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At least 217 records · Page 12

Stratospheric feedback from continued increases in tropospheric methane

Tropospheric concentrations of methane have increased steadily over the past ten years at an average rate of 16.5 ppbv per year, to a value in January 1988 of 1.69 ppmv. Measurements of CH sub 4 concentrations in air bubbles trapped in ice cores have shown concentrations of about 0.7 ppmv 200 years ago, with little further change for thousands of years before that. Interpolation earlier into this century suggests a concentration of about 1.1 to 1.2 ppmv in the 1940's. The only important pathway believed to be important for transfer of air from the troposphere to the stratosphere in through the tropical tropopause which is cold enough to reduce the mixing ratio of H sub 2 O in that air to about 3 ppmv. The only other major pathway for the delivery of H to the stratosphere is through the simultaneous injection of gaseous CH sub 4 in the same rising air. The formation of clouds in the stratosphere is dependent upon very low temperatures, and generally upon the amount of water vapor available. The possibility of a positive feedback exists, especially in well-oxidized methane air, that clouds are easier to form than earlier. This could mean enhancement of PSCs in both Antarctic and Arctic locations. Additional H sub 2 O in the stratosphere can also add to some of the greenhouse calculations.

Rowland, F. Sherwood↗

Spread of denitrification from 1987 Antarctic and 1988-1989 Arctic stratospheric vortices

Vertical profiles of N2O and NO(y) taken by the ER-2 outside the vortex are used to construct average vertical profiles of F(NO(y)) = NO(y)/(A-N2O), where A is the tropospheric content of N2O three years prior to the measurements. The southern hemisphere had less nitrous oxide in the range 400 less than Theta less than 470 K, by up to 25% relative to the northern hemisphere. F(NO(y)) is the ratio of NOy produced to N2O lost in a stratospheric air mass since entry from the troposphere. The profiles of F(NO(y)) have the following characteristics: (1) Relative to 1991-1992, a year without denitrification inside or outside the vortex, the northern hemisphere in 1988-1989 showed denitrification outside the vortex ranging up to 25% and averaging 17% above Theta = 425 K. (2) Relative to the northern hemisphere in 1991-1992, the southern hemisphere in 1987 showed denitrification outside the vortex ranging up to 32% and averaging 20% above Theta = 400 K. (3) Below Theta = 400 K the southern hemisphere showed enhancements of F(NO(y)) relative to the northern hemisphere in 1991-1992 ranging up to 200% at Theta = 375 K, outside the vortex. Corresponding profiles of residual water, R(H2O) = H2O - 2(1.6 - CH4), are considered and shown to be consistent with those of F(NO(y)) in the sense that they show deficits outside the Antarctic vortex, which was both dehydrated and denitrified, but not outside the 1988-1989 Arctic vortex, which was denitrified but not dehydrated. R(H2O) is the water content of stratospheric air with the contribution from methane oxidation subtracted. Comparison of F(NO(y)) and R(H2O) below 400 K outside the Antarctic vortex leads to the suggetion that dehydration in the Antarctic vortex occurs by the sedimentation of ice crystals large enough to fall out of the stratosphere, whereas denitrification occurs mainly on mixed nitric acid-water crystals which evaporate below the base of the vortex at Theta = 400 K but above the tropopause.

Tuck, A. F.↗

In-situ exsolution of bimetallic CoFe nanoparticles on (La,Sr)FeO 3 perovskite: Its effect on electrocatalytic oxidative coupling of methane

This study presents in-situ reduction of lanthanum strontium cobalt ferrite (LSCF) perovskite as an effective method for modifying its surface properties and enhancing its electrocatalytic reactivity for oxidative coupling of methane (OCM). The evolution of hetero-phases during the reduction of LSCF resulted in CoFe nanoparticles being formed at the surface. The in-situ reduced LSCF cell for OCM could be operated in either an ion pump or a fuel cell mode. High selectivity of 63% and 10.2% were reported for C 2+ hydrocarbons and C 3 H 6 , respectively. DFT calculations on LSCF and CoFe revealed that the high selectivity of C 2+ hydrocarbons on the LSCF primarily stems from the presence of CoFe nanoparticles. In-situ DRIFTS conducted under CH 4 proved that complete oxidation of CH 4 can be effectively inhibited by reducing LSCF, and control of oxygen supply is an important parameter for selective conversion of CH 4 to higher order hydrocarbon.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Boosting the Activity of Pd Single Atoms by Tuning Their Local Environment on Ceria for Methane Combustion

Abstract Supported Pd single atom catalysts (SACs) have triggered great research interest in methane combustion yet with contradicting views on their activity and stability. Here, we show that the Pd SAs can take different electronic structure and atomic geometry on ceria support, resulting in different catalytic properties. By a simple thermal pretreatment to ceria prior to Pd deposition, a unique anchoring site is created. The Pd SA, taking this site, can be activated to Pd δ + (0< δ <2) that has greatly enhanced activity for methane oxidation: T 50 lowered by up to 130 °C and almost 10 times higher turnover frequency compared to the untreated catalyst. The enhanced activity of Pd δ + site is related to its oxygen‐deficient local structure and elongated interacting distance with ceria, leading to enhanced capability in delivering reactive oxygen species and decomposing reaction intermediates. This work provides insights into designing highly efficient Pd SACs for oxidation reactions.

Yang, Weiwei↗

A novel semi-structured kinetic model of methanotroph-photoautotroph cocultures for biogas conversion

Through metabolic coupling of methane oxidation and oxygenic photosynthesis, methanotroph-photoautotroph (M-P) cocultures offer a highly promising technology platform for biogas conversion. However, there has not been any quantitative modeling of the coculture growth kinetics. This is mainly due to the inherent difficulty associated with real time characterization of the M-P cocultures and the complex interactions such as the cross-feeding mechanism within the coculture. To address this challenge, we recently developed a novel experimental-computational (E-C) protocol to accurately characterize the M-P coculture in real-time, and validated its accuracy through cell counting. Enabled by the E-C protocol, this work presents the very first kinetic model for M-P cocultures. By explicitly modeling the exchange of in situ produced O 2 /CO 2 within the M-P coculture and coupling the individual biomass growth with mass transfer between the gas and liquid phases, the semi-structured kinetic model accurately predicts the growth dynamics of the M-P coculture under a wide range of growth conditions. The proposed model is validated by a series of wet-lab experiments using Methylomicrobium buryatense 5GB1 - Arthrospira platensis as the model coculture. Although it has been speculated that there may exist other emergent metabolic interactions within the M-P coculture, in addition to the exchange of in situ produced O 2 /CO 2 , there has not been any experimental validation prior to this study. By integrating designed experiments with the semi-structured kinetic model, this study is the first to confirm the existence of the additional emergent metabolic exchanges within the coculture. Furthermore, this study further quantifies the effect of these unknown metabolic interactions on the growth of both species in the model coculture, supporting further research to identify these exchanged metabolites for metabolic engineering.

42 ENGINEERING↗

Differential structure and functional gene response to geochemistry associated with the suspended and attached shallow aquifer microbiomes from the Illinois Basin, IL

Despite the clear ecological significance of the microbiomes inhabiting groundwater and connected ecosystems, our current understanding of their habitats, functionality, and the ecological processes controlling their assembly have been limited. In this study, an efficient pipeline combining geochemistry, high-throughput Fluidigm TM functional gene amplification and sequencing was developed to analyze the suspended and attached microbial communities inhabiting five groundwater monitoring wells in the Illinois Basin, USA. The dominant taxa in the suspended and the attached microbial communities exhibited significantly different spatial and temporal changes in both alpha- and beta-diversity. Further analyses of representative functional genes affiliated with N 2 fixation (nifH), methane oxidation (pmoA), and sulfate reduction (dsrB, and aprA), suggested functional redundancy within the shallow aquifer microbiomes. While more diversified functional gene taxa were observed for the suspended microbial communities than the attached ones except for pmoA, different levels of changes over time and space were observed between these functional genes. Notably, deterministic and stochastic ecological processes shaped the assembly of microbial communities and functional gene reservoirs differently. While homogenous selection was the prevailing process controlling assembly of microbial communities, the neutral processes (e.g., dispersal limitation, drift and others) were more important for the functional genes. The results suggest complex and changing shallow aquifer microbiomes, whose functionality and assembly vary even between the spatially proximate habitats and fractions. As a result, this research underscored the importance to include all the interface components for a more holistic understanding of the biogeochemical processes in aquifer ecosystems, which is also instructive for practical applications.

54 ENVIRONMENTAL SCIENCES↗

Preface to Special Issue on Advances in Ceria Catalysis

Ceria, which acts as a “star” among the metal-oxides, has established to be one of the most promising materials for chemical transformations and energy applications owing to its redox and acid–base properties. Ceria has become a key component in three-way catalytic converters, water-gas shift reaction, CO oxidation, methane combustion, and complex organic reactions. More importantly, introducing of other metals to ceria, tailoring the shape of the ceria, and reducing structure size of ceria, usually decrease the formation energy of oxygen vacancy (Vö) and lead to unique catalytic performances.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Supported Metal Pair-Site Catalysts

Complexes with neighboring metal centers in isolated pairs and their analogues on surfaces are drawing increasing attention as catalysts. These include molecular homogeneous catalysts incorporating various ligands, enzymes, and solids that include pairs of metal atoms mounted on supports. Catalysts in this broad class are active for numerous reactions and offer unexplored opportunities to address challenging reactions, such as oxidation of methane and oxidation of water in artificial photosynthesis. The subject of supported metal pair-site catalysts is in its infancy, facing challenges in (a) precise synthesis, (b) structure determination at the atomic scale, and (c) stabilization in reactive atmospheres. In this Perspective, we summarize key characteristics of molecular and enzymatic catalysts that incorporate neighboring metal centers and build on this foundation to assess the emerging literature of metal pair-site catalysts on various supports. The supported catalysts include those synthesized by anchoring molecular dinuclear precursors to support surfaces and those synthesized by selective formation of dinuclear surface species from mononuclear surface species. Examples of metals in this class are rhodium and iridium, and examples of supports are MgO and Fe 2 O 3 . We summarize characterization of these materials by electron microscopy and spectroscopy, emphasizing atomic-resolution aberration-corrected scanning transmission electron microscopy and spectroscopies that provide atomic-scale structural information and allow characterization of functioning catalysts, especially X-ray absorption spectroscopy. Finally, we list some opportunities for research, including suggestions that might lead to structurally well-defined supported metal pair-sites with new catalytic properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Microbial Community Changes across Time and Space in a Constructed Wetland

Constructed wetlands are artificial ecosystems designed to replicate natural wetland processes. Microbial communities play a pivotal role in cycling essential elements, particularly sulfur, which is crucial for trace metal fixation and remobilization in these ecosystems. By their response to their environment, microbial communities act as biological indicators of the wetland performance. To address knowledge gaps pertinent to the changes in trace metal bioavailability in relation to microbial activities in the H-02 constructed wetland, we performed this study to investigate temporal and spatial variations in microbial communities by using molecular biology tools. Quantitative polymerase chain reaction and next generation sequencing techniques were employed to analyze archaeal and bacterial groups associated with sulfur and methane cycling. Alpha diversity indices were used to assess species richness, evenness, and dominance. Results indicated high gene abundance of Desulfuromonas (5.37 × 10 6 g.cell –1 ), methane oxidizing bacteria (6.92 × 10 6 g.cell –1 ), and methanogenic microorganisms (3.02 × 10 5 g.cell –1 ) during cool months. Warm months were marked by sulfate reducing bacteria dominance (3.31 × 10 6 g.cell –1 ), potentially due to competitive interactions and environmental conditions, higher temperatures, and lower redox potential. Spatial variability among microbial groups was insignificant, but trends in gene abundance indicated complex factors influencing these groups. Next generation sequencing data demonstrated Firmicutes as the most abundant phylum with over 50% regardless of the season or sampling location. Cool months exhibited higher alpha diversity than warm months. Overall, this study showed that seasonal changes significantly impacted the microbial communities in the H-02 constructed wetland that are associated with the sulfur cycle and eventually trace metal biogeochemistry, revealing two distinct mechanisms of the sulfur cycle between the two main seasons, whereas spatial variability effects were not conclusive.

54 ENVIRONMENTAL SCIENCES↗

Current and Future Global Lake Methane Emissions: A Process‐Based Modeling Analysis

Abstract Freshwater ecosystem contributions to the global methane budget remains the most uncertain among natural sources. With warming and accompanying carbon release from thawed permafrost and thermokarst lake expansion, the increase of methane emissions could be large. However, the impact and relative importance of various factors related to warming remain uncertain. Based on diverse lake characteristics incorporated in modeling and observational data, we calibrate and verify a lake biogeochemistry model. The model is then applied to estimate global lake methane emissions and examine the impacts of temperature increase for the first and the last decades of the 21st century under different climate scenarios. We find that current emissions are 24.0 ± 8.4 Tg CH 4 yr −1 from lakes larger than 0.1 km 2 , accounting for 11% of the global total natural source as estimated based on atmospheric inversion. Future projections under the RCP8.5 scenario suggest a 58%–86% growth in emissions from lakes. Our model sensitivity analysis indicates that additional carbon substrates from thawing permafrost may enhance methane production under warming in the Arctic. Warming enhanced methane oxidation in lake water can be an effective sink to reduce the net release from global lakes.

54 ENVIRONMENTAL SCIENCES↗

WACCM6 Projections of Polar Mesospheric Cloud Abundance Over the 21st Century

Polar mesospheric clouds (PMC), or noctilucent clouds, can be observed over high latitudes with the naked eye from the ground or from space near the summer solstice. PMC are considered a direct and sensitive indicator of climate change and have been reported to appear more frequently in recent decades. How PMC will change in the future under the influence of natural variability and anthropogenic forcing is uncertain. In this study, we utilize model output from the Whole Atmosphere Community Climate Model under several shared socioeconomic pathway (SSP) scenarios and input the water vapor, temperature, and pressure information into a 0-d PMC model to project the trend and variation of PMC over the 21st century, and their relationship to future changes of temperature, water vapor, and the solar cycle. The 0-d model calculations indicate that PMC ice water content (IWC) will increase and PMC will extend to lower latitudes under high SSP scenarios. Under these scenarios, more mesospheric water vapor leads to an increased IWC of PMC over the polar region, and colder mesopause temperature leads to more PMC over the mid-latitudes. There is a significant anti-correlation between the solar cycle and PMC IWC over the 21st century, but the anti-correlation is not always significant on the decadal scale. Finally, methane oxidation in the stratosphere and water vapor entering from the troposphere are both responsible for future changes in mesospheric water vapor and thus PMC.

54 ENVIRONMENTAL SCIENCES↗

Influence of Vertical Hydrologic Exchange Flow, Channel Flow, and Biogeochemical Kinetics on CH 4 Emissions From Rivers

Abstract CH 4 emissions from inland water are highly uncertain in the current global CH 4 budget, especially for rivers and streams due to sparse measurements and the uncertainty of measurements caused by turbulent water flow. A previous study has revealed that vertical hydrologic exchange flow (VHEF) is the main regulator of CH 4 emissions from riverbed sediments. However, to what extent the understanding obtained from the plot‐scale can be extended to the reach scale and basin scale remains unknown. To address this challenge, we developed a process‐based model to estimate CH 4 flux at the air‐water interface using the attributes available in the national hydrography data set. It calculates the annual mean flux of VHEF, CH 4 production in sediments, and CH 4 transport in the river channel in a sequential manner. Model performance is evaluated by CH 4 efflux observed at the Hanford reach of the Columbia River. We show that reach‐wise sediment hydrologic and biogeochemical conditions estimated from the national hydrography data set could serve as a good indicator of CH 4 emissions from rivers. Aerobic methane oxidation and export to the downstream are the dominant ways of total CH 4 loss for the large lowland river. The hotspots of CH 4 emissions are likely to be at the reaches with fine sediments and slow channel velocity. This study demonstrates the possibility of quantifying CH 4 emissions at the reach scale and the modeling framework has the potential to be extended to the basin scale to improve estimates of CH 4 emissions from lotic inland water.

58 GEOSCIENCES↗

On the Relationship Between Methane Production in Anaerobic Incubations of Peat Material and In Situ Methane Emissions

Anaerobic incubations of peat have been widely used to explore soil processes, but this in vitro technique raises many questions as to how well it reproduces in situ conditions. To investigate this, we conducted 60–100 days (+25 days pre‐incubation) anaerobic, temperature‐controlled incubation experiments across a temperature range of 1–26°C on samples from bog and fen habitats, at two different depths (9–19 and 25–35 cm). Here, we observed exponential increases in CO 2 and methane production with temperature in all conditions. We then compared field‐based measurements of methane emission with modeled expectations by extrapolating incubation‐determined methane production rates based on (a) soil temperature profiles, (b) the observed incubation temperature‐methane production relationship, and (c) seasonal thaw depth from each site. The resulting incubation‐extrapolated methane production agreed with measured emission rates within a factor of two at both sites and corresponded to 182 ± 54% and 59 ± 14% of the measured average yearly fluxes from the field for the bog and fen, respectively. The underestimation of fen methane fluxes may be due to the lack of living plant root‐derived dissolved organic carbon inputs in incubations, a key process in fens. Conversely, the overestimation in bogs could be attributed to methane oxidation in the field, which is absent in anaerobic incubation conditions. Nonetheless incubations predicted greenhouse gas emissions from a northern peatland within a factor of two.

Biological and medical sciences,Geosciences,Enviro↗

Methanobactin from methanotrophs: genetics, structure, function and potential applications

ABSTRACT Aerobic methane-oxidizing bacteria of the Alphaproteobacteria have been found to express a novel ribosomally synthesized post-translationally modified polypeptide (RiPP) termed methanobactin (MB). The primary function of MB in these microbes appears to be for copper uptake, but MB has been shown to have multiple capabilities, including oxidase, superoxide dismutase and hydrogen peroxide reductase activities, the ability to detoxify mercury species, as well as acting as an antimicrobial agent. Herein, we describe the diversity of known MBs as well as the genetics underlying MB biosynthesis. We further propose based on bioinformatics analyses that some methanotrophs may produce novel forms of MB that have yet to be characterized. We also discuss recent findings documenting that MBs play an important role in controlling copper availability to the broader microbial community, and as a result can strongly affect the activity of microbes that require copper for important enzymatic transformations, e.g. conversion of nitrous oxide to dinitrogen. Finally, we describe procedures for the detection/purification of MB, as well as potential medical and industrial applications of this intriguing RiPP.

54 ENVIRONMENTAL SCIENCES↗

Steam-created grain boundaries for methane C–H activation in palladium catalysts

Defects may display high reactivity because the specific arrangement of atoms differs from crystalline surfaces. We demonstrate that high-temperature steam pretreatment of palladium catalysts provides a 12-fold increase in the mass-specific reaction rate for carbon-hydrogen (C–H) activation in methane oxidation compared with conventional pretreatments. Through a combination of experimental and theoretical methods, we demonstrate that an increase in the grain boundary density through crystal twinning is achieved during the steam pretreatment and oxidation and is responsible for the increased reactivity. The grain boundaries are highly stable during reaction and show specific rates at least two orders of magnitude higher than other sites on the palladium on alumina (Pd/Al 2 O 3 ) catalysts. Theoretical calculations show that strain introduced by the defective structure can enhance C–H bond activation. Introduction of grain boundaries through laser ablation led to further rate increases.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Oxygen Generation via Water Splitting by a Novel Biogenic Metal Ion-Binding Compound

The discovery that MB will couple the oxidation of H 2 O to metal ion reduction and the release of O 2 suggests that methanotrophs expressing MB may be able to maintain their activity under hypoxic/anoxic conditions through the “self-generation” of dioxygen required for the initial oxidation of methane to methanol. Such an ability may be an important factor in enabling methanotrophs to not only colonize the oxic-anoxic interface where methane concentrations are highest but also tolerate significant temporal fluctuations of this interface.

59 BASIC BIOLOGICAL SCIENCES↗

Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean

ABSTRACT Given the vast quantity of oil and gas input to the marine environment annually, hydrocarbon degradation by marine microorganisms is an essential ecosystem service. Linkages between taxonomy and hydrocarbon degradation capabilities are largely based on cultivation studies, leaving a knowledge gap regarding the intrinsic ability of uncultured marine microbes to degrade hydrocarbons. To address this knowledge gap, metagenomic sequence data from the Deepwater Horizon (DWH) oil spill deep-sea plume was assembled to which metagenomic and metatranscriptomic reads were mapped. Assembly and binning produced new DWH metagenome-assembled genomes that were evaluated along with their close relatives, all of which are from the marine environment (38 total). These analyses revealed globally distributed hydrocarbon-degrading microbes with clade-specific substrate degradation potentials that have not been reported previously. For example, methane oxidation capabilities were identified in all Cycloclasticus . Furthermore, all Bermanella encoded and expressed genes for non-gaseous n -alkane degradation; however, DWH Bermanella encoded alkane hydroxylase, not alkane 1-monooxygenase. All but one previously unrecognized DWH plume member in the SAR324 and UBA11654 have the capacity for aromatic hydrocarbon degradation. In contrast, Colwellia were diverse in the hydrocarbon substrates they could degrade. All clades encoded nutrient acquisition strategies and response to cold temperatures, while sensory and acquisition capabilities were clade specific. These novel insights regarding hydrocarbon degradation by uncultured planktonic microbes provides missing data, allowing for better prediction of the fate of oil and gas when hydrocarbons are input to the ocean, leading to a greater understanding of the ecological consequences to the marine environment. IMPORTANCE Microbial degradation of hydrocarbons is a critically important process promoting ecosystem health, yet much of what is known about this process is based on physiological experiments with a few hydrocarbon substrates and cultured microbes. Thus, the ability to degrade the diversity of hydrocarbons that comprise oil and gas by microbes in the environment, particularly in the ocean, is not well characterized. Therefore, this study aimed to utilize non-cultivation-based ‘omics data to explore novel genomes of uncultured marine microbes involved in degradation of oil and gas. Analyses of newly assembled metagenomic data and previously existing genomes from other marine data sets, with metagenomic and metatranscriptomic read recruitment, revealed globally distributed hydrocarbon-degrading marine microbes with clade-specific substrate degradation potentials that have not been previously reported. This new understanding of oil and gas degradation by uncultured marine microbes suggested that the global ocean harbors a diversity of hydrocarbon-degrading bacteria, which can act as primary agents regulating ecosystem health.

Howe, Kathryn L.↗

Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new intrinsically disordered regions in proteins

Borgs are huge, linear extrachromosomal elements associated with anaerobic methane-oxidizing archaea. Striking features of Borg genomes are pervasive tandem direct repeat (TR) regions. Here, we present six new Borg genomes and investigate the characteristics of TRs in all ten complete Borg genomes. We find that TR regions are rapidly evolving, recently formed, arise independently, and are virtually absent in host Methanoperedens genomes. Flanking partial repeats and A-enriched character constrain the TR formation mechanism. TRs can be in intergenic regions, where they might serve as regulatory RNAs, or in open reading frames (ORFs). TRs in ORFs are under very strong selective pressure, leading to perfect amino acid TRs (aaTRs) that are commonly intrinsically disordered regions. Proteins with aaTRs are often extracellular or membrane proteins, and functionally similar or homologous proteins often have aaTRs composed of the same amino acids. We propose that Borg aaTR-proteins functionally diversify Methanoperedens and all TRs are crucial for specific Borg–host associations and possibly cospeciation.

59 BASIC BIOLOGICAL SCIENCES↗