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At least 217 records · Page 12

Ab-initio nucleon-nucleon correlations and their impact on high energy 16 O+ 16 O collisions

Investigating nucleon-nucleon correlations inherent to the strong nuclear force is one of the core goals in nuclear physics research. We showcase the unique opportunities offered by collisions of 16 O nuclei at high-energy facilities to reveal detailed many-body properties of the nuclear ground state. We interface existing knowledge about the geometry of 16 O coming from ab-initio calculations of nuclear structure with transport simulations of high-energy 16 O+ 16 O collisions. Bulk observables in these processes, such as the elliptic flow or the fluctuations of the mean transverse momentum, are found to depend significantly on the input nuclear model and to be sensitive to realistic clustering and short-range repulsive correlations, effectively opening a new avenue to probe these features experimentally. This finding demonstrates collisions of oxygen nuclei as a tool to elucidate initial conditions of small collision systems while fostering connections with effective field theories of nuclei rooted in quantum chromodynamics (QCD).

Zhang, Chunjian [Fudan University, Shanghai (China↗

Probing the Coherence of Metal Absorbers toward Background Quasar Pairs

Abstract We investigate the spatial coherence of metal absorption lines in the circumgalactic medium using 4115 quasar pairs from Sloan Digital Sky Survey DR16. We identify 184 Mg ii (15 with dual detections) and 50 C iv (11 with dual detections) absorber pairs. The fraction of pairs with fractional equivalent width difference δW r ≤ 0.5 declines with projected separation: for Mg ii , it drops from ∼52% at 0–25 kpc to ∼7% at 100–200 kpc, while for C iv , it decreases from ∼100% to ∼21% over 0–200 kpc. In every separation bin, C iv absorbers with δW r ≤ 0.5 maintain a higher fraction than Mg ii absorbers. Similar results are obtained when the nondetections are treated as 2 σ W r upper limits in a survival analysis. The transverse autocorrelation function shows strong Mg ii clustering within 0–25 kpc, whereas the C iv excess remains relatively flat out to ∼100 kpc. These findings suggest that high-ionization C iv gas retains coherence over larger transverse scales than low-ionization Mg ii gas, in agreement with previous lensed quasar and high-resolution studies.

Li, Jing [Guangxi University] (ORCID:0009000148751↗

Learning nuclear cross sections across the chart of nuclides with graph neural networks

We explore the use of deep learning techniques to learn how nuclear cross sections change as we add or remove protons and neutrons. As a proof of principle, we focus on the neutron-induced reactions in the fast energy regime. Our approach follows a two-stage learning framework. First, we apply representation learning to encode cross section data into a latent space using either variational autoencoders (VAEs) or implicit neural representations (INRs). Then, we train graph neural networks (GNNs) on the resulting embeddings to predict missing values across the nuclear chart by leveraging the topological structure of neighboring isotopes. We demonstrate accurate cross section predictions within a 9 × 9 block of missing nuclei. We also find that the optimal GNN training strategy depends on the type of latent representation used, with VAE embeddings performing best under end-to-end optimization in the original space, while INR embeddings achieve better results when the GNN is trained only in the latent space. Furthermore, using clustering algorithms, we map groups of latent vectors into regions of the nuclear chart and show that VAEs and INRs can discover some of the neutron magic numbers. These findings suggest that deep-learning models based on the representation encoding of cross sections combined with graph neural networks hold significant potential in augmenting nuclear theory models, e.g., by providing reliable estimates of covariances of cross sections, including cross-material covariances.

Machine learning↗

Optical galaxy cluster mock catalogs with realistic projection effects: Validations with the SDSS clusters

Galaxy clusters identified in optical imaging surveys suffer from projection effects: Physically unassociated galaxies along a cluster’s line of sight can be counted as its members and boost the observed richness (the number of cluster members). To model the impact of projection on cluster cosmology analyses, we apply a halo occupation distribution model to 𝑁-body simulations to simulate the red galaxies contributing to cluster members, and we use the number of galaxies in a cylinder along the line of sight (counts in cylinders) to model the impact of projection on cluster richness. We compare three projection models: uniform, quadratic, and Gaussian, and we convert between them by matching their effective cylinder volumes. We validate our mock catalogs using SDSS redMaPPer clusters’ data vectors, including counts vs richness, stacked lensing signal, spectroscopic redshift distribution of member galaxies, and richness remeasured on a redshift grid. We find the former two are insensitive to the projection model, while the latter two favor a quadratic projection model with a width of ≈180 ℎ −1 Mpc (equivalent to the volume of a uniform model with a width of 100 ℎ −1 Mpc and a Gaussian model with a width of 110 ℎ −1 Mpc, or a Gaussian redshift error of 0.04). Furthermore, our framework provides an efficient and flexible way to model optical cluster data vectors, paving the way for a simulation-based joint analysis for clusters, galaxies, and shear.

79 ASTRONOMY AND ASTROPHYSICS↗

Electronic effects in radiation-induced collision cascades in nickel

The accurate treatment of electronic effects in multi-million-atom simulations of radiation-induced collision cascades is crucial for reliable predictions of primary radiation damage. In this work, we explore the fidelity of a recently developed two-temperature molecular dynamics model implementing an electron density-dependent coupling of electronic and atomic subsystems for cascade simulations in nickel. We show that the parameter-free model realistically captures the instantaneous energy losses during all stages of the highly nonequilibrium cascade process. Our simulations predict two distinct coupling regimes, corresponding to the rapid energy losses through electronic stopping in the early stages of the cascade and to the slow equilibration through the electron-phonon coupling mechanism in the later stages, without the use of separate models or coupling terms. The intermediate stage of the cascade dynamics displays a complex energy transfer between the subsystems, which cannot be interpreted by comparison to either electronic stopping or electron-phonon coupling theories. We therefore compare the predicted atomic mixing, which is sensitive to the energy losses during the intermediate cascade stage, with experimental ion beam mixing measurements. We find good agreement with the experiments, validating the coupling model for the intermediate stage of the cascade. Predictions of final defect numbers and cluster sizes are found in line with the results from conventional electronic stopping-based methods, while significantly reducing the theoretical uncertainty in the outcomes of conventional models stemming from arbitrary choices of thresholds for different coupling terms. Our results represent a notable improvement in cascade damage predictions in nickel, providing validation of the electron density-dependent coupling model for radiation damage simulations in general. The results lead us to propose an interpretation of the electronic energy losses in the intermediate regime of velocities, where we find an effectively nonlinear dissipation.

Crystal defects↗

Theory of the photomolecular effect

It is well-known that water in liquid and vapor phases exhibits weak visible-light absorption. Recent experiments, however, show that at the liquid-air interface, absorption drastically increases, accelerating evaporation beyond thermal limits by 2–5 times. Strikingly, evaporation peaks at green wavelengths, despite no corresponding absorptance peak. The underlying mechanism of this observation, termed the photomolecular effect, remains puzzling, particularly as water molecules do not exhibit resonance peaks in the visible spectrum. Here, we present a theoretical model explaining the effect. We show that surface-bound water clusters undergo non-resonant photon-driven evaporation, with green light being particularly effective. Crucially, we do not expect green light to couple more strongly than other wavelengths to the molecules at the surface, rather the energy of green light is more effectively used to vaporize water. Our model accounts for why the evaporation peak does not align with absorptance and provides a quantum mechanical explanation of how a single photon can vaporize an entire molecular cluster. This model challenges conventional views on water-light interactions, revealing a fundamentally non-thermal evaporation mechanism. Furthermore, our findings have implications for water purification, energy-efficient drying, and climate modeling, opening new pathways for optimizing evaporation-based technologies.

Interfacial evaporation↗

Joint Analysis of Small-scale Galaxy Clustering and Galaxy–Galaxy Lensing from BOSS Galaxies

We present a joint analysis of galaxy clustering and galaxy–galaxy lensing measurements from BOSS galaxies using a simulation-based emulation method combined with a halo occupation distribution model. Our emulators are constructed with the Aemulus ν simulations, a suite of wνCDM N-body simulations with massive neutrinos as independent particle species. We combine small-scale analysis of clustering from 0.1 to 60.2 h −1 Mpc and lensing from 1.7 to 60.2 h −1 Mpc to perform cosmological constraints. We split the BOSS galaxies into three redshift bins to measure their clustering and employ galaxies from Dark Energy Camera Legacy Survey and Hyper Suprime-Cam as source galaxies to measure lensing separately. We find that the addition of lensing significantly improves the constraining power on $S_8 = σ_8(Ω_m/0.3)^{0.5}$, with a weak improvement for fσ 8 . Our results of fσ 8 indicate tensions of around 1σ−4σ below the results of the cosmic microwave background observations of Planck. For S 8 , our results are also lower than Planck, and the tension can be mitigated when considering possible systematics in lensing measurement. As a by-product, our analysis prefers a nonzero neutrino mass but without strong significance, with the constraining power dominated by the clustering. Given the accuracy and precision of our model and the observational data, it is anticipated that larger and higher-quality spectroscopic data sets will improve the constraints on this fundamental property in the near future.

Gao, Wenhao [Shanghai Jiao Tong University (China)↗

Cosmological constraints from the Planck cluster catalogue with DES shear profiles and Chandra observations

We present cosmological constraints from the Planck PSZ2 cosmological cluster sample, using weak-lensing shear profiles from Dark Energy Survey (DES) data and X-ray observations from the Chandra telescope for the mass calibration. We compute hydrostatic mass estimates for all clusters in the PSZ2 sample with a scaling relation between their Sunyaev-Zeldovich signal and X-ray derived hydrostatic mass, calibrated with the Chandra data. We introduce a method to correct these masses with a hydrostatic mass bias using shear profiles from wide-field galaxy surveys. We simultaneously fit the number counts of the PSZ2 sample and the mass calibration with the DES data, finding $Ω_\text{m}=0.312^{+0.018}_{-0.024}$, $σ_8=0.777\pm 0.024$, $S_8\equiv σ_8 \sqrt{Ω_\text{m} / 0.3}=0.791^{+0.023}_{-0.021}$, and $(1-b)=0.844^{+0.055}_{-0.062}$ for our baseline analysis when combined with BAO data. When considering a hydrostatic mass bias evolving with mass, we find $Ω_\text{m}=0.353^{+0.025}_{-0.031}$, $σ_8=0.751\pm 0.023$, and $S_8=0.814^{+0.019}_{-0.020}$. We verify the robustness of our results by exploring a variety of analysis settings, with a particular focus on the definition of the halo centre used for the extraction of shear profiles. We compare our results with a number of other analyses, in particular two recent analyses of cluster samples obtained from SPT and eROSITA data that share the same mass calibration data set. We find that our results are in overall agreement with most late-time probes, in very mild tension with CMB results (1.6$σ$), and in significant tension with results from eROSITA clusters (2.9$σ$). We confirm that our mass calibration is consistent with the eROSITA analysis by comparing masses for clusters present in both Planck and eROSITA samples, eliminating it as a potential cause of tension.

Aymerich, G. [Orsay, IAS; AIM, Saclay] (ORCID:0009↗

Plant genotype and rhizobia strain combinations strongly influence the transcriptome under heavy metal stress conditions in Medicago truncatula

Heavy metals such as cadmium (Cd) and mercury (Hg) pose significant threats to plant health and food safety as they are absorbed from the environment. Legumes are generally considered sensitive to heavy metals but possess standing genetic variation for accumulation and tolerance to toxic ions. We conducted a transcriptomic analysis on hydroponically and soil grown Medicago truncatula plants to investigate gene expression responses to Cd and Hg exposure in roots, leaves, and nodules. By using plant genotypes with varying metal tolerance or accumulation levels, we observed distinct clustering of gene ontologies, indicating tissue-specific, genotype-specific, and metal-specific gene expression patterns. Considering the symbiotic relationship between legumes and nitrogen-fixing bacteria, we further examined plant phenotypes and transcriptomes of plant genotypes with contrasting Hg accumulation levels and inoculated them with high or low Hg-tolerant Sinorhizobium medicae strains that have presence-absence variation for a mercury reductase (Mer) operon. Host plants inoculated with the Hg-tolerant rhizobia strain possessing a Mer operon exhibited less reduction in nodule number and plant biomass. A smaller reduction in iron (Fe) distribution in nodules after Hg stress was measured using X-ray Fluorescence (XRF) imaging. Dual transcriptome (host plant and bacteria) analysis of nodules revealed a remarkable decrease in the number of differentially expressed genes (DEGs) and clustering of gene ontologies in plants inoculated with the Hg-tolerant rhizobia strain, including symbiosis related genes. This finding suggests that the Hg-tolerant rhizobia strain has the potential to mitigate Hg stress in host plants. Furthermore, we observed genotype by-genotype interactions between the high Hg accumulating plant genotype and the Hg-tolerant rhizobia strain. These findings provide insights into enhancing plant resilience in contaminated environments through optimizing legume-rhizobia interactions for heavy metal tolerance.

59 BASIC BIOLOGICAL SCIENCES↗

Thermodynamics and collisionality in firehose-susceptible high- β plasmas

We study the evolution of collisionless plasmas that, due to their macroscopic evolution, are susceptible to the firehose instability, using both analytic theory and hybrid-kinetic particle-in-cell simulations. We establish that, depending on the relative magnitude of the plasma β, the characteristic time scale of macroscopic evolution and the ion-Larmor frequency, the saturation of the firehose instability in high-β plasmas can result in three qualitatively distinct thermodynamic (and electromagnetic) states. By contrast with the previously identified ‘ultra-high-beta’ and ‘Alfvén-inhibiting’ states, the newly identified ‘Alfvén-enabling’ state, which is realised when the macroscopic evolution time τ exceeds the ion-Larmor frequency by a β-dependent critical parameter, can support linear Alfvén waves and Alfvénic turbulence because the magnetic tension associated with the plasma’s macroscopic magnetic field is never completely negated by anisotropic pressure forces. We characterise these states in detail, including their saturated magnetic-energy spectra. The effective collision operator associated with the firehose fluctuations is also described; we find it to be well approximated in the Alfvén-enabling state by a simple quasi-linear pitch-angle scattering operator. The box-averaged collision frequency is ν eff ∼ β/τ, in agreement with previous results, but certain subpopulations of particles scatter at a much larger (or smaller) rate depending on their velocity in the direction parallel to the magnetic field. Our findings are essential for understanding low-collisionality astrophysical plasmas including the solar wind, the intracluster medium of galaxy clusters and black hole accretion flows. We show that all three of these plasmas are in the Alfvén-enabling regime of firehose saturation and discuss the implications of this result.

astrophysical plasmas↗

Quantifying and Zoning Urban Heat Island Effects Using Unsupervised Machine Learning

This work explores the Urban Heat Island (UHI) effects in Maricopa County, Arizona, employing a simulation-based approach that combines large-scale building energy modeling with advanced spatial analysis. Utilizing the Automatic Building Energy Modeling (AutoBEM) software suite, we simulated the energy consumption for approximately 1.35 million buildings based on the Model America version 1.0 (MAv1) dataset. Our methodology incorporated spatial analysis at multiple scales, including individual buildings, clusters of zones determined by K-means clustering, and geographical level evaluation based on Zip codes. The results revealed significant variations in energy consumption and heat emissions across different building types and urban zones. High-emission hotspots identified through clustering pointed to areas most contributing to the UHI effects. Zip code-based area analysis further contextualized these findings, offering an urban context-based perspective on emission distribution and informing potential urban energy policies for mitigating UHI effects.

Chowdhury, Shovan [ORNL]↗

Full calibration of the tomographic redshift distribution from the HSC PDR3 Shape Catalog with DESI

The calibration of tomographic redshift distributionsis essential for cosmological analysis of weak lensing data.In this work, we calibrate all four tomographic bins of the Hyper Suprime Camera (HSC) weak lensing catalog with the Dark Energy Spectroscopic Instrument (DESI) Data Release 1 and 2 using the clustering redshifts technique. We include z > 1.2 redshift sources such as emission line galaxies (ELG) and quasars (QSO) sources in our calibration, which were not available in the previous HSC calibration (Rau et al. (2022), Mon. Not. Roy. Astron. Soc. 524 (2023) 5109), allowing a complete calibration of all the redshift bins. We find the first tomographic bin exhibits a small shift towards low redshifts. The second bin is in good agreement with the photometric calibration, while third and fourth bin exhibit a shift towards higher redshifts. However, these shifts are considerably smaller than the shifts obtained in the HSC Year 3 cosmic shear analyses. We evaluate the impact of galaxy bias and magnification effects from all the samples on the measurements, finding them to be small, and we propose corrections to reduce them further. Specifically, we relax the assumption of linear bias and only assume no redshift evolution of the cross-correlation coefficient, allowing us to leverage smaller clustering scales. We model the redshift distributions with splines and compare our results to previous analyses as well as to other parameterizations found in literature. For the two high-redshift tomographic bins, we find the shifts to higher redshifts with respect to the measurements performed in Rau+2022 to be Δz$_{3}$ =-0.039$^{+0.020}$$_{-0.021}$ and Δz$_{4}$ = -0.048$^{+0.012}$$_{-0.012}$.

Choppin de Janvry, J. [LBL, Berkeley; UC, Berkeley↗

High-redshift millennium and astrid galaxies in effective field theory at the field level

Effective field theory (EFT) modeling is expected to be a useful tool in the era of future higher-redshift galaxy surveys such as DESI-II and Spec-S5 due to its robust description of various large-scale structure tracers. However, large values of EFT bias parameters of higher-redshift galaxies could jeopardize the convergence of the perturbative expansion. Here, in this paper we measure the bias parameters and other EFT coefficients from samples of two types of star-forming galaxies in the state-of-the-art MilleniumTNG and astrid hydrodynamical simulations. Our measurements are based on the field-level EFT forward model that allows for precision EFT parameter measurements by virtue of cosmic variance cancellation. Specifically, we consider approximately representative samples of Lyman-break galaxies (LBGs) and Lyman-𝛼 emitters (LAEs) that are consistent with the observed (angular) clustering and number density of these galaxies at 𝑧 = 3. Reproducing the linear biases and number densities observed from existing LAE and LBG data, we find quadratic bias parameters that are roughly consistent with those predicted from the halo model coupled with a simple halo occupation distribution model. We also find nonperturbative velocity contributions (fingers of God) of a similar size for LBGs to the familiar case of luminous red galaxies. However, these contributions are quite small for LAEs despite their large satellite fraction values of up to ∼ 30%. Our results indicate that the effective momentum reach 𝑘 max at 𝑧 = 3 for LAEs (LBGs) will be in the range 0.3−0.6⁢ℎ Mpc −1 (0.2−0.8⁢ℎ Mpc −1 ), suggesting that EFT will perform well for high-redshift galaxy clustering. This work provides the first step toward obtaining realistic simulation-based priors on EFT parameters for LAEs and LBGs.

Sullivan, James M. [Massachusetts Inst. of Technol↗

Coupled cluster and dislocation dynamics modeling of microstructure evolution in irradiated materials

We develop here a coupled cluster and dislocation dynamics framework to study the microstructure evolution of irradiated materials. The framework not only accounts for the three dimensional diffusion of radiation-generated clusters, but also their interaction with dislocation networks and the resultant climb motion of discrete dislocations within finite crystals. The framework is solved with a superposition solution scheme, and is applied to investigate the evolution of the irradiation-induced dislocation loops in zirconium (Zr), considering the effects of various bias factors including the diffusion anisotropy difference (DAD) of interstitials and interstitial clusters, the dislocation bias of defects to discrete dislocation segments, and the production bias of defects from the radiation cascade. We find that the DAD is the most critical factor influencing the kinetics of the loop evolution in Zr, while the recombination/interaction of mobile defects can induce a strong spatial dependence of the loop evolution together with the DAD. Here, the method is also adopted to study the evolution of interstitial $\langle$a$\rangle$ and vacancy $\langle$c$\rangle$ dislocation loop ensembles consistent with the microstructure observed during irradiation-induced growth of Zr. Our findings not only reveal the spatial dependence of the size and ellipticity of the dislocation loops, but also suggest a limit on the anisotropy factor of interstitials to reproduce the co-growth of $\langle$a$\rangle$ and $\langle$c$\rangle$ loops in zirconium, in good agreement with experimental observations and other simulation results.

Bias factors↗

Impact of solvation on the electronic resonances in uracil

Interactions of low-energy electrons with the DNA and RNA nucleobases are known to form metastable states, known as electronic resonances. In this work, we study electron attachment to solvated uracil, an RNA nucleobase, using the orbital stabilization method at the Equation of Motion-Coupled Cluster for Electron Affinities with Singles and Doubles (EOM-EA-CCSD) level of theory with the Effective Fragment Potential (EFP) solvation method. We benchmarked the approach using multireference methods, as well as by comparing EFP and full quantum calculations. The impact of solvation on the first one particle (1p) shape resonance, formed by electron attachment to the π* LUMO orbital, as well as the first two particle one hole (2p1h) resonance, formed by electron attachment to neutral uracil's π–π* excited state, was investigated. We used molecular dynamics simulations for solvent configurations and applied charge stabilization technique-based biased sampling to procure configurations adequate to cover the entire range of the electron attachment energy distribution. The electron attachment energy in solution is found to be distributed over a wide range of energies, between 4.6 eV to 6.8 eV for the 2p1h resonance, and between −0.1 eV to 2 eV for the 1p resonance. The solvent effects were similar for the two resonances, indicating that the exact electron density of the state is not as important as the solvent configurations. Multireference calculations extended the findings showing that solvation effects are similar for the lowest four resonances, further indicating that the specific solute electron density is not as important, but rather the water configurations play the most important role in solvation effects. Lastly, by comparing bulk solvation to clusters of uracil with a few water molecules around it, we find that the impact of microsolvation is very different from that of bulk solvation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Redshift evolution and covariances for joint lensing and clustering studies with DESI Y1

ABSTRACT Galaxy–galaxy lensing (GGL) and clustering measurements from the Dark Energy Spectroscopic Instrument Year 1 (DESI Y1) data set promise to yield unprecedented combined-probe tests of cosmology and the galaxy–halo connection. In such analyses, it is essential to identify and characterize all relevant statistical and systematic errors. We forecast the covariances of DESI Y1 GGL + clustering measurements and the systematic bias due to redshift evolution in the lens samples. Focusing on the projected clustering and GGL correlations, we compute a Gaussian analytical covariance, using a suite of N-body and lognormal simulations to characterize the effect of the survey footprint. Using the DESI one percent survey data, we measure the evolution of galaxy bias parameters for the DESI luminous red galaxy (LRG) and bright galaxy survey (BGS) samples. We find mild evolution in the LRGs in $0.4 < z < 0.8$, subdominant to the expected statistical errors. For BGS, we find less evolution for brighter absolute magnitude cuts, at the cost of reduced sample size. We find that for a redshift bin width $\Delta z = 0.1$, evolution effects on DESI Y1 GGL is negligible across all scales, all fiducial selection cuts, all fiducial redshift bins. Galaxy clustering is more sensitive to evolution due to the bias squared scaling. Nevertheless the redshift evolution effect is insignificant for clustering above the 1-halo scale of $0.1h^{-1}$ Mpc. For studies that wish to reliably access smaller scales, additional treatment of redshift evolution is likely needed. This study serves as a reference for GGL and clustering studies using the DESI Y1 sample.

79 ASTRONOMY AND ASTROPHYSICS↗

Probing degradation at solid-state battery interfaces using machine-learning interatomic potential

Solid-state batteries featuring fast ion-conducting solid electrolytes are promising next-generation energy storage technologies, yet challenges remain for practical deployment due to electro-chemo-mechanical instabilities at solid-solid interfaces. These interfaces, which include homogeneous/internal interfaces such as grain boundaries (GBs) and heterogeneous/external interfaces between solid-electrolyte and electrode materials, can impede Li-ion transport, deteriorate performance, and eventually lead to cell failure. Here, in this study, we leverage large-scale molecular simulations, enabled by validated machine-learning interatomic potentials, to directly probe the onset of interfacial degradation at the garnet Li 7 La 3 Zr 2 O 12 (LLZO) solid-electrolyte/LiCoO 2 (LCO) cathode interface. By surveying different interfacial geometries and compositions, it is found that Li-deficient interfaces can lead to severe interfacial disordering with cation mixing and Co interdiffusion from LCO into LLZO. By contrast, Li-sufficient interfaces are less disordered, although elemental segregation with local ordering is observed. As a consequence of Co interdiffusion, Co-rich regions are formed at the GBs of LLZO due to cation segregation and trapping effects. This behavior is independent of the GB tilting axis, degree of disorder at the GBs, and Co concentration, which implies Co clustering at GBs is a general phenomenon in polycrystalline LLZO and can dictate its overall transport and mechanical properties. Our findings elucidate the underlying fundamental mechanisms that give rise to experimentally observed physicochemical properties and provide guidelines for interface design that can mitigate interfacial degradation and improve cycling performance.

25 ENERGY STORAGE↗

Gene and genome duplications have contrasting impacts on biosynthetic and flower developmental pathways in California poppy

Benzylisoquinoline alkaloids (BIAs) represent a vast group of specialized plant metabolites with diverse pharmaceutical applications, synthesized by a variety of gene families. Among the multiple plant lineages that produce BIAs, the most notable is the poppy family (Papaveraceae), with California poppy (Eschscholzia californica) emerging as a model organism. Here, we report a haplotype-resolved genome assembly, in combination with a high-density expression atlas, for California poppy. Genome analyses reveal recent diversification of BIA biosynthesis genes in poppy through localized duplications. Furthermore, we demonstrate that the degree of phylogenetic relatedness among paralogs within BIA biosynthesis-associated gene families correlates with similarities in gene expression. In contrast, gene families involved in carotenoid biosynthesis, which contributes to the intense orange petal pigmentation, are not phylogenetically clustered, and floral developmental regulators exhibit a high degree of retention of gene duplicates associated with ancient polyploidy events. These findings illustrate alternative roles for gene and genome duplications as drivers of trait evolution. Given the position of California poppy in the angiosperm phylogeny, the high-quality genomic resources generated for this work constitute a valuable resource for comparative genomic and transcriptomic analyses for poppies and flowering plants more generally.

Rössner, Le-Han [Justus-Liebig University, Giessen↗