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At least 217 records · Page 12

Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss

RNA viruses display high mutation rates and their populations replicate as dynamic and complex mutant distributions, termed viral quasispecies. Repeated genetic bottlenecks, which experimentally are carried out through serial plaque-to-plaque transfers of the virus, lead to fitness decrease (measured here as diminished capacity to produce infectious progeny). Here we report an analysis of fitness evolution of several low fitness foot-and-mouth disease virus clones subjected to 50 plaque-to-plaque transfers. Unexpectedly, fitness decrease, rather than being continuous and monotonic, displayed a fluctuating pattern, which was influenced by both the virus and the state of the host cell as shown by effects of recent cell passage history. The amplitude of the fluctuations increased as fitness decreased, resulting in a remarkable resistance of virus to extinction. Whereas the frequency distribution of fitness in control (independent) experiments follows a log-normal distribution, the probability of fitness values in the evolving bottlenecked populations fitted a Weibull distribution. We suggest that multiple functions of viral genomic RNA and its encoded proteins, subjected to high mutational pressure, interact with cellular components to produce this nontrivial, fluctuating pattern.

Serial Passage↗

New anemometer has fast response, measures dynamic pressure directly

A simple anemometer having a fast response to high frequency wind fluctuations by direct measurement of two drag-force components in orthogonal planes is described. It may be used to determine wind profiles to extensive heights and would be helpful in takeoff and landing of light planes.

Lynch, J. W.↗

Externally blown flap dynamic loads

Some of the principal results obtained in three series of measurements of fluctuating surface pressures induced on externally blown flaps by jet impingment are presented. Large- and small-scale models and hot- and cold-flow tests are considered. The discussion sets forth scaling parameters and consistent features of the root-mean-square values and spectra of the loading. Implications of these results with regard to sonic fatigue are indicated.

Lansing, D. L.↗

A case and statistical study of transient magnetic field events at geosynchronous orbit and their solar wind origin

We present a statisical survey of Prognoz 10 solar wind observations at the times of transient (step function and impulsive) variations in the dayside magnetospheric magnetic field strength measured by the GOES 5 and 6 geosynchronous satellites. The results indicate that 51% of the magnetospheric events can be associated with corresponding variations in the solar wind dynamic pressure. A further 17% of the events can be associated with fluctuations in the interplanetary magnetic field orientation in the sense previously associated with foreshock pressure pulses. We find no tendency for impulsive events at dayside geosynchronous orbit to be associated with north/south fluctuations in the interplanetary magnetic field (IMF) orientation, nor for the events to occur primarily during intervals of southward IMF. The success rate for associating transient events at dayside geosynchronous orbit with solar wind features decreases as Prognoz 10 moves farther from the Earth-Sun line. The observations indicate that variations in the solar wind dynamic pressure and foreshock pressure pulses associated with variations in the IMF cone angle are the predominant causes of large-amplitude transient events observed at dayside geosynchronous orbit.

Borodkova, N. L.↗

Dust in Jupiter's magnetosphere. I - Physical processes. II - Origin of the ring. III - Time variations. IV - Effect on magnetospheric electrons and ions

The physical processes acting on charged microscopic dust grains in the Jovian atmosphere involve electromagnetic forces which dominate dust particle dynamics and diffusion across field lines resulting from random charge fluctuations of the dust grains. A model of the Jovian ring hypothesizes that the 'visible' ring particles are produced by erosive collisions between an assumed population of kilometer-sized parent bodies and submicron-sized magnetospheric dust particles. Fluctuations in the ring topology and intensity are determined over various time scales, showing that the ring is a quasipermanent and quasistable characteristic of the Jovian system. Finally, the interaction of the Jovian energetic belt electrons and the Jovian plasma with an ambient dust population is examined; the distribution of dust ejected from Io in the inner magnetosphere and losses of magnetospheric ions and electrons due to direct collisions with charged dust particles are calculated.

Morfill, G. E.↗

Predictability of time averages. I - Dynamical predictability of monthly means. II - The influence of the boundary forcings

The physical basis for the dynamic prediction of monthly means in weather parameters is examined in two papers. In the first paper, an attempt is made to determine the theoretical upper limit of dynamical predictability of monthly means for prescribed nonfluctuating external forcings. In the second paper, the physical mechanisms through which changes in the boundary forcings of SST, soil moisture, albedo, and snow influence atmospheric circulation are discussed. On the basis of both studies, the essential requirements for establishing the physical basis for dynamical prediction of monthly means are to show that: (1) fluctuations of monthly means are larger than can be expected due to sampling of day-to-day weather changes; (2) there are low frequency planetary scale components of circulation which remain predictable beyond the limits of synoptic scale predictability; and (3) the influences of the slowly varying boundary conditions of SST, soil moisture, snow, sea ice are large enough to produce significant and detectable changes in the monthly mean circulations. Observational and numerical evidence which support these requirements are presented.

Shukla, J.↗

Nucleation and Crystallization of Globular Proteins: What we Know and What is Missing

Recently. much progress has been made in understanding the nucleation and crystallization of globular proteins, including the formation of compositional and structural crystal defects, Insight into the interactions of (screened) protein macro-ions in solution, obtained from light scattering, small angle X-ray scattering and osmotic pressure studies. can guide the search for crystallization conditions. These studies show that the nucleation of globular proteins is governed by the same principles as that of small molecules. However, failure to account for direct and indirect (hydrodynamic) protein interactions in the solutions results in unrealistic aggregation scenarios. Microscopic studies of numerous proteins reveal that crystals grow by the attachment of growth units through the same layer-spreading mechanisms as inorganic crystals. Investigations of the growth kinetics of hen-egg-white lysozyme (HEWL) reveal non-steady behavior under steady external conditions. Long-term variations in growth rates are due to changes in step-originating dislocation groups. Fluctuations on a shorter timescale reflect the non-linear dynamics of layer growth that results from the interplay between interfacial kinetics and bulk transport. Systematic gel electrophoretic analyses suggest that most HEWL crystallization studies have been performed with material containing other proteins at percent levels. Yet, sub-percent levels of protein impurities impede growth step propagation and play a role in the formation of structural/compositional inhomogeneities. In crystal growth from highly purified HEWL solutions, however, such inhomogeneities are much weaker and form only in response to unusually large changes in growth conditions. Equally important for connecting growth conditions to crystal perfection and diffraction resolution are recent advances in structural characterization through high-resolution Bragg reflection profiling and X-ray topography.

Rosenberger, F.↗

On-Board Real-Time State and Fault Identification for Rovers

For extended autonomous operation, rovers must identify potential faults to determine whether its execution needs to be halted or not. At the same time, rovers present particular challenges for state estimation techniques: they are subject to environmental influences that affect senior readings during normal and anomalous operation, and the sensors fluctuate rapidly both because of noise and because of the dynamics of the rover's interaction with its environment. This paper presents MAKSI, an on-board method for state estimation and fault diagnosis that is particularly appropriate for rovers. The method is based on a combination of continuous state estimation, wing Kalman filters, and discrete state estimation, wing a Markov-model representation.

Washington, Richard↗

Comparing Methods for Dynamic Airspace Configuration

This paper compares airspace design solutions for dynamically reconfiguring airspace in response to nominal daily traffic volume fluctuation. Airspace designs from seven algorithmic methods and a representation of current day operations in Kansas City Center were simulated with two times today's demand traffic. A three-configuration scenario was used to represent current day operations. Algorithms used projected unimpeded flight tracks to design initial 24-hour plans to switch between three configurations at predetermined reconfiguration times. At each reconfiguration time, algorithms used updated projected flight tracks to update the subsequent planned configurations. Compared to the baseline, most airspace design methods reduced delay and increased reconfiguration complexity, with similar traffic pattern complexity results. Design updates enabled several methods to as much as half the delay from their original designs. Freeform design methods reduced delay and increased reconfiguration complexity the most.

Zelinski, Shannon↗

Comparing Methods for Dynamic Airspace Configuration

This paper compares airspace design solutions for dynamically reconfiguring airspace in response to nominal daily traffic volume fluctuation. Airspace designs from seven algorithmic methods and a representation of current day operations in Kansas City Center were simulated with two times today's demand traffic. A three-configuration scenario was used to represent current day operations. Algorithms used projected unimpeded flight tracks to design initial 24-hour plans to switch between three configurations at predetermined reconfiguration times. At each reconfiguration time, algorithms used updated projected flight tracks to update the subsequent planned configurations. Compared to the baseline, most airspace design methods reduced delay and increased reconfiguration complexity, with similar traffic pattern complexity results. Design updates enabled several methods to as much as half the delay from their original designs. Freeform design methods reduced delay and increased reconfiguration complexity the most.

Zelinski, Shannon↗

Theory of Type 3 and Type 2 Solar Radio Emissions

The main features of some current theories of type III and type II bursts are outlined. Among the most common solar radio bursts, type III bursts are produced at frequencies of 10 kHz to a few GHz when electron beams are ejected from solar active regions, entering the corona and solar wind at typical speeds of 0.1c. These beams provide energy to generate Langmuir waves via a streaming instability. In the current stochastic-growth theory, Langmuir waves grow in clumps associated with random low-frequency density fluctuations, leading to the observed spiky waves. Nonlinear wave-wave interactions then lead to secondary emission of observable radio waves near the fundamental and harmonic of the plasma frequency. Subsequent scattering processes modify the dynamic radio spectra, while back-reaction of Langmuir waves on the beam causes it to fluctuate about a state of marginal stability. Theories based on these ideas can account for the observed properties of type III bursts, including the in situ waves and the dynamic spectra of the radiation. Type 11 bursts are associated with shock waves propagating through the corona and interplanetary space and radiating from roughly 30 kHz to 1 GHz. Their basic emission mechanisms are believed to be similar to those of type III events and radiation from Earth's foreshock. However, several sub-classes of type II bursts may exist with different source regions and detailed characteristics. Theoretical models for type II bursts are briefly reviewed, focusing on a model with emission from a foreshock region upstream of the shock for which observational evidence has just been reported.

Robinson, P. A.↗

Molecular Dynamics Studies of Structure and Functions of Water-Membrane Interfaces

A large number of essential cellular processes occur at the interfaces between water and membranes. The selectivity and dynamics of these processes are largely determined by the structural and electrical properties of the water-membrane interface. We investigate these properties by the molecular dynamics method. Over the time scales of the simulations, the membrane undergoes fluctuations described by the capillary wave model. These fluctuations produce occasional thinning defects in the membrane which provide effective pathways for passive transport of ions and small molecules across the membrane. Ions moving through the membrane markedly disrupt its structure and allow for significant water penetration into the membrane interior. Selectivity of transport, with respect to ionic charge, is determined by the interfacial electrostatic potential. Many small molecules. of potential significance in catalysis, bioenergetics and pharmacology, are shown to bind to the interface. The energetics and dynamics of this process will be discussed.

Pohorille, Andrew↗

A stochastic-dynamical approach to the study of the natural variability of the climate

A method, suggested by Leith (1975), which employed stochastic-dynamic forecasts obtained from a general circulation model in such a way as to satisfy the definition of climatic noise, was used to validate assumptions accounting for the effects of external influences in estimating the climatic noise. Two assumptions were investigated: (1) that the weather fluctuations can be represented as a Markov process, and (2) that changing external conditions do not influence the atmosphere's statistical properties on short time scales. The general circulation model's simulation of the daily weather fluctuations was generated by performing integrations with prescribed climatological boundary conditions for random initial atmospheric states, with resulting dynamical forecasts providing an ensemble of simulated data for the autoregressive modeling of weather fluctuations. To estimate the climatic noise from the observational data (consisting of hourly values of sea level pressure and surface temperature at 54 U.S. stations for the month of January for the years 1949-1975) use of the short time-scale assumption is made. The simulated and observed data were found not to be consistent with either white noise or a Markov process of weather fluctuations. Good agreement was found between the results of the hypothetical testing of the simulated and the observed surface temperatures; and only partial support was found for the short time-scale assumption, i.e., for sea level pressure.

Straus, D. M.↗

Disturbance Dynamics in Transitional and Turbulent Flows

The dynamics of an ensemble of linear disturbances with a known probability distribution associated with the initial mode amplitudes are studied in boundary-layer flows through an analysis of the transport equations for the mean disturbance kinetic energy and disturbance energy dissipation rate. Effects of adverse and favorable pressure-gradients on the disturbance dynamics are also included in the analysis. Unlike the fully turbulent regime where nonlinear phase scrambling of the fluctuations affects the flow field in proximity to the wall, the laminar regime fluctuations studied here are influenced across the boundary layer by the solid boundary. In addition to the low Reynolds number, early stage transition regime, the dynamics of these disturbance fields can be related in some respects to the near-wall dynamics of the fully turbulent regime.

Grosch, C. E.↗

On the measurement of turbulent fluctuations in high-speed flows using hot wires and hot films

A hot wire has a limited life in high speed wind-tunnel flows because it is typically subjected to large dynamic loads. As a consequence hot films and modified hot wires are frequently used for turbulence measurements in such flows. However, the fluctuation sensitivities of such probes are reduced because of various factors, leading to erroneous results. This paper describes the results of tests on some sensors in both subsonic and supersonic boundary-layer flows. A simple technique to determine dynamic calibration correction factors for the sensitivities is also presented.

Acharya, M.↗

Dynamics of the quiescent solar corona

An analytical model for the quiescent inhomogeneous solar corona is developed on the basis of the hypothesis that looplike structures are the basic coronal building blocks. By assuming that quiescent loop structures observed in X-rays are in hydrostatic equilibrium, it is demonstrated that such loops must have their temperature maximum located near their apex and that substantial nonradiative energy deposition must occur along most of their length. The calculations yield a unique relation among loop temperature, pressure, and size, which fits the X-ray observations of quiescent structures well and is consistent with the initial assumption of hydrostatic equilibrium. The results suggest that the coronal loops visible in X-rays represent a relatively steady-state equilibrium of the confined plasmas and that fluctuations in such quantities as the local heating rate can lead to dynamically unstable states in which the loop plasma does not attain a temperature sufficient for X-ray emission. A parameterization of various proposed coronal heating theories is also developed within the context of the analytical model.

Rosner, R.↗

Quantification of scaling exponents and crossover phenomena in nonstationary heartbeat time series

The healthy heartbeat is traditionally thought to be regulated according to the classical principle of homeostasis whereby physiologic systems operate to reduce variability and achieve an equilibrium-like state [Physiol. Rev. 9, 399-431 (1929)]. However, recent studies [Phys. Rev. Lett. 70, 1343-1346 (1993); Fractals in Biology and Medicine (Birkhauser-Verlag, Basel, 1994), pp. 55-65] reveal that under normal conditions, beat-to-beat fluctuations in heart rate display the kind of long-range correlations typically exhibited by dynamical systems far from equilibrium [Phys. Rev. Lett. 59, 381-384 (1987)]. In contrast, heart rate time series from patients with severe congestive heart failure show a breakdown of this long-range correlation behavior. We describe a new method--detrended fluctuation analysis (DFA)--for quantifying this correlation property in non-stationary physiological time series. Application of this technique shows evidence for a crossover phenomenon associated with a change in short and long-range scaling exponents. This method may be of use in distinguishing healthy from pathologic data sets based on differences in these scaling properties.

NASA Discipline Number 14-10↗