island's Mauna Loa volcano. The MT and gravity surveys aimed to enable improved confidence in the resource potential in these locations. For drilling deep groundwater well(s), the team recommended Southeast Mauna Kea and $L\bar{a}na's$ $P\bar{a}l\bar{a}wai$ $Basin$. During the third phase, further exploration involved drilling a groundwater well in $L\bar{a}na's$ $P\bar{a}l\bar{a}wai$ $Basin$ and performing more geophysical surveys. We deepened an existing water well proximal to our target area on $L\bar{a}na'i$ due to funding constraints that precluded us from spudding a new well that would exceed 1km depth. Drilling was preceded by a number of substantial elements including: writing an Environmental Assessment and the subsequent legal process, performance of deviation logging, lowering a camera down the well, coordinating site preparation with $P\bar{u}lama$ $L\bar{a}na'i$, shipping the UH-owned rig interisland, procuring supplies, and leading 3 community meetings on $L\bar{a}na'i$. Drilling occurred 24/7 the entire month of June 2019 over which time $L\bar{a}na'i$ $Well$ 10 was deepened from 427 m to 1057 m, with continuous core collected. We measured a roughly linear temperature gradient averaging 42°C/km and a maximum bottom hole temperature of 66°C. This gradient is more than twice the background for Hawai'i and within a range of gradients measured in this depth range for some exploration wells within KERZ. We consider these results encouraging for $L\bar{a}na'i's$ resource potential and recommend following with a slim hole within $L\bar{a}na'i's$ caldera (our target zone) to ~ 2 km. Further, the positive implications such results have for the island of O‘ahu are substantial - the shield stage of O'ahu's volcanoes ended 1-2 My earlier. However, O'ahu uses more electricity than the rest of the islands combined, and the utility recently called for 500-700MW of firm, dispatchable renewable electricity on O'ahu by 2033. In Phase 3, we also collected limited new encouraging groundwater data, and updated our thoughts on the probabilities of fluid and permeability at resource depths (Pr F = 1; Pr P = mostly unconstrained). Ultimately, we advocate for using our final probability of heat, and confidence in this probability, to drive the next phase of exploration. We contend further development of geothermal in Hawai‘i will enable the state to achieve its 100% renewable policy objective and Hawai'i to transition off of fossil fuels through geothermal discovery and development. The project not only produced a large amount of data and expanded the existing knowledge of Hawai'i's geothermal resources, but also produced publications, theses, presentations, core photos, datasets, media reports, television interviews, community events, and a blog. Students and new professionals benefitted from the project's hands-on research experiences and educational opportunities and earned awards and recognition.

15 GEOTHERMAL ENERGY↗

The energy distributions of B supergiants in the Large Magellanic Cloud

It is shown that line-blanketed, LTE, plane-parallel model atmosphere calculations provide excellent fits to the ultraviolet-through-visual energy distributions of B supergiants in the Large Magellanic Cloud. The models were computed using Kurucz's (1979) ATLAS atmosphere program, but with lower gravities than were contained in Kurucz's published model grid. The ultraviolet continua of low gravity stars are found to be sensitive to changes in temperature and gravity. Measurements of Teff and log g for ten LMC B supergiants from model atmosphere fits to the energy distributions yield estimates of their radii, luminosities, and masses. Model atmosphere fits suggest that the late B supergiants have significantly lower masses than the earlier B types of the same luminosity, contrary to stellar evolution theory which predicts that B supergiants are in a post-core hydrogen burning phase and should evolve very quickly and at essentially constant mass.

Fitzpatrick, Edward L.↗

AmeriFlux FLUXNET-1F US-xUN NEON University of Notre Dame Environmental Research Center (UNDE)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xUN NEON University of Notre Dame Environmental Research Center (UNDE). This is the FLUXNET version of the carbon flux data for the site US-xUN NEON University of Notre Dame Environmental Research Center (UNDE) produced by applying the standard ONEFlux (1F) software. Site Description - NEON's Domain 5 core site is located at the University of Notre Dame Environmental Research Center (UNDERC) East. Straddling the border between Northern Wisconsin and Michigan’s Upper Peninsula, the UNDERC property comprises approximately 7500 acres and is maintained as an environmental education and research facility. UNDERC also has 30 lakes comprising 1350 acres, including Crampton Lake, a NEON aquatics site. Region-wide logging for pine in the late 1800s and early to mid-1900's led to clear cutting of most forested areas on the property. The main parcel was donated to the University in the 1930s. Timber harvest continued into the 1950s and later, leaving a mixture of successional forest regrowth. Since the 1970s, the site has been minimally managed to maintain access for recreational, educational and research goals.

Network), NEON (National Ecological Observatory↗

Computing Bottleneck Structures at Scale for High-Precision Network Performance Analysis

The Theory of Bottleneck Structures is a recently-developed framework for studying the performance of data networks. It describes how local perturbations in one part of the network propagate and interact with others. This framework is a powerful analytical tool that allows network operators to make accurate predictions about network behavior and thereby optimize performance. Previous work implemented a software package for bottleneck structure analysis, but applied it only to toy examples. In this work, we introduce the first software package capable of scaling bottleneck structure analysis to production-size networks. Here, we benchmark our system using logs from ESnet, the Department of Energy's high-performance data network that connects research institutions in the U.S. Using the previously published tool as a baseline, we demonstrate that our system achieves vastly improved performance, constructing the bottleneck structure graphs in 0.21 s and calculating link derivatives in 0.09 s on average. We also study the asymptotic complexity of our core algorithms, demonstrating good scaling properties and strong agreement with theoretical bounds. These results indicate that our new software package can maintain its fast performance when applied to even larger networks. They also show that our software is efficient enough to analyze rapidly changing networks in real time. Overall, we demonstrate the feasibility of applying bottleneck structure analysis to solve practical problems in large, real-world data networks.

benchmark↗

GBCGE Subsurface Database Explorer and APIs

This submission defines a DOI for the Great Basin Center for Geothermal Energy's (GBCGE) Subsurface Database Explorer web application and underlying data services, and acknowledges the INGENIOUS project as a major source of funding for data compilation and quality assurance. The GBCGE Subsurface Database Explorer is an interactive web mapping application that provides public access to the GBCGE Subsurface Database, and its collection of datasets pertinent to geothermal exploration, oil and gas exploration, critical mineral exploration, and other subsurface characterization for the Great Basin Region, western US. This is a living database, and will be continuously updated with new data and datasets as funding and motivations allow. The underlying database views that populate the web application are on an automated refresh schedule. Data sources and acknowledgements: We thank our partners with the Nevada Division of Minerals (NDOM), the Southern Methodist University (SMU), and Great Basin State Geological Surveys for their active efforts in data curation, schema design, and quality assurance. We also thank contributors among the USGS, Oregon Institute of Technology, State Divisions of Water Resources, State Divisions of Oil, Gas, and Minerals, and State Geological Surveys for open data availability and direct contributions made under the National Geothermal Data System (NGDS).

15 GEOTHERMAL ENERGY↗

Formation, early evolution, and gravitational stability of protoplanetary disks

The formation, viscous evolution, and gravitational stability of protoplanetary disks are investigated. The formation process is parameterized by the angular velocity of the molecular cloud core omega, while the viscous evolution is parameterized by the viscosity parameter alpha in the disk; in this study we consider a range of (0.4-6) x 10(exp -14)/s for omega and from 10(exp -5) to 10(exp -1) for alpha. The axisymmetric gravitational stabilities of the disks are checked using Toomre's criterion. The resulting disk surface temperature distribution, (d log T(sub s)/d log R) approximately = -0.6 (R is the cylindrical radius), can be attributed to two heating sources: the viscous heating dominant in the inner disk region, and the accretion shock heating dominant in the outer disk region. This surface temperature distribution matches that observed in many disks around young stellar objects. During the infall stage, disks with alpha less than 10(exp -1.5) become gravitationally unstable independent of omega. The gravitational instabilities occur at radii ranging from 5 to 40 AU. The ratio of the disk mass to the central star mass ranges from 0.2 to 0.5 at the times of instability, about 4 x 10(exp -5) x (omega/10(exp -14)/s)(exp -0.67) yr. Most disks with low alpha and high omega become gravitationally unstable during their formation phase.

Nakamoto, Taishi↗

BASS. XXV. DR2 Broad-line-based Black Hole Mass Estimates and Biases from Obscuration

We present measurements of broad emission lines and virial estimates of supermassive black hole masses (M BH ) for a large sample of ultrahard X-ray-selected active galactic nuclei (AGNs) as part of the second data release of the BAT AGN Spectroscopic Survey (BASS/DR2). Our catalog includes M BH estimates for a total of 689 AGNs, determined from the Hα, Hβ, Mg II λ2798, and/or C IV λ1549 broad emission lines. The core sample includes a total of 512 AGNs drawn from the 70 month Swift/BAT all-sky catalog. We also provide measurements for 177 additional AGNs that are drawn from deeper Swift/BAT survey data. We study the links between M BH estimates and line-of-sight obscuration measured from X-ray spectral analysis. We find that broad Hα emission lines in obscured AGNs ($\mathrm{log}({N}_{{\rm{H}}}/{\mathrm{cm}}^{-2})\gt 22.0$) are on average a factor of ${8.0}_{-2.4}^{+4.1}$ weaker relative to ultrahard X-ray emission and about ${35}_{-12}^{\,+7}$% narrower than those in unobscured sources (i.e., $\mathrm{log}({N}_{{\rm{H}}}/{\mathrm{cm}}^{-2})\lt 21.5$). This indicates that the innermost part of the broad-line region is preferentially absorbed. Consequently, current single-epoch M BH prescriptions result in severely underestimated (>1 dex) masses for Type 1.9 sources (AGNs with broad Hα but no broad Hβ) and/or sources with $\mathrm{log}({N}_{{\rm{H}}}/{\mathrm{cm}}^{-2})\gtrsim 22.0$. We provide simple multiplicative corrections for the observed luminosity and width of the broad Hα component (L[bHα] and FWHM[bHα]) in such sources to account for this effect and to (partially) remedy M BH estimates for Type 1.9 objects. As a key ingredient of BASS/DR2, our work provides the community with the data needed to further study powerful AGNs in the low-redshift universe.

79 ASTRONOMY AND ASTROPHYSICS↗

IUE observations of a hot DAO white dwarf: Implications for diffusion theory and photospheric stratification

Observations of the DAO white dwarf PG1210+533, including the first high dispersion spectrum of a hybrid H-He object of this nature were obtained by IUE. In contrast with hot DAs in the 50,000 K temperature range, PG1210+533 shows no narrow interstellar-like metal lines, in spite of an optically observed He/H abundance of 0.1. This lack of metal makes accretion from the ISM an unlikely source for the He in the PG1210+533 photosphere. A significant discovery in the high dispersion spectrum is the existence of a sharp, non-LTE like, core seen in the He II 1640 line. Such features are detected in DO white dwarfs. A small aperture SWP low dispersion observation reveals the Lyman alpha profile of PG1210+533 to be surprisingly weak and narrow. Fits of this profile using pure H models yielded a T(eff) = 56,000 K. Fits of the Balmer H gamma profile however, yield T(eff) = 42,300 K and log g = 8.5 + or - 0.5 for the same models. It is unlikely that homogeneously mixed H-He atmospheres can resolve the inconsistency between the Lyman alpha and H gamma features in this star. Stratified models involving thin H photospheres may be necessary to explain these results.

Holberg, J. B.↗

A Hubble Space Telescope study of the underlying white dwarf in the dwarf nova VW Hydri during quiescence

We have analyzed a far-ultraviolet spectrum of the dwarf nova VW Hyi obtained during quiescence with the Hubble Space Telescope Faint Object Spectrograph (HST FOS). The observation occurred 10 days after the return to optical quiescence from a superoutburst of VW Hyi. The spectrum reveals a very strong Stark-broadened Ly-alpha absorption with narrow geocoronal emission, and a very rich metallic absorption-line spectrum dominated by strong resonance absorption features of singly and doubly ionized silicon and carbon, the first solid identification of metallic absorption features arising in the accreted atmosphere of the white dwarf. We confirm the reported low-resolution IUE detection of the underlying white dwarf photosphere by Mateo & Szkody. A synthetic spectral analysis with hot, high-gravity LTE model atmospheres yields a best-fit model with the following parameters: T(sub eff) = 22,000 +/- 1000 K, log g = 8.0 +/- 0.3, with chemical abundances for oxygen of 0.3 times solar, for nitrogen of 5 times solar, and for all other heavy elements of 0.15 times solar. Based upon our absorption-line measurements of the observations at different orbital phases, we find no conclusive evidence of equivalent width variations with orbital phase. In the absence of any significant reduction of the white dwarf's core mass by past nova explosions, its lower limit cooling age is approximately 50 million years.

Sion, Edward M.↗

Periodic modulation of the atmosphere of Alpha Orionis

Alpha Orionis (Betelgeuse; M2 Iab) was monitored with IUE since 1984. Discovery of a 420-day periodic modulation of the flux in the optical and ultraviolet continua, and in the Mg II h and k line emission cores suggests that periodic photospheric pulsations were present from 1984 to 1986. This behavior continues through 1987. However, the general flux level of the ultraviolet continuum and the Mg II lines is decreasing, and the amplitude of the variation may be reduced. These decreases may be the emerging signature of an additional longer period. The density sensitive C II diagnostic, 2325.4/2328.1, indicates the chromospheric densities range between log N(sub e) (cm-3) = 8.7 and 9.5, but periodicities are not evident.

Dupree, A. K.↗

REQUIEM-2D Methodology: Spatially Resolved Stellar Populations of Massive Lensed Quiescent Galaxies from Hubble Space Telescope 2D Grism Spectroscopy

We present a novel Bayesian methodology to jointly model photometry and deep Hubble Space Telescope 2D grism spectroscopy of high-redshift galaxies. Our requiem2d code measures both unresolved and resolved stellar populations, ages, and star formation histories (SFHs) for the ongoing REsolving QUIEscent Magnified (REQUIEM) Galaxies Survey, which targets strong gravitationally lensed quiescent galaxies at z ∼ 2. We test the accuracy of requiem2d using a simulated sample of massive galaxies at z ∼ 2 from the Illustris cosmological simulation and find that we recover the general trends in SFH and median stellar ages. We further present a pilot study for the REQUIEM Galaxies Survey: MRG-S0851, a quintuply imaged, massive (log M ⁎ / M ʘ = 11.02 ± 0.04) red galaxy at z = 1.883 ± 0.001. With an estimated gravitational magnification of µ = 5.7 - 0.2 + 0.4, we sample the stellar populations on 0.6 kpc physical size bins. The global mass-weighted median age is constrained to be 1.8 - 0.2 + 0.3 Gyr, and our spatially resolved analysis reveals that MRG-S0851 has a flat age gradient in the inner 3 kpc core after taking into account the subtle effects of dust and metallicity on age measurements, favoring an early formation scenario. The analysis for the full REQUIEM-2D sample will be presented in a forthcoming paper with a beta release of the requiem2d code.

Strong gravitational lensing↗

Stellar population models based on the SDSS-IV MaStar library of stellar spectra – I. Intermediate-age/old models

ABSTRACT We use the first release of the SDSS/MaStar stellar library comprising ∼9000, high S/N spectra, to calculate integrated spectra of stellar population models. The models extend over the wavelength range 0.36–1.03 µm and share the same spectral resolution ($R\sim 1800$) and flux calibration as the SDSS-IV/MaNGA galaxy data. The parameter space covered by the stellar spectra collected thus far allows the calculation of models with ages and chemical composition in the range $\rm {\mathit{ t}\gt 200 \,Myr, -2 \lt = [Z/H] \lt = + 0.35}$, which will be extended as MaStar proceeds. Notably, the models include spectra for dwarf main-sequence stars close to the core H-burning limit, as well as spectra for cold, metal-rich giants. Both stellar types are crucial for modelling λ > 0.7 µm absorption spectra. Moreover, a better parameter coverage at low metallicity allows the calculation of models as young as 500 Myr and the full account of the blue horizontal branch phase of old populations. We present models adopting two independent sets of stellar parameters (Teff, log g, [Z/H]). In a novel approach, their reliability is tested ‘on the fly’ using the stellar population models themselves. We perform tests with Milky Way and Magellanic Clouds globular clusters, finding that the new models recover their ages and metallicities remarkably well, with systematics as low as a few per cent for homogeneous calibration sets. We also fit a MaNGA galaxy spectrum, finding residuals of the order of a few per cent comparable to the state-of-art models, but now over a wider wavelength range.

Maraston, C.↗

ODIN: Characterizing the Three-dimensional Structure of Two Protocluster Complexes at z = 3.1

We present a detailed study of the 3D morphology of two extended associations of multiple protoclusters at z = 3.1. These protocluster "complexes," designated COSMOS-z3.1-A and COSMOS-z3.1-C, are the most prominent overdensities of z = 3.1 Lyα emitters (LAEs) identified in the COSMOS field by the One-hundred-deg$^{2}$ DECam Imaging in Narrowbands survey. These protocluster complexes have been followed up with extensive spectroscopy from Keck, Gemini, and DESI. Using a probabilistic method that combines photometrically selected and spectroscopically confirmed LAEs, we reconstruct the 3D structure of these complexes on scales of ≈50 cMpc. We validate our reconstruction method using the IllustrisTNG300-1 cosmological hydrodynamical simulation and show that it consistently outperforms approaches relying solely on spectroscopic data. The resulting 3D maps reveal that both complexes are irregular and elongated along a single axis, emphasizing the impact of sightline on our perception of structure morphology. The complexes consist of multiple density peaks, 10 in COSMOS-z3.1-A and 4 in COSMOS-z3.1-C. The former is confirmed to be a proto-supercluster, similar to Hyperion at z = 2.4 but observed at an even earlier epoch. Multiple "tails" connected to the cores of the density peaks are seen, likely representing cosmic filaments feeding into these extremely overdense regions. The 3D reconstructions further provide strong evidence that Lyα blobs preferentially reside in the outskirts of the highest density regions. Descendant mass estimates of the density peaks suggest that COSMOS-z3.1-A and COSMOS-z3.1-C will evolve to become ultramassive structures by z = 0, with total masses log ( M / M ,⊙ ,) ≳ 15.3 , exceeding that of Coma.

Ramakrishnan, Vandana [Purdue U., West Lafayette] ↗

Photoionization modeling of Magellanic Cloud planetary nebulae. I

The results of self-consistent photoionization modeling of 38 Magellanic Cloud PNe are presented and used to construct an H-R diagram for the central stars and to obtain both the nebular chemical abundances and the physical parameters of the nebulae. T(eff)s derived from nebular excitation analysis are in agreement with temperatures derived by the classical Zanstra method. There is a linear correlation between log T(eff) and the excitation class. The majority of the central stars in the sample with optically thick nebulae have masses between 0.55 and 0.7 solar mass and are observed during their hydrogen-burning excursion toward high temperatures. Optically thin objects are found scattered throughout the H-R diagram, but tend to have a somewhat smaller mean mass. Type I PN are found to have high core masses and to lie on the descending branch of the evolutionary tracks. The nebular mass of the optically thick objects is closely related to the nebular radius, and PN with nebular masses over one solar are observed.

Dopita, M. A.↗

Producing the universal spectrum of cosmological gamma-ray bursts with the Klein-Nishina cross section

A power-law spectrum attenuated through Compton scattering by an optically thick medium produces spectra that have a characteristic energy of several hundred keV. Add a redshift, and one finds that this model can qualitatively reproduce the color-color diagrams found for individual gamma-ray bursts. This model is easily tested through model fits to burst spectra and through comparisons of the parameters derived from model fits to the limits on parameters derived from the burst log N - log P(sub max) curve. The heavy attenuation makes the amount of energy released in the burst approximately equal to 10(exp 3) times larger than is inferred from the observed flux. The requirements of high optical depth and no photon-photon pair creation place a lower limit on the size of the scattering region. This size suggests that the attenuation occurs in giant molecular clouds in the cores of galaxies. This indicates that gamma-ray bursts are probably from supermassive black holes. If the Lorentz factor of the radiation source is large, the optical depth, and therefore the hardness ratio of a burst, can change over the duration of the burst.

Brainerd, J. J.↗

FutureGen 2.0 Technical Data

This is a comprehensive collection of all original surface and subsurface technical data, as well as various derivative subsurface models, collected from the FutureGen 2.0 project. This collection of data has been vetted for confidential or sensitive documents.

CCUS↗

Generating Co-expression Networks for Three Cyanobacteria: Synechococcus sp. PCC 7942, Synechococcus sp. PCC 7002, Synechocystis sp. PCC 6803

Cyanobacteria are photosynthetic organisms capable of high growth rate and represent a promising bioplatform for harnessing the sun’s energy to make biofuel. Additionally, the process of photosynthesis absorbs CO2 from the environment. Understanding the metabolic processes involved in photosynthesis could lead to solutions to the recent rise of CO2 concentration in Earth’s atmosphere and the associated climate change. More research on the transcriptional regulation of these cells is needed to learn how to harness the untapped potential of cyanobacteria for these applications. Transcriptional analysis via RNA-seq provides an understanding of how gene expression changes at the mRNA level under diverse growing conditions. I systematically collected and analyzed RNA-Seq data obtained under a variety of conditions and available on the NCBI database for three cyanobacteria model organisms: Synechococcus elongatus sp. PCC 7942, Synechococcus sp. PCC 7002, and Synechocystis sp. PCC 6803. For each organism, the data was mapped to a reference genome to characterize the RNA expression profile. Samples were checked for quality based on the number of reads and the correlation of the expression profile between labeled replicates. All samples were transformed into transcripts per million reads, followed by a log transformation to account for the wide range of sample sizes. Gene co-expression networks were generated and analyzed for each species using Cytoscape. These networks provide a base level of gene expression for each species. The network topology and high-betweeness nodes of these networks need to be analyzed further to provide insight on potential ways to harness cyanobacteria genetics. Additionally, these datasets can be used together to form a core genome network analysis- one that includes only the genes that are homologous between the three species. This project has prepared the way for a more in-depth study on photosynthetic microbes on a genetic level.

59 BASIC BIOLOGICAL SCIENCES↗