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At least 217 records · Page 12

DeepPhenoMem V1.0: deep learning modelling of canopy greenness dynamics accounting for multi-variate meteorological memory effects on vegetation phenology

Abstract. Vegetation phenology plays a key role in controlling the seasonality of ecosystem processes that modulate carbon, water and energy fluxes between the biosphere and atmosphere. Accurate modelling of vegetation phenology in the interplay of Earth's surface and the atmosphere is thus crucial to understand how the coupled system will respond to and shape climatic changes. Phenology is controlled by meteorological conditions at different timescales: on the one hand, changes in key meteorological variables (temperature, water, radiation) can have immediate effects on the vegetation development; on the other hand, phenological changes can be driven by past environmental conditions, known as memory effects. However, the processes governing meteorological memory effects on phenology are not completely understood, resulting in their limited performance of vegetation phenology represented in land surface models. A deep learning model, specifically a long short-term memory network (LSTM), has the potential to capture and model the meteorological memory effects on vegetation phenology. Here, we apply the LSTM to model the vegetation phenology using meteorological drivers and high-temporal-resolution canopy greenness observations through digital repeat photography by the PhenoCam network. We compare a multiple linear regression model, a no-memory-effect LSTM model and a full-memory-effect LSTM model to predict the whole seasonal greenness trajectory and the corresponding phenological transition dates across 50 sites and 317 site years during 2009–2018, covering deciduous broadleaf forests, evergreen needleleaf forests and grasslands. Results show that the deep learning model outperforms the multiple linear regression model, and the full-memory-effect LSTM model performs better than the no-memory-effect model for all three plant function types (median R2 of 0.878, 0.957 and 0.955 for broadleaf forests, evergreen needleleaf forests and grasslands). We also find that the full-memory-effect LSTM model is capable of predicting the seasonal dynamic variations of canopy greenness and reproducing trends in shifting phenological transition dates. We also performed a sensitivity analysis of the full-memory-effect LSTM model to assess its plausibility, revealing its coherence with established knowledge of vegetation phenology sensitivity to meteorological conditions, particularly changes in temperature. Our study highlights that (1) multi-variate meteorological memory effects play a crucial role in vegetation phenology, and (2) deep learning opens up new avenues for improving the representation of vegetation phenological processes in land surface models via a hybrid modelling approach.

Geology↗

Agent-based simulations of shared automated vehicle operations: reflecting travel-party size, season and day-of-week demand variations

Here, this paper explores the effects of day of week and season of year demand variations for shared rides, along with realistic travel party sizes, on shared autonomous vehicle (SAV) services across the Austin, Texas region. Using the agent-based POLARIS program, synthetic person-trips that reflect travel-party size (from one to four persons) and demand variations over days and months, as evident in the National Household Travel Survey data were simulated in each scenario over a 24 h travel day. Results show that realistic party sizes can bring considerable changes to SAV fleet performance, including up to 8.5% higher service rates (number of requests accepted within 15 min), 5 min shorter journey times (wait time + travel time), 28% higher vehicle occupancies on weekends, and roughly 4% lower empty fleet VMT. Weekend travel is most impacted by season of year, with weekday travel patterns looking more uniform (thanks to work and school trips). Various performance metrics for the Austin network, like total and empty VMT, change by up to 30% when considering realistic variations in party size and time of year. This paper underscores the value of recognizing day-to-day and month-to-month variations in travel demand, and the importance of agent-based model equations to reflect travel-party size. Such realism can help quantify SAV seat occupancies more accurately, highlighting the importance of shared mobility. However, it also creates demand and supply issues for operators that now need more information on party size to manage dynamic ride-sharing, or those that may wish to shift their fleet vehicles to other regions for special events to protect profits while offering reasonable wait times to customers throughout the year.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Spatiotemporal variations of albedo in managed agricultural landscapes: inferences to global warming impacts (GWI)

Albedo can be used to quantify ecosystem and landscape contributions to local and global climate. Such contributions are conventionally expressed as radiative forcing (RF) and global warming impact (GWI). We contextualize our results within landscape carbon production and storage to highlight the importance of changes in albedo for landscape GWI from multiple causes, including net ecosystem production (NEP) and greenhouse gas (GHG) emissions. Objective To examine the spatiotemporal changes in albedo (Δα) in contrasting managed landscapes through calculations of albedo-induced RF (RF Δα ) and GWI (GWI Δα ) under different climatic conditions. Methods We selected five contrasting landscapes within the Kalamazoo River watershed in southern Michigan USA as proof of concept. The daily MCD43A3 MODIS (V006) product was used to analyze the inter- and intra-annual variations of growing season albedo. In addition, the variations of RF Δα and GWI Δα were computed based on landscape composition and climate. Results The RF Δα (-5.6 W m -2 ) and GWI Δα (-1.3 CO 2eq ha -1 year -1 ) were high in forest-dominated landscapes, indicating cooling effects and CO 2eq mitigation impacts similar to crops. The CO 2eq mitigation of cropland-dominated landscapes was on average 52% stronger than forest-dominated landscapes. In the landscape with the highest proportion of forest, under dry and wet conditions CO 2eq mitigation was reduced by up to 24% and ~ 30%, respectively; in one cropland-dominated landscape wet conditions reduced CO 2eq mitigation by 23%. Conclusions Findings demonstrate that quantifying spatiotemporal changes in albedo in managed landscapes and under different climatic conditions is essential to understand how landscape modification affects RF Δα and GWI Δα and thereby contributes to ecosystem-level GWI.

54 ENVIRONMENTAL SCIENCES↗

Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

Abstract Camelina [ Camelina sativa (L.) Crantz] is an oilseed crop in the Brassicaceae family that is currently being developed as a source of bioenergy and healthy fatty acids. To facilitate modern breeding efforts through marker‐assisted selection and biotechnology, we evaluated genetic variation among a worldwide collection of 222 camelina accessions. We performed whole‐genome resequencing to obtain single nucleotide polymorphism (SNP) markers and to analyze genomic diversity. We also conducted phenotypic field evaluations in two consecutive seasons for variations in key agronomic traits related to oilseed production such as seed size, oil content (OC), fatty acid composition, and flowering time. We determined the population structure of the camelina accessions using 161,301 SNPs. Further, we identified quantitative trait loci (QTL) and candidate genes controlling the above field‐evaluated traits by genome‐wide association studies (GWAS) complemented with linkage mapping using a recombinant inbred line (RIL) population. Characterization of the natural variation at the genome and phenotypic levels provides valuable resources to camelina genetic studies and crop improvement. The QTL and candidate genes should assist in breeding of advanced camelina varieties that can be integrated into the cropping systems for the production of high yield of oils of desired fatty acid composition.

59 BASIC BIOLOGICAL SCIENCES↗

Large seasonal fluctuations of groundwater radioiodine speciation and concentrations in a riparian wetland in South Carolina

Recent studies evaluating multiple years of groundwater radioiodine ( 129 I) concentration in a riparian wetland located in South Carolina, USA identified strong seasonal concentration fluctuations, such that summer concentrations were much greater than winter concentrations. These fluctuations were observed only in the wetlands but not in the upland portion of the plume and only with 129 I, and not with other contaminants of anthropogenic origin: nitrate/nitrite, strontium-90, technecium-99, tritium, or uranium. This unexplained observation was hypothesized to be the result of strongly coupled processes involving hydrology, water temperature, microbiology, and chemistry. To test this hypothesis, an extensive historical groundwater database was evaluated, and additional measurements of total iodine and iodine speciation were made from recently collected samples. During the summer, the water table decreased by as much as 0.7 m, surface water temperature increased by as much as 15 °C, and total iodine concentrations were consistently greater (up to 680%) than the following winter months. Most of the additional iodine observed in the summer could be attributed to proportional gains in organo-iodine, and not iodide or iodate. Furthermore, 129 I concentrations were observed to be two-orders-of-magnitude greater at the bottom of the upland aquifer than at the top. A coupled hydrological and biogeochemical conceptual model is proposed to tie these observations together. First, as the surface water temperature increased during the summer, microbial activity was enhanced, which in turn stimulated the formation of mobile organo-I. Hydrological processes were also likely involved in the observed iodine seasonal changes: (1) as the water table decreased in summer, the remaining upland water entering the wetland was comprised of a greater proportion of water containing elevated iodine concentrations from the low depths, and (2) water flow paths in summer changed such that the wells intercepted more of the contaminant plume and less of the diluting rainwater (due to evapotranspiration) and streamwater (as the lower levels promote a predominantly recharging system). Furthermore, these results underscore the importance of coupled processes influencing contaminant concentrations, and the need to assess seasonal contaminant variations to optimize long-term monitoring programs of wetlands.

54 ENVIRONMENTAL SCIENCES↗

Fungal and bacterial growth variation due to drought and nitrogen addition experimental treatments. Loma Ridge Experimental Project. 2010-2012

Terrestrial ecosystem models assume that microbial communities respond instantaneously, or are immediately resilient, to environmental change. Here we tested this assumption by quantifying the resilience of a leaf litter community to changes in precipitation or nitrogen availability. By manipulating composition within a global change experiment, we decoupled the legacies of abiotic parameters versus that of the microbial community itself. After one rainy season, more variation in fungal composition could be explained by the original microbial inoculum than the litterbag environment (18% versus 5.5% of total variation). This compositional legacy persisted for 3 years, when 6% of the variability in fungal composition was still explained by the microbial origin. In contrast, bacterial composition was generally more resilient than fungal composition. Microbial functioning (measured as decomposition rate) was not immediately resilient to the global change manipulations; decomposition depended on both the contemporary environment and rainfall the year prior. Finally, using metagenomic sequencing, we showed that changes in precipitation, but not nitrogen availability, altered the potential for bacterial carbohydrate degradation, suggesting why the functional consequences of the two experiments may have differed. Predictions of how terrestrial ecosystem processes respond to environmental change may thus be improved by considering the legacies of microbial communities. This data package includes ten csv files (five data files and their corresponding data dictionaries) and one file-level metadata excel file. Data files contains information about which plots were exposed to treatments related to drought and nitrogen, information about litter bags reciprocal transplants manipulation for water input and nitrogen, detail information about water addition, precipitation records, and litter variables collected. Data dictionary files include detail explanation for each column in the data files. The file-level metadata file describes each file mentioned above. All the analyses were done using the R software.

54 ENVIRONMENTAL SCIENCES↗

The Seismic Signature of a High-Energy Density Physics Laboratory and Its Potential for Measuring Time-Dependent Velocity Structure

The Z Machine at Sandia National Laboratories is a pulsed power facility for high-energy density physics experiments that can shock materials to extreme temperatures and pressures through a focused energy release of up to ~ 25 MJ in < 100 nanoseconds. It has been in operation for more than two decades and conducts up to ~ 100 experiments, or “shots,” per year. Based on a set of 74 known shot times from 2018, we determined that Z Machine shots produce detectable ~ 3–17 Hz ground motion 12 km away at the Albuquerque Seismological Laboratory, New Mexico (ANMO), borehole seismograph, with peak signal at ~ 7 Hz. The known shot waveforms were used to create a three-component template, leading to the detection of 2339 Z Machine shots since 1998 through single-station cross-correlation. Local seismic magnitude estimates range from local magnitude (M L ) —2 to —1.3 and indicate that only a small fraction of the shot energy is transmitted by seismic phases observable at 12 km distance. The most recent major facility renovation, which was intended to decrease mechanical dissipation, is associated with an abrupt decrease in observed seismic amplitudes at ANMO despite stable maximum shot energy. The highly repetitive impulsive sources are well suited to coda-wave interferometry to investigate time-dependent velocity structures. Relative velocity variations (dv/v) show an annual cycle with amplitude of ~ 0.2%. Local minima are observed in the late spring, and dv/v increases through the summer monsoon rainfall, possibly reflecting patchy saturation as rainfall infiltrates near the eastern edge of the Albuquerque basin. Importantly, the cumulative results demonstrate that forensic seismology can provide insight into long-term operation of facilities such as pulsed-power laboratories, and that their recurring signals may be valuable for studies of time-dependent structure

54 ENVIRONMENTAL SCIENCES↗

An evaluation of meteorological data prediction over Washington, D.C.: Comparison of DCNet observations and NAM model outputs

This study presents an example of how outputs of operational and readily-available mesoscale numerical models can be adapted to initialize dispersion calculations within the urban surface roughness layer. Three years of urban meteorological observations from central Washington, DC, are compared against forecast outputs of the North American Mesoscale (NAM) model. NAM wind speed predictions underestimate the observations in light winds and overestimate the measurements in high winds. Average wind directions are consistent. However, an adjustment of the predicted direction of the plume by –20° is needed. The uncertainty associated with this adjustment is large in light NAM wind speed with no evident variation by season. The values of the standard deviation of the wind direction, σθ derived from NAM model outputs underestimate the observations by a small amount (about –1.5 to –2.5°). The results presented here indicate that mesoscale numerical model outputs can provide information adequate for dispersion calculations. However, levels of uncertainty associated with implementation of the suggested procedures increase with decreasing wind speed, causing considerable uncertainty in the implementation of adjustments as low wind speed conditions are approached. Results and recommendations reported here should not be extended to other numerical models or other cities without further testing.

54 ENVIRONMENTAL SCIENCES↗

MFRED, 10 second interval real and reactive power for groups of 390 US apartments of varying size and vintage

Abstract Building electricity is a major component of global energy use and its environmental impacts. Detailed data on residential electricity use have many interrelated research applications, from energy conservation to non-intrusive load monitoring, energy storage, integration of renewables, and electric vs. fossil-based heating. The dataset presented here, Multifamily Residential Electricity Dataset (MFRED), contains the electricity use of 390 apartments, ranging from studios to four-bedroom units. All apartments are located in the Northeastern United States (IECC-climate-zone 4 A), but differ in their heating/cooling system and construction year (early to late 20 th century). To adhere to privacy guidelines, data were averaged across 15 apartments each, based on annual electricity use. MFRED includes real and reactive power, at 10-second resolution, for January to December 2019 (246 million data points). The annual average real power per apartment is 343 W (3.27 W/m 2 of floor area), with strong variation between seasons and apartment size. Considering its large number of apartments, high time resolution, real and reactive power, and 12-month duration, MFRED is currently unique for the multifamily-sector.

97 MATHEMATICS AND COMPUTING↗

Diel, seasonal, and inter-annual variation in carbon dioxide effluxes from lakes and reservoirs

Abstract Accounting for temporal changes in carbon dioxide (CO 2 ) effluxes from freshwaters remains a challenge for global and regional carbon budgets. Here, we synthesize 171 site-months of flux measurements of CO 2 based on the eddy covariance method from 13 lakes and reservoirs in the Northern Hemisphere, and quantify dynamics at multiple temporal scales. We found pronounced sub-annual variability in CO 2 flux at all sites. By accounting for diel variation, only 11% of site-months were net daily sinks of CO 2 . Annual CO 2 emissions had an average of 25% (range 3%–58%) interannual variation. Similar to studies on streams, nighttime emissions regularly exceeded daytime emissions. Biophysical regulations of CO 2 flux variability were delineated through mutual information analysis. Sample analysis of CO 2 fluxes indicate the importance of continuous measurements. Better characterization of short- and long-term variability is necessary to understand and improve detection of temporal changes of CO 2 fluxes in response to natural and anthropogenic drivers. Our results indicate that existing global lake carbon budgets relying primarily on daytime measurements yield underestimates of net emissions.

54 ENVIRONMENTAL SCIENCES↗

Nanoscale simulation of the thylakoid membrane response to extreme temperatures

Abstract The thylakoid membrane is in a temperature‐sensitive equilibrium that shifts repeatedly during the life cycle in response to ambient temperature or solar irradiance. Plants respond to seasonal temperature variation by changing their thylakoid lipid composition, while a more rapid mechanism for short‐term heat exposure is required. The emission of the small organic molecule isoprene has been postulated as one such possible rapid mechanism. The protective mechanism of isoprene is unknown, but some plants emit isoprene at high temperature. We investigate the dynamics and structure for lipids within a thylakoid membrane across temperatures and varied isoprene content using classical molecular dynamics simulations. The results are compared with experimental findings for temperature‐dependent changes in the lipid composition and shape of thylakoids. The surface area, volume, and flexibility of the membrane, as well as the lipid diffusion, increase with temperature, while the membrane thickness decreases. Saturated thylakoid 34:3 glycolipids derived from eukaryotic synthesis pathways exhibit altered dynamics relative to lipids from prokaryotic synthesis paths, which could explain the upregulation of specific lipid synthesis pathways at different temperatures. Increasing isoprene concentration was not observed to have a significant thermoprotective effect on the thylakoid membranes, and that isoprene readily permeated the membrane models tested.

59 BASIC BIOLOGICAL SCIENCES↗

Improving probabilistic infectious disease forecasting through coherence

With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system’s geographical hierarchy.

59 BASIC BIOLOGICAL SCIENCES↗

Twinac: initiation of a community-driven accelerator digital twin framework

We present the initiation of a community-driven framework for the integration of accelerator digital twins into control systems: Twinac. Few facilities have fully integrated accelerator digital twins like at Cornell’s CHESS. Many facilities have active research to employ surrogate models to aid in operational decisions like at Argonne’s ALS, MSU’s FRIB, SLAC’s LCLS-II, and Fermilab’s FAST/IOTA, PIP-II, and main complex. To lower the barrier to entry for all accelerator facilities to build and benefit from a digital twin of their own accelerators, we propose the following software framework. Twinac will provide the capability to compose one’s own digital twin using reusable components engineered at other facilities. With this model in place, Twinac will also support tools for (1) predictive maintenance systems; (2) discovery of correlated but uncontrolled environmental factors, like seasonal temperature variations causing performance changes on power supplies, magnets, etc.; and (3) prototyping and updating sophisticated optimization and controls algorithms. The Twinac framework will enable sharing and simplified deployment of modeled components and control algorithms at all facilities. With an inter-facility team to build and support the Twinac framework, it will be easy to publish and try out the latest advancements at one’s own facility.

Miceli, Tia [Fermilab]↗

Properties and Controlling Processes of Aerosol and Cloud Condensation Nuclei in Marine Boundary Layer Over Eastern North Atlantic (Final Report)

Remote marine low cloud systems have large spatial and temporal coverages. Because of their relatively low optical thickness and background aerosol concentrations, marine low clouds are particularly susceptible to perturbations in aerosols associated with anthropogenic emissions. Recent studies show that a large fraction of the global aerosol indirect forcing can be attributed to changes in marine low clouds, despite their relatively long distance from most anthropogenic sources. Currently, there remain large uncertainties in the magnitude of the global aerosol indirect radiative forcing. One major contribution to this large uncertainty derives from poor understanding of the aerosols under natural conditions, the perturbation by anthropogenic emissions, and the processes that drive them. In this project, we took advantage of the comprehensive, multi-dimensional characterization of meteorological parameters, trace gases, aerosol, cloud, and drizzle fields during the Aerosol and Cloud Experiments in Eastern North Atlantic (ACE-ENA) and the long-term measurements at the Atmospheric Radiation Measurement (ARM) Eastern North Atlantic (ENA) site on Graciosa Island. By synergistically combining in situ measurements, remote sensing retrievals, and model simulations, we quantified aerosol properties in the ENA, their vertical profiles, and variations with season, synoptic state, and airmass. We investigated key aerosol processes, including entrainment of free troposphere aerosol into marine boundary layer, new particle formation, growth of Aitken mode particles, and the influences of these processes on the cloud condensation nuclei (CCN) population in marine boundary layer. The representation of key aerosol processes in the Energy Exascale Earth System Model (E3SM) was evaluated using the observations. This project has led to 26 publications, which are listed at the end of this report.

54 ENVIRONMENTAL SCIENCES↗

Assessing Geospatial and Seasonal Influences on Energy and Cost-Efficiency of Drayage Trucks

The electrification of heavy-duty vehicles is a critical pathway toward improved energy efficiency in the freight sector. The current battery electric truck technology poses several challenges to commercial vehicle operations, such as limited driving range, sensitivity to climate conditions, and long recharging times. Estimating the energy consumption of heavy-duty electric trucks is crucial to assessing the feasibility of fleet electrification and its impact on the electric grid. This article focuses on developing a model-based simulation approach to predict and analyze the energy consumption of electric trucks by considering the impact of weather and geographical conditions on vehicle road load and auxiliary components power consumption, as well as the impact these factors have on driving range. Specifically, drayage trucks employed in logistics around maritime ports are used as a case study, with consideration of seasonal climate variations and geographical characteristics at different locations. The article includes results for three major container ports within the United States, providing region-specific insights into the energy requirements and driving range of the electric drayage trucks in these regions, which will inform decision-makers in integrating electric trucks into the existing drayage operations and plan investments for electric grid development.

Sujan, Vivek [ORNL] (ORCID:0000000269882342)↗

Twinac: A Universal Framework for Virtual Accelerator Controls

We propose a universal framework for a system of virtual accelerator controls (Twinac), a standard toolkit for research institutions to design, maintain, and use a real-time, end-to-end "digital twin" of their particle accelerator facility. This virtual counterpart will mirror any physical accelerator to provide (1) predictive maintenance; (2) surveillance of hidden environmental factors, such as seasonal temperature variations, which could impact performance of power supplies, magnets, and other instruments; and (3) a capability to model novel ways to operate the accelerator without risking equipment damage. Twinac is envisioned as accelerator facility agnostic, allowing institutions to share and reuse myriad simulation approaches (analytics-based, A.I.-driven, or combinations of the like) across facilities. The Twinac system lays the groundwork for a collaborative network of institutions to maintain and update this shared virtual accelerator technology.

Miceli, Tia M. [Fermilab] (ORCID:0000000265577789)↗