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NASA NTRS2000

The Northeast Monsoon's Impact on Mixing, Phytoplankton Biomass and Nutrient Cycling in the Arabian Sea

In the northern Arabian Sea, atmospheric conditions during the Northeast (winter) Monsoon lead to deep convective mixing. Due to the proximity of the permanent pyncnocline to the sea surface, this mixing does not penetrate below 125 m. However, a strong nitracline is also present and the deep convection results in significant nitrate flux into the surface waters. This leads to nitrate concentrations over the upper 100 m that exceed 4 micrometers toward the end of the Monsoon. During the 1994/1995 US JGOFS/Arabian Sea expedition, the mean areal gross primary production over two successive Northeast Monsoons was determined to be 1.35gC/sq m/d. Thus, despite the deep penetrative convection, high rates of primary productivity were maintained. An interdisciplinary model was developed to elucidate the biogeochemical processes involved in supporting the elevated productivity. This model consists of a 1-D mixed-layer model coupled to a set of equations that tracked phytoplankton growth and the concentration of the two major nutrients (nitrate and ammonium). Zooplankton grazing was parameterized by rate constant determined by shipboard experiments. Model boundary conditions consist of meteorological time-series measured from the surface buoy that was part of the ONR Arabian Sea Experiment's central mooring. Our numerical experiments show that elevated surface evaporation, and the associated salinization of the mixed layer, strongly contributes to the frequency and penetration depth of the observed convective mixing. Cooler surface temperatures, increased nitrate entrainment, reduced water column stratification, and lower near-surface chlorophyll a concentrations all result from this enhanced mixing. The model also captured a dependence on regenerated nitrogen observed in nutrient uptake experiments performed during the Northeast Monsoon. Our numerical experiments also indicate that variability in mean pycnocline depth causes up to a 25% reduction in areal chlorophyll a concentration. We hypothesize that such shifts in pycnocline depth may contribute to the interannual variations in primary production and surface chlorophyll a concentration that have been previously observed in this region.

Wiggert, J. D.↗

NASA NTRS1978

Mapping of chlorophyll a distributions in coastal zones

It is pointed out that chlorophyll a is an important environmental parameter for monitoring water quality, nutrient loads, and pollution effects in coastal zones. High chlorophyll a concentrations occur in areas which have high nutrient inflows from sources such as sewage treatment plants and industrial wastes. Low chlorophyll a concentrations may be due to the addition of toxic substances from industrial wastes or other sources. Remote sensing provides an opportunity to assess distributions of water quality parameters, such as chlorophyll a. A description is presented of the chlorophyll a analysis and a quantitative mapping of the James River, Virginia. An approach considered by Johnson (1977) was used in the analysis. An application of the multiple regression analysis technique to a data set collected over the New York Bight, an environmentally different area of the coastal zone, is also discussed.

Johnson, R. W.↗

NASA NTRS2005

Seasonal And Regional Differentiation Of Bio-Optical Properties Within The North Polar Atlantic

Using data collected during spring and summer seasons in the north polar Atlantic we examined the variability of the spectral absorption, a(lambda), and backscattering, b(sub b)(lambda), coefficients of surface waters and its relation to phytoplankton pigment concentration and composition. For a given chlorophyll a concentration (TChla), the concentrations of photosynthetic carotenoids (PSC), photoprotective carotenoids (PPC), and total accessory pigments (AP) were consistently lower in spring than in summer. The chlorophyll-specific absorption coefficients of phytoplankton and total particulate matter were also lower in spring, which can be partly attributed to lower proportions of PPC, PSC, and AP in spring. The spring values of the green-to-blue band ratio of the absorption coefficient were higher than the summer ratios. The blue-to-green ratios of backscattering coefficient were also higher in spring. The higher b(sub b) values and lower blue-to-green b(sub b) ratios in summer were likely associated with higher concentrations of detrital particles in summer compared to spring. Because the product of the green-to-blue absorption ratio and the blue-to-green backscattering ratio is a proxy for the blue-to-green ratio of remote-sensing reflectance, we conclude that the performance of ocean color band-ratio algorithms for estimating pigments in the north polar Atlantic is significantly affected by seasonal shifts in the relationships between absorption and TChla as well as between backscattering and TChla. Intriguingly, however, fairly good estimate of the particulate beam attenuation coefficient at 660 nm (potential measure of total particulate matter or particulate organic carbon concentration) can be obtained by applying a single blue-to-green band-ratio algorithm for both spring and summer seasons.

Stramska, Malgorzata↗

NASA NTRS1973

The use of near-infrared photography for biodegradable pollution monitoring of tidal rivers

On October 2, 1972, a pattern of chlorophyll a containing phytoplankton (algae) was detected from 3-km altitude in a series of near-infrared photographs of the Potomac River 'Salt Wedge Area.' Densitometer traces over the film images, related to in situ measurements of chlorophyll a concentrations that varied from 4 to more than 3000 micrograms/liter, revealed a phytoplankton 'bloom' threshold in the near infrared between the concentration of 34 and 51 micrograms/liter. The photography also revealed bottom features through two meters of water and made it possible to integrate chlorophyll a concentrations over a 16 sq km area to demonstrate this remote sensing technique for biodegradable pollution monitoring.

Bressette, W. E.↗

NASA NTRS1982

Analysis of ocean color scanner data from the Superflux III Experiment

The scanner collected data on October 15, 20, and 22, 1980. Single-channel gray-scale data products generated 5 minutes after the scanner were collected and showed details of the Chesapeake plume structure, suggesting that this quick-look capability could have potential use for experiments in real time. The Chesapeake Bay plume extended offshore about 5 nautical miles on October 15, and 7 nautical miles on October 20. Using the October 15 1980, data, a correlation coefficient of r = 0.889 was obtained between chlorophyll 'A' and the ratio of band 7 (664-684 nanometers) to band 9 (746-766 nanometers). This ratio was then used to calculate the average surface chlorophyll 'A' concentration of the water flowing out of the Chesapeak Bay. A ratio from the Ocean Color Scanner bands was created to simulate the ratio that the Multichannel Ocean Color Sensor uses to calculate chlorophyll A concentrations. Using the October 15, 1980, data set, this ratio has a correlation coefficient of r = -0.739 with the log of the chlorophyll 'A' and the ratio of band 2 minus band 4 to band 2 plus band 4 of the Ocean Color Scanner. No correlation is found between the Ocean Color Scanner data and total suspended solid measurements made on October 15, 1980.

Ohlhorst, C. W.↗

NASA NTRSDate not supplied

Calibration of Landsat 8 Aquatic Reflectance Band Data to Spatial Variations in Chlorophyll a, Suspended Sediment, N, and P in Coastal Estuaries of Southern Louisiana

Nutrient enrichment of coastal estuaries is a proven causal agent of harmful algal blooms, fish kills, and hypoxic zones. To enable regional mapping in coastal estuaries of southern Louisiana of Chlorophyll a, suspended sediment, N, and P concentrations, monthly water sample data collected at over 30 stations along a 129 km transect in the Barataria Basin by Turner et al. (2019) were correlated with Landsat 8 aquatic reflectance (ar) band 3 and 4 image data (2013-2016). Results showed significant non-linear correlations (R2 > 0.2) of Landsat ar band 4 values with measured concentrations of Chlorophyll a, total suspended sediment, N, and P. The strongest correlations were revealed between Landsat ar band 4 reflectances and total P concentrations, periodically at R2 values > 0.6. Landsat ar band images revealed detailed variations in total N and P concentrations that were consistent with the measured nutrient declines associated with dilution of freshwater as sampling locations progressed toward more coastal saline waters. Regional map images of ar band 4 in 2019 and 2020 confirmed that recent openings of Bonnet Carre Spillway could have resulted in damage to oyster beds in the brackish Gulf waters near Lake Borgne and the Mississippi River Delta, possibly due to reduced salinity levels and enhanced sediment deposition.

Calibration↗

DOE OSTI2024

Monitoring water quality in the lower Kansas River using remote sensing

Abstract We demonstrate how to combine remote sensing data from satellite imagery (Sentinel‐2) with in situ water quality gauging (USGS Super Gages and the Gybe hyperspectral radiometer) to create spatially dense maps of water quality parameters (chlorophyll‐a concentration, turbidity, and nitrate plus nitrite concentration) along the lower Kansas River. The water quality maps are created using locally tuned models of the target water quality parameters, and this study describes the steps used to design, calibrate, and validate the empirical correlations. Water quality parameters such as chlorophyll‐a concentration are correlated with well‐studied absorption and scattering features in the visible spectrum (roughly 400–700 nm). Nutrients (such as nitrate plus nitrite concentration) lack strong absorption features in the visible spectrum, and in those cases we describe a novel surrogate data modeling approach that identifies overlapping water parcels between the in situ gauging and the remote sensing imagery. Measurements from the overlapping water parcels yield excellent correlations () for the target water quality parameters for limited windows of time (or limited sections of river reaches). Examples are provided illustrating how the water quality maps can be used to track river inputs from ungauged sources (such as creeks), or reveal the mixing patterns at the confluences.

Tufillaro, Nicholas↗

NASA NTRSDate not supplied

The Application of Remote Sensing and Machine Learning to Improve Early Warning Systems for Harmful Algal Events in the Highland Lake Chain, TX

Beginning in 2019, harmful algal events have caused canine deaths in both Lady Bird Lake and Lake Travis located near Austin, Texas. These two reservoirs are part of the larger Highland Lakes chain, managed by the City of Austin Department of Watershed Protection (COA DWP) and the Lower Colorado River Authority (LCRA), which fulfill municipal, commercial, and agricultural water demands. Given the recent increase in favorable environmental conditions for algal events in central Texas, NASA DEVELOP partnered with LCRA and COA DWP to improve monitoring and early detection of algal events, utilizing satellite remote sensing and machine learning. Spatially and temporally varied chlorophyll a concentrations, cyanobacteria detections, turbidity, and water surface temperature products are used as environmental proxies. Landsat 8 Operational Land Imager (OLI) and the Sentinel-2 MultiSpectral Instrument (MSI) data were used to provide a combined revisit time of up to ~3 days and < 30 m per pixel products. Chlorophyll a concentrations were estimated using a pre-trained Mixture Density Network, and cyanobacteria detection was accomplished using the Broad Wavelength Algae Index, which can differentiate algal blooms from algal proliferations (mats). In situ data were used to validate remotely sensed measurements and quantify uncertainties. Preliminary results show a good fit between the modeled output and in situ observations, suggesting that remote sensing data can be used to retrieve biogeochemical properties and/or inherent optical properties (IOPs) of water columns in these inland human-made lakes. Uncertainties were introduced from the sensitivity to atmospheric correction, inherent mismatch between satellite and sampling data, and a relatively lower signal-to-noise ratio over water. The resulting products enable near real-time monitoring of environmental proxies relevant to algal event presence in the Highland Lakes chain, and will ultimately support water management, decision making, and risk communication.

Shuyu Chang↗

NASA NTRS2021

Tonlé Sap Food Security & Agriculture III: Evaluating Changes in Ecosystem Vitality and Freshwater Health in the Tonlé Sap Basin using Remotely Sensed Data

Tonlé Sap Lake, located in Cambodia, Southeast Asia, is one of the most productive inland fisheries in the world. With the unique reverse flow hydrology of the Tonlé Sap River, this freshwater system contains rich biodiversity and provides critical freshwater resources for the local community. Overfishing, stronger seasonality, drought, dam construction, forest fires, and untreated industrial domestic sewage threaten the ecosystem vitality and economic success of Tonlé Sap. In collaboration with Conservation International and the Cambodian Ministry of Water Resources and Meteorology’s Tonlé Sap Authority, we calibrated and finalized remotely-sensed proxies for sub-indicators of the Freshwater Health Index (FHI). We used NASA Earth observation data from Moderate Resolution Imaging Spectroradiometer (MODIS), and the Gravity Recovery and Climate Experiment (GRACE). These datasets were used in RS proxies and a Soil and Water Assessment Tool (SWAT) model that previous teams developed for sub-indicators of FHI. They included landcover, bank modification, and water quality metrics. It was determined that the ground water storage in Tonlé Sap Lake exhibited a slight declining trend over from April 1st, 2002 to February 3rd, 2017. To calculate chlorophyll-a concentration in the Tonlé Sap Lake, we used Copernicus Global Land Service mission data which provided a Trophic State Index of the lake. Between January 1st, 2000 and December 31st, 2020, the lake and surrounding region within the study area boundary displayed a slight decrease in vegetation density and consistently high chlorophyll-a concentrations. The SWAT model calculated nitrogen and phosphorus content measured in outlet points of the lake. We demonstrated that remotely sensed data is valuable for providing additional information for the FHI, but is not fully capable of replacing its in situ counterpart. We also concluded the water quantity is on a slowly declining trend within the basin.

Joey Lindsay↗

NASA NTRS2004

From Surface Chlorophyll a to Phytoplankton Community Composition in Oceanic Waters

The objective of the present study is to examine the potential of using the near-surface total chlorophyll a concentration (C(sub surf)), as it can be derived from ocean color observation, to infer the column-integrated and the vertical distribution of the phytoplanktonic biomass, both in a quantitative way and in a qualitative way (z.e., in terms of community structure). Within this context, a large HPLC (High Performance Liquid Chromatography) pigment database has been analyzed. It includes 2419 vertical pigment profiles, all sampled in Case-1 waters with various trophic states. The relationshps between C(sub surf) and the total chlorophyll alpha vertical distribution, as previously derived by Morel and Berthon, are fully confirmed, as the present results coincide with the previous ones. This agreement allows to go further, namely to examine the possibility of extracting relationships between C(sub surf) and the vertical composition of the algal assemblages. Thanks to the detailed pigment composition available from HPLC measurements, the contribution of three size classes (micro-, nano-, and pico-phytoplankton) to the local total chlorophyll a concentration can be assessed. Corroborating previous findings (e.g., large species dominate in eutrophc environments, whereas tiny phytoplankton prevail in oligotrophic zones), the results lead to a statistically based parameterization. The predictive skill of this parameterization is successfully tested on a separate data set. With such a tool, the vertical total chlorophyll a profiles associated with each size class can be inferred from the sole knowledge of C(sub surf). By combining this tool with satellite ocean color data, it becomes conceivable to quantify on a global scale the phytoplankton biomass associated with each of the three size classes.

Uitz, Julia↗

NASA NTRS1975

Multiwavelength LIDAR for remote sensing of chlorophyll A in algae and phytoplankton

A theoretical and experimental analysis of laser induced fluorescence for remote detection of chlorophyll A in living algae and phytoplankton is presented. The fluorescent properties of various species of algae representative of the different color groups are described. Laboratory measurements of fluorescent scattering cross sections is discussed and quantitive data presented. A scattering matrix model is developed to demonstrate the essential requirement of multiwavelength laser excitation in order to make accurate quantitative measurements of chlorophyll A concentration when more than one color group of algae is present in the water. A practical airborne laser fluorosensor design is considered and analysis of field data discussed. Successful operation of the Langley ALOPE (airborne LIDAR oceanographic probing experiment) system is described and field measurements presented. Accurate knowledge of alpha, the optical attenuation coefficient of the water, is shown to be essential for quantitative analysis of chlorophyll A concentration. The feasibility of remotely measuring alpha by laser radar is discussed.

Mumola, P. B.↗

NASA NTRS1979

Remote sensing of phytoplankton density and diversity in Narragansett Bay using an airborne fluorosensor

An aircraft-borne remote system is presented that utilizes narrow-band light from multiple dye lasers to excite selected algae photopigments and then measures the resultant flourescence emitted from chlorophyll a at 685 nm. Tests were conducted with both pure and mixed cultures of marine algae from a series of field tests taken from piers and bridges of Narragansett Bay, and a prototype remote fluorosensor was flown over the Bay during the 1978 winter-spring diatom bloom. Remote fluorescence obtained at hover points over sea-truth stations showed correlations with in situ fluorescence, total chlorophyll a, and cell count. It was concluded that the ratio of remote fluorescence to direct chlorophyll a concentration was less variable than expected, and the distribution of total chlorophyll a between two major photoplankton color groups showed three distinct areas, within the Bay, of green and golden-brown species.

Farmer, F. H.↗

NASA NTRS1989

Acid mist and ozone effects on the leaf chemistry of two western conifer species

The effects of ozone and acid-mist exposures on the leaf chemistry of Jeffrey pine and giant sequoia seedlings grown in filtered-air greenhouses were investigated. Acid-mist treatments (pH 4.1, 3.4, 2.7, or 2.0) were administered for 3 h, and ozone exposures (0, 0.10, and 0.20 microliter/liter), which followed acid-mist treatments, for 4 h, each for three days a week for six to nine weeks. It was found that seedlings were more susceptible to acid-mist and acid mist/ozone combinations, than to ozone alone. Acid mist treatment resulted in higher levels of nitrogen and sulfur (both present in acid mist) as well as Na. Leaves of giant sequoia exhibited increased K and decreased Mn, while Jeffrey pine showed increases in Fe and Mn. In sequoia leaves, concentrations of Ca, Mg, and Ba decreased. Acid treatment also reduced chlorophyll b concentrations in both conifer species. Extensive changes induced by acid mist are consistent with earlier observations of changes in spectral reflectance of conifer seedlings observed after three weeks of fumigation.

Westman, Walter E.↗

NASA NTRS1981

Analysis of ALOPE data from Superflux

Remote sensing data collected with the airborne lidar oceanographic probing experiment (ALOPE) laser fluorosensor during the Superflux 1 and Superflux 2 experiments were analyzed using two techniques. A qualitative technique which requires no supplementary data provided a near-real-time estimate of relative abundance of the golden-brown and green phytoplankton color groups. Contour plots developed for the later mission are used to demonstrate the utility of this technique. A quantitative technique which requires supplementary data to define the attenuation coefficient provides chlorophyll a concentration by color group. The sum of the golden-brown and green chlorophyll a data yields total chlorophyll a values which may be compared with in situ data. As expected, the golden-brown population was dominant in the Chesapeake Bay and the Bay plume whereas the green population was dominant in shelf waters.

Jarrett, O., Jr.↗

NASA NTRS1982

Analysis of high altitude remotely sensed data collected in the Nantucket Shoals experiment 4-15 May, 1981

High altitude ocean color scanner ratios of band 2 (456 to 476 nanometers) to band 4 (539 to 559 nanometers) and band 1 (418 to 438 nanometers) to band 3 (498 to 518 nanometers) had high correlation coefficient values (-0.928 and 0.891 respectively) with seven boat sampled chlorophyll a measurements. The range of chlorophyll a concentrations was small (1.7-2.58 mg/cu m.). Each ratio was used to calculate chlorophyll a values for the center pixel of each scan line on flight lines 5 and 6. The two ratios produced dissimilar chlorophyll a trends. Due to the high noise level in the scanner data, no reliable synoptic chlorophyll a map could be generated with either ratio algorithm.

Ohlhorst, C. W.↗

NASA NTRS1995

Light response of phytoplankton in the South Atlantic Ocean: Interpretation of observations and application to remote sensing

A simplified, nonspectral derivation of a classical theory in plant physiology is presented and used to derive an absorption-based primary productivity algorithm. Field observations from a meridional transect (4 deg N to 42 deg S) in the Atlantic Ocean are then described and interpreted in this theoretical context. The observations include photosynthesis-irradiance curve parameters (alpha and P(sub max)), chlorophyll a and phaeopigment concentration, and estimated phytoplankton absorption coefficients at wavelength = 440 nm (a(sub ph)(440)). Observations near the top (50% I(sub 0)) and bottom (6% I(sub 0)) of the euphotic zone are contrasted. At both light levels, alpha, P(sub max), a(sub ph)(440), and pigment concentration varied similarly along the transect: values were highest at the equator and at the southern end of the transect and lowest in the central South Atlantic. It is concluded that this pattern was related to increased nutrient availability due to equatorial upwelling in the north, and increased wind mixing in the south. At the 50% light level, alpha increased relative to a(sub ph) at the southern end of the transect. This result appears to reflect a large-scale meridional (southward) increase in the average quantum efficiency of the photosynthetic units of the phytoplankton. A correlation analysis of the data reveals that at the 50% light level, variations in P(sub max) were more closely related to a(sub ph)(440) than chlorophyll concentration and that phytoplankton absorption explains 90% of the variability in P(sub max). In theory, this shows that the ratio of the average quantum efficiency of the photosynthetic units of the phytoplankton to the product of their average absorption cross section and turnover time is relatively constant. This result is used to simplify the absorption-based primary productivity algorithm derived previously. The feasibility of using this model to estimate production rate from satellite ocean color observations is discussed. It is concluded that an absorption-based algorithm should provide more accurate production rate estimates than one based upon chlorophyll (pigment) concentration.

Hood, Raleigh R.↗

NASA NTRS1993

Ocean color and atmospheric dimethyl sulfide: On their mesoscale variability

The mesoscale variability of dimethyl sulfide (DMS) and ocean color is explored to determine the feasibility of a predictive relationship. During NASA's Global Tropospheric Experiment/Chemical Instrumentation Test and Evaluation (GTE/CITE 3), simultaneous shipboard and aircraft studies were carried out in the North Atlantic, followed by aircraft studies in the South Atlantic. Surface concentrations of chlorophyll alpha were measured with an airborne spectroradiometer, the Ocean Data Acquisition System (ODAS), with simultaneous determinations of tropospheric DMS. Shipboard measurements of DMS in air and water as well as in situ chlorophyll alpha were taken in the North Atlantic. No relation was observed between shipboard aquatic DMS and chlorophyll alpha or primary productivity. Higher levels of aqueous DMS were not always reflected by atmospheric DMS, although shipboard and aircraft measurements of atmospheric DMS agreed very well. A significant relationship between atmospheric DMS and ocean color was seen once at low altitudes in both the North and South Atlantic only under clean air conditions. Atmospheric DMS levels during the North Atlantic experiment were probably lowered by the presence of mostly polluted air masses in the study area and were, overall, probably not representative of the in situ sea-to-air flux of DMS. Changes in concentration of aircraft-sensed chlorophyllous pigments were not reflected by atmospheric DMS. If a predictive algorithm is to be found, phytoplankton blooms should probably be the first place to study an ocean color-DMS relationship.

Matrai, Patricia A.↗

NASA NTRS1993

Relationships between pigment composition variation and reflectance for plant species from a coastal savannah in California

Advances in imaging spectroscopy have indicated that remotely sensed reflectance measurements of the plant canopy may be used to identify and qualify some classes of canopy biochemicals; however, the manner in which differences in biochemical compositions translate into differences is not well understood. Most frequently, multiple linear regression routines have been used to correlate narrow band reflectance values with measured biochemical concentrations. Although some success has been achieved with such methods for given data sets, the bands selected by multiple regression are not consistent between data sets, nor is it always clear what physical or biological basis underlies the correlation. To examine the relationship between biochemical concentration and leaf reflectance signal we chose to focus on the visible spectrum where the primary biochemical absorbances are due to photosynthetic pigments. Pigments provide a range of absorbance features, occur over a range of concentrations in natural samples, and are ecophysiologically important. Concentrations of chlorophyll, for example, have been strongly correlated to foliar nitrogen levels within a species and to photosynthetic capacity across many species. In addition pigments effectively absorb most of the photosynthetically active radiation between 400-700 nm, a spectral region for which silicon detectors have good signal/noise characteristics. Our strategy has been to sample a variety of naturally occurring species to measure leaf reflectance and pigment compositions. We hope to extend our understanding of pigment reflectance effects to interpret small overlapping absorbances of other biochemicals in the infrared region. For this reason, selected samples were also tested to determine total nitrogen, crude protein, cellulose, and lignin levels. Leaf reflectance spectra measured with AVIRIS bandwidths and wavelengths were compared between species and within species and for differences between seasons, for changes in the the shape of the spectra. We attempt to statistically correlate these shape changes with differences in pigment compositions. In parallel with our comparisons of pigment composition and leaf reflectance, we have modified the PROSPECT leaf reflectance model to test the contributions of pigments or pigment group concentrations. PROSPECT considers a leaf as a multi-layer dielectric plane with an uneven surface. Jacquemoud adapted the basic analysis of Allen for surface effects, a leaf thickness factor, and the absorption of water and chlorophyll (actually all pigments) and the plant matrix. Our modifications to PROSPECT in the forward direction include breaking out the pigment concentration parameter into separate components for chlorophyll a and b and a number of xanthophylls and carotenes, and introducing a shift and convolution function to model the spread and shift from their in vitro measurements to their in vivo state. Further, we have considered how the matrix elements (i.e., all biochemicals and structural effects not modeled explicity) vary with species.

Ustin, Susan L.↗