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At least 217 records · Page 12

Generation of dynamo magnetic fields in thin Keplerian disks

The combined action of nonuniform rotation and helical convection in protoplanetary disks, in the Galaxy, or in accretion disks surrounding black holes and other compact objects, enables an alpha-omega dynamo to generate a large-scale magnetic field. In this paper, the properties of such magnetic fields are investigated using a two-dimensional, partially numerical method. The structures of the lowest-order steady state and oscillatory modes are calculated for two kinds of external boundary conditions. A quadruple, steady state, highly localized mode is the most easily excited for low values of the dynamo number. The results indicate that, except under special conditions, disk dynamo modes tend to consist of relatively localized rings structures. For large values of the dynamo number, the magnetic field consists of a number of quasi-independent, spatially localized modes generated in various concentric rings filling the disk inward of a dynamo generation 'front'.

Stepinski, T. F.↗

Peptides at Membrane Surfaces and their Role in the Origin of Life

All ancestors of contemporary cells (protocells) had to transport ions and organic matter across membranous walls, capture and utilize energy and transduce environmental signals. In modern organisms, all these functions are preformed by membrane proteins. We make the parsimonious assumption that in the protobiological milieu the same functions were carried out by their simple analogs - peptides. This, however, required that simple peptides could self-organize into ordered, functional structures. In a series of detailed, molecular-level computer simulations we demonstrated how this is possible. One example is the peptide (LSLLLSL)3 which forms a trameric bundle capable of transporting protons across membranes. Another example is the transmembrane pore of the influenza M2 protein. This aggregate of four identical alpha-helices, each built of 25 amino acids, forms an efficient and selective voltage-gated proton channel. Our simulations explain the gating mechanism in this channel. The channel can be re-engineered into a simple proton pump.

Pohorille, Andrew↗

Tubulinlike protein from Spirochaeta bajacaliforniensis

Tubulin proteins are the fundamental subunits of all polymeric microtubule-based eukaryotic structures. Long, hollow structures each composed of 13 protofilaments as revealed by electron microscopy, microtubules (240 angstroms in diameter) are nearly ubiquitous in eukaryotes. These proteins have been the subject of intense biochemical and biophyiscal interest since the early 1970s and are of evolutionary interest as well. If tubulin-based structures (i.e., neurotubules, mitotic spindle tubules, centrioles, kinetosomes, axonemes, etc.) evolved from spirochetes by way of motility symbioses, tubulin homologies with spirochete proteins should be detectable. Tubulin proteins are widely thought to be limited to eukaryotes. Yet both azotobacters and spirochetes have shown immunological cross-reactivity with antitubulin antibodies. In neither of these studies was tubulin isolated nor any specific antigen identified as responsible for the immunoreactivity. Furthermore, although far less uniform in structure than eukaryotic microtubules, various cytoplasmic fibers and tubules (as seen by electron microscopy) have been reported in several types of prokaryotes (e.g., Spirochaeta; large termite spirochetes; treponemes; cyanobacteria; and Azotobacter. This work forms a part of our long-range study of the possible prokaryotic origin of tubulin and microtubules. Spirochetes are helically shaped gram-negative motile prokaryotes. They differ from all other bacterial in that the position of their flagella is periplasmic: their flagella lie between the inner and outer membranes of the gram-negative cell wall. Some of the largest spirochetes have longitudinally aligned 240 angstrom microtubules. Unfortunately, in spite of many attempts, all of the larger spirochetes (family Pillotaceae) with well-defined cytoplasmic tubules and antitubulin immunoreactivity are not cultivable. However, a newly described spirochete species (Spirochaeta bajacaliforniensis) possessing cytoplasmic fibers displays antitubulin immunoreactivity in whole-cell preparations. Since preliminary observations suggested that Spirochaeta bajacaliforniensis proteins may be related to eukaryotic tubulins, their characterization was undertaken. Brain tubulin can be purified by utilizing its ability to polymerize at warm temperatures and to depolymerize in the cold. After several cycles of sedimentation and redissolution the microtubule fraction is comprised of 75% tubulin and 20% high molecular mass microtubule-associated proteins (MAPs). In this paper we report that components of cell lysates, prepared from a spirochete that contains cytoplasmic fibers (Spirochaeta bajacaliforniensis), also exhibit the property of temperature-dependent cyclical sedimentation. Additionally we report the identification and characterization of the polypeptide responsible for cross-reactivity with antitubulin antiserum.

Non-NASA Center↗

Tubulinlike protein from Spirochaeta bajacaliforniensis

Tubulin proteins are the fundamental subunits of all polymeric microtubule-based eukaryotic structures. Long, hollow structures each composed of 13 protofilaments as revealed by electron microscopy, microtubules (240 angstroms in diameter) are nearly ubiquitous in eukaryotes. These proteins have been the subject of intense biochemical and biophysical interest since the early 1970s and are of evolutionary interest as well. If tubulin-based structures (i.e., neurotubules, mitotic spindle tubules, centrioles, kinetosomes, axonemes, etc.) evolved from spirochetes by way of motility symbioses, tubulin homologies with spirochete proteins should be detectable. Tubulin proteins are widely thought to be limited to eukaryotes. Yet both azotobacters and spirochetes have shown immunological cross-reactivity with anitubulin antibodies. In neither of these studies was tubulin isolated nor any specific antigen identified as responsible for the immunoreactivity. Furthermore, although far less uniform in structure than eukaryotic microtubules, various cytoplasmic fibers and tubules (as seen by electron microscopy) have been reported in several types of prokaryotes (e.g., Spirochaeta; large termite spirochetes; treponemes; cyanobacteria; and Azotobacter. This work forms a part of our long-range study of the possible prokaryotic origin of tubulin and microtubules. Spirochetes are helically shaped gram-negative motile prokaryotes. They differ from all other bacteria in that the position of their flagella is periplasmic: their flagella lie between the inner and outer membranes of the gram-negative cell wall. Some of the largest spirochetes have longitudinally aligned 240 angstroms microtubules. Unfortunately, in spite of many attempts, all of the larger spirochetes (family Pillotaceae) with well-defined cytoplasmic tubules and antitubulin immunoreactivity are not cultivable. However, a newly described spirochete species (Spirochaeta bajacaliforniensis) possessing cytoplasmic fibers displays antitubulin immunoreactivity in whole-cell preparations. Since preliminary observations suggested that Spirochaeta bajacaliforniensis proteins may be related to eukaryotic tubulins, their characterization was undertaken. Brain tubulin can be purified by utilizing its ability to polymerize at warm temperatures and to depolymerize in the cold. After several cycles of sedimentation and redissolution the microtubule fraction is composed of 75% tubulin and 20% high molecular mass microtubule-associated proteins (MAPs). In this paper we report that components of cell lysates, prepared from a spirochete that contains cytoplasmic fibers (Spirochaeta bajacaliforniensis), also exhibit the property of temperature-dependent cyclical sedimentation. Additionally we report the identification and characterization of the polypeptide responsible for cross-reactivity with antitubulin antiserum.

Non-NASA Center↗

Optical Polarization and Spectral Variability in the M87 Jet

During the last decade, M87's jet has been the site of an extraordinary variability event, with one knot (HST-1) increasing by over a factor 100 in brightness. Variability was also seen on timescales of months in the nuclear flux. Here we discuss the optical-UV polarization and spectral variability of these components, which show vastly different behavior. HST -1 shows a highly significant correlation between flux and polarization, with P increasing from approx 20% at minimum to > 40% at maximum, while the orientation of its electric vector stayed constant. HST-l's optical-UV spectrum is very hard (alpha(sub uv-0) approx. 0.5, F(sub v) varies as (v(exp -alpha)), and displays "hard lags" during epochs 2004.9-2005.5, including the peak of the flare, with soft lags at later epochs. We interpret the behavior of HST-1 as enhanced particle acceleration in a shock, with cooling from both particle aging and the relaxation of the compression. We set 2alpha upper limits of 0.5 delta parsecs and 1.02c on the size and advance speed of the flaring region. The slight deviation of the electric vector orientation from the jet PA, makes it likely that on smaller scales the flaring region has either a double or twisted structure. By contrast, the nucleus displays much more rapid variability, with a highly variable electric vector orientation and 'looping' in the (I, P) plane. The nucleus has a much steeper spectrum ((alpha(sub uv-0) approx. 1.5) but does not show UV-optical spectral variability. Its behavior can be interpreted as either a helical distortion to a steady jet or a shock propagating through a helical jet.

Perlman, Eric S.↗

Vapor Cooling of a Structural Skirt for a Large-Scale Hydrogen Tank

The demonstration of vapor cooling on a structural skirt was one of the main objectives of the Structural Heat Intercept, Insulation, and Vibration Evaluation Rig (SHIIVER) testing. SHIIVER consisted of a 4-meter diameter stainless steel tank with an aluminum forward skirt. The forward skirt was cooled by directing effluent vapor from the tank through two flow channels that each went 360 degrees around the interior of the skirt in a helical pattern. Flow rates, temperatures, and pressures in the system were measured allowing for the calculation of heat load removed via cooling stream and heat load reduction into the tank. Testing occurred at fill levels between 25% and 90% full using both liquid hydrogen and liquid nitrogen. Boil-off rate was varied independent of the skirt performance by adding multilayer insulation over the spray-on-foam insulation on the tank domes, while leaving the barrel insulated only with spray-on-foam. The results from the testing, which demonstrate vapor cooling reversed heat flow from the skirt into the tank and reduces total propellant heat load by as much as 19%, are analyzed and discussed.

Cryogenic Fluid Management↗

A predictor-corrector technique for visualizing unsteady flow

We present a method for visualizing unsteady flow by displaying its vortices. The vortices are identified by using a vorticity-predictor pressure-corrector scheme that follows vortex cores. The cross-sections of a vortex at each point along the core can be represented by a Fourier series. A vortex can be faithfully reconstructed from the series as a simple quadrilateral mesh, or its reconstruction can be enhanced to indicate helical motion. The mesh can reduce the representation of the flow features by a factor of one thousand or more compared with the volumetric dataset. With this amount of reduction it is possible to implement an interactive system on a graphics workstation to permit a viewer to examine, in three dimensions, the evolution of the vortical structures in a complex, unsteady flow.

Banks, David C.↗

Numerical simulation of channel flow transition, resolution requirements and structure of the hairpin vortex

Three-dimensional, nonlinear numerical simulations are presented for the K-type and H-type transitions for channel flow. There are two objectives. The first is to establish firmly the resolution requirements for the various stages in the transition process. Comparisons between calculations on various grids suggest a set of guidelines for maintaining a physically meaningful calculation. The second objective is to map out the structure of the hairpin vortices which arise in K-type and H-type transitions in channel flow, to the latest stage currently feasible. Flow field details are presented for both a subcritical Reynolds number of 1500 and a supercritical Reynolds number of 8000. The diagnostics include illustrations of the vertical shear, streamwise and spanwise vorticity, helicity, vortex stretching, and vortex diffusion fields.

Krist, Steven E.↗

Fast-Running Aeroelastic Code Based on Unsteady Linearized Aerodynamic Solver Developed

The NASA Glenn Research Center has been developing aeroelastic analyses for turbomachines for use by NASA and industry. An aeroelastic analysis consists of a structural dynamic model, an unsteady aerodynamic model, and a procedure to couple the two models. The structural models are well developed. Hence, most of the development for the aeroelastic analysis of turbomachines has involved adapting and using unsteady aerodynamic models. Two methods are used in developing unsteady aerodynamic analysis procedures for the flutter and forced response of turbomachines: (1) the time domain method and (2) the frequency domain method. Codes based on time domain methods require considerable computational time and, hence, cannot be used during the design process. Frequency domain methods eliminate the time dependence by assuming harmonic motion and, hence, require less computational time. Early frequency domain analyses methods neglected the important physics of steady loading on the analyses for simplicity. A fast-running unsteady aerodynamic code, LINFLUX, which includes steady loading and is based on the frequency domain method, has been modified for flutter and response calculations. LINFLUX, solves unsteady linearized Euler equations for calculating the unsteady aerodynamic forces on the blades, starting from a steady nonlinear aerodynamic solution. First, we obtained a steady aerodynamic solution for a given flow condition using the nonlinear unsteady aerodynamic code TURBO. A blade vibration analysis was done to determine the frequencies and mode shapes of the vibrating blades, and an interface code was used to convert the steady aerodynamic solution to a form required by LINFLUX. A preprocessor was used to interpolate the mode shapes from the structural dynamic mesh onto the computational dynamics mesh. Then, we used LINFLUX to calculate the unsteady aerodynamic forces for a given mode, frequency, and phase angle. A postprocessor read these unsteady pressures and calculated the generalized aerodynamic forces, eigenvalues, and response amplitudes. The eigenvalues determine the flutter frequency and damping. As a test case, the flutter of a helical fan was calculated with LINFLUX and compared with calculations from TURBO-AE, a nonlinear time domain code, and from ASTROP2, a code based on linear unsteady aerodynamics.

Reddy, T. S. R.↗

The Solar Dynamo

The solar dynamo is the process by which the Sun's magnetic field is generated through the interaction of the field with convection and rotation. In this, it is kin to planetary dynamos and other stellar dynamos. Although the precise mechanism by which the Sun generates its field remains poorly understood despite decades of theoretical and observational work, recent advances suggest that solutions to this solar dynamo problem may be forthcoming. Two basic processes are involved in dynamo activity. When the fluid stresses dominate the magnetic stresses (high plasma beta = 8(pi)rho/B(sup 2)), shear flows can stretch magnetic field lines in the direction of the shear (the "alpha effect") and helical flows can lift and twist field lines into orthogonal planes (the "alpha effect"). These two processes can be active anywhere in the solar convection zone but with different results depending upon their relative strengths and signs. Little is known about how and where these processes occur. Other processes, such as magnetic diffusion and the effects of the fine scale structure of the solar magnetic field, pose additional problems.

Hathaway, David H.↗

Spreading Characteristics of Compressible Jets from Nozzles of Various Geometries

The spreading characteristics of jets from several asymmetric nozzles, and a set of rectangular orifices are compared, covering a jet Mach number range of 0.3-2.0. The effect of 'tabs' for a rectangular and a round nozzle is also included in the comparison. Compared to a round jet, the jets from the asymmetric nozzles spread only slightly more at subsonic conditions whereas at supersonic conditions, when 'screech' occurs, they spread much more. The dynamics of the azimuthal vortical structures of the jet, organized and intensified under the screeching condition, are thought to be responsible for the observed effect at supersonic conditions. Curiously, the jet from a 'lobed' nozzle spreads much less at supersonic condition compared to all other cases; this is due to the absence of screech with this nozzle. Screech stages inducing flapping, rather than varicose or helical, flow oscillation cause a more pronounced jet spreading. At subsonic conditions, only a slight increase in jet spreading with the asymmetric nozzles contrasts previous observations by others. The present results show that the spreading of most asymmetric jets is not much different from that of a round jet. This inference is further supported by data from the rectangular orifices. In fact, jets from the orifices with small aspect ratio (AR) exhibit virtually no increase in the spreading. A noticeable increase commences only when AR is larger than about 10. Thus, 'shear layer perimeter stretching', achieved with a larger AR for a given cross-sectional area of the orifice, by itself, proves to be a relatively inefficient mechanism for increasing jet spreading. In contrast, the presence of streamwise vortices or 'natural excitation' can cause a significant increase - effects that might explain the observations in the previous investigations. Thus far, the biggest increase in jet spreading is observed with the tabs. This is true in the subsonic regime, as well as in the supersonic regime, in spite of the fact that screech is eliminated by the tabs. The characteristic spreading of the tabbed jets is explained by the induced motion of the tab-generated streamwise vortex pairs. The tabs, however, incur thrust loss; the flow blockage and loss in thrust coefficient, vis-a-vis the spreading increase, are evaluated for various configurations.

Zaman, K. B. M. Q.↗

The Eruption of a Magnetic Flux Rope Observed By Solar Orbiter and Parker Solar Probe

Magnetic flux ropes are a key component of coronal mass ejections, forming the core of these eruptive phenomena. However, determining whether a flux rope is present prior to eruption onset and, if so, the rope’s handedness and the number of turns that any helical field lines make is difficult without magnetic field modelling or in-situ detection of the flux rope. We present two distinct observations of plasma flows along a filament channel on 4 and 5 September 2022 made using the Solar Orbiter spacecraft. Each plasma flow exhibited helical motions in a right-handed sense as the plasma moved from the source active region across the solar disk to the quiet Sun, suggesting that the magnetic configuration of the filament channel contains a flux rope with positive chirality and at least one turn. The length and velocity of the plasma flow increased from the first to the second observation, suggesting evolution of the flux rope, with the flux rope subsequently erupting within ∼5 hours of the second plasma flow. The erupting flux rope then passed over the Parker Solar Probe spacecraft during its Encounter 13, enabling in-situ diagnostics of the structure. Although complex and consistent with the flux rope erupting from underneath the heliospheric current sheet, the in-situ measurements support the inference of a right-handed flux rope from remote-sensing observations. These observations provide a unique insight into the eruption and evolution of a magnetic flux rope near the Sun.

Dynamics↗

Dynamics of coherent structures in a plane mixing layer

An incompressible, time developing 3-D mixing layer with idealized initial conditions was simulated numerically. Consistent with the suggestions from experimental measurements, the braid region between the dominant spanwise vortices or rolls develops longitudinal vortices or ribs, which are aligned upstream and downstream of a roll and produce spanwise distortion of the rolls. The process by which this distortion occurs is explained by studying a variety of quantities of dynamic importance (e.g., production of enstrophy, vortex stretching). Other quantities of interest (dissipation, helicity density) are also computed and discussed. The currently available simulation only allows the study of the early evolution (before pairing) of the mixing layer. New simulations in progress will relieve this restriction.

Hussain, Fazle↗

Modeling study on the cleavage step of the self-splicing reaction in group I introns

A three-dimensional model of the Tetrahymena thermophila group I intron is used to further explore the catalytic mechanism of the transphosphorylation reaction of the cleavage step. Based on the coordinates of the catalytic core model proposed by Michel and Westhof (Michel, F., Westhof, E. J. Mol. Biol. 216, 585-610 (1990)), we first converted their ligation step model into a model of the cleavage step by the substitution of several bases and the removal of helix P9. Next, an attempt to place a trigonal bipyramidal transition state model in the active site revealed that this modified model for the cleavage step could not accommodate the transition state due to insufficient space. A lowering of P1 helix relative to surrounding helices provided the additional space required. Simultaneously, it provided a better starting geometry to model the molecular contacts proposed by Pyle et al. (Pyle, A. M., Murphy, F. L., Cech, T. R. Nature 358, 123-128. (1992)), based on mutational studies involving the J8/7 segment. Two hydrated Mg2+ complexes were placed in the active site of the ribozyme model, using the crystal structure of the functionally similar Klenow fragment (Beese, L.S., Steitz, T.A. EMBO J. 10, 25-33 (1991)) as a guide. The presence of two metal ions in the active site of the intron differs from previous models, which incorporate one metal ion in the catalytic site to fulfill the postulated roles of Mg2+ in catalysis. The reaction profile is simulated based on a trigonal bipyramidal transition state, and the role of the hydrated Mg2+ complexes in catalysis is further explored using molecular orbital calculations.

NASA Discipline Exobiology↗

On the Physical Nature of the So-Called Prominence Tornadoes

The term ‘tornado’ has been used in recent years to describe several solar phenomena, from large-scale eruptive prominences to small-scale photospheric vortices. It has also been applied to the generally stable quiescent prominences, sparking a renewed interest in what historically was called ‘prominence tornadoes’. This paper carries out an in-depth review of the physical nature of ‘prominence tornadoes’, where their name subconsciously makes us think of violent rotational dynamics. However, after careful consideration and analysis of the published observational data and theoretical models, we conclude that ‘prominence tornadoes’ do not differ in any substantial way from other stable solar prominences. There is simply no unequivocal observational evidence of sustained and coherent rotational movements in quiescent prominences that would justify a distinct category of prominences sharing the name with the well-known atmospheric phenomenon. The visual impression of the column-like silhouettes, the perceived helical motions, or the suggestive Doppler-shift patterns all have a simpler, more likely explanation. They are a consequence of projection effects combined with the presence of oscillations and/or counter-streaming flows. ‘Prominence tornadoes’ are thus just manifestations of the complex nature of solar prominences when observed in specific projections. These coincidental viewing angles, together with the presence of fine-structure dynamics and simple yet profoundly distorting projection effects, may sometimes play havoc with our intuitive understanding of perceived shapes and motions, leading to the incorrect analogy with atmospheric tornadoes.

Stanislav Gunar↗

Processed-induced defects in EFG ribbons

The defect structure of processed edge defined film-fed growth (EFG) silicon ribbons was studied using a variety of electron microscopic techniques. Comparison between the present results and previous studies on as-grown ribbons has shown that solar cell processing introduces additional defects into the ribbons. The creation of point defects during high temperature phosphorus diffusion induces dislocation climb, resulting in the formation of dislocation helices in the diffused layer.

Cunningham, B.↗

Microscale Processes Determining Macroscale Evolution of Magnetic Flux Tubes along Earth’s Magnetopause

An important process affecting solar wind-Earth’s magnetosphere coupling is non-steady dayside magnetic reconnection, observationally evidenced by a flux-transfer-event (FTE) that shows a bipolar variation of the magnetic field component normal to the magnetopause. FTEs often consist of two interlinked flux tubes, but, local kinetic processes between the flux tubes are not understood in the context of the FTE structuring, evolution, and impact. An FTE observed by MMS on 18 December 2017 consisted of two flux tubes of different topology. One includes field lines with ends connected to the northern and southern hemispheres while the other includes field lines with both ends connected to the magnetosheath. Reconnection occurring at the flux-tube interface indicates how interacting flux tubes evolve into a flux rope with helical magnetic topology that is either closed or open. This study demonstrates a new aspect of how micro-to meso-scale dynamics occurring within FTEs determines their macroscale characteristics and evolution.

Solar-terrestrial interactions↗

The effect of an unsteady three-dimensional wake on elastic blade-flapping eigenvalues in hover

This paper describes the formulation of a finite-state inflow model based on an acceleration potential and a helical wake geometry. The states of the model are coefficients of an inflow expansion in terms of a Fourier series (azimuthally) and of special polynomials (radially). The integrals over the wake are done in closed-form to obtain a set of ordinary differential equations for the inflow coefficients. The forcing functions for these equations are generalized forces which are integrals of the blade loading exactly as in structural dynamics. This model implicitly includes (for the hover case) Prandtl-Goldstein tip losses, dynamic inflow, and Theodorsen/Loewy lift deficiency. Thus, it is a fully three-dimensional unsteady wake model. Here, this model is coupled with elastic-blade equations in hover and eigenvalues are found. The results show that the three-dimensional wake has a large effect on the flap damping of all modes.

Peters, David A.↗