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DOE OSTI2020

Multiple social platforms reveal actionable signals for software vulnerability awareness: A study of GitHub, Twitter and Reddit

Software vulnerabilities are flaws in computer systems that leave users open to attack. In many cases, these vulnerabilities go unnoticed and remain unresolved in codebases. Thus, awareness of software vulnerabilities among the public is crucial to ensure effective cybersecurity practices, the development of high quality software, and ultimately national security. This awareness can be better understood by studying the spread and evolution of software vulnerability discussions in online communities. This work is the first to evaluate and contrast how discussions about software vulnerabilities spread on three social platforms -- Twitter, GitHub, and Reddit. To lay the groundwork, we showcase a novel fundamental framework for measuring information spread that identifies the spread mechanisms and observables across platforms, the units of information, and the groups of measurements that can be applied to focus on a specific phenomena e.g., information cascades. We then analyze and contrast social network topologies for three example social networks and measure the scale and speed of the spread of discussion of specific vulnerabilities to understand how far and how widely they spread, how many users participate in discussions, and the duration of their spread. To demonstrate the awareness of more impactful software vulnerabilities, a subset of our analysis focuses on vulnerabilities targeted during recent major cyber attacks as well as vulnerabilities exploited by advanced persistent threat groups. We discover that usually, vulnerability discussions start on GitHub, before occurring on Twitter and Reddit. While studying how some user-level and content-level characteristics influence vulnerability spread, we observe that Twitter discussions started by users predicted to be humans have larger size, breadth, depth, adoption rate, lifetime, and structural virality compared to those started by users predicted to be bots. On Reddit, we contrast the differences in thread structure that originate from posts with positive, negative and neutral polarity. We find that posts that are positive have larger, deeper and wider discussions compared to negative and neutral posts. We anticipate the results of our analysis to not only increase the understanding of software vulnerability awareness but also inform models for simulating information spread across multiple social environments online.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Single-Bunch Instabilities at the Fermilab Recycler Ring

Understanding and characterizing collective instabilities is critical for high-intensity operation at the Fermilab Recycler Ring. This work presents an application of the the Nested Head-Tail (NHT) formalism for modeling single-bunch transverse instabilities, incorporating analytical solutions to the resistive wall impedances in the absence of space charge. Predicted growth rates and mode structures are benchmarked against PyHEADTAIL simulations and ongoing experimental measurements. The experimental program includes studies of bare-machine instabilities at different machine parameters. These results support the understanding of naturally-occurring instabilities in the Recycler and contribute to the development of predictive tools for beam stability in future high-intensity configurations.

Gonzalez-Ortiz, C. [Fermilab]↗

DOE OSTI2024

Evaluating Radiation Impact on Transmon Qubits Using a Fast Decay Protocol in Above and Underground Laboratories

Superconducting qubits can be sensitive to sudden energy deposits caused by ambient radioactivity and cosmic rays. Previous studies have focused on understanding possible correlated effects over time and distance due to this radiation. In this study‚ for the first time‚ we directly compare the response of a transmon qubit measured initially at the SQMS above-ground facility (Fermilab‚ Illinois‚ USA) and then at the deep underground Gran Sasso Laboratory (INFN-LNGS‚ Italy). We observe the same average qubit lifetime of roughly 80 microseconds at both facilities. We then apply a fast decay detection protocol and investigate the time structure and relative rates of triggered events due to radiation versus intrinsic noise‚ comparing the above and underground performance of several high-coherence qubits. Using gamma sources of variable intensity we calibrate the response of the qubit to different levels of radiation in an environment with minimal background radiation. Results indicate that qubits respond to a strong gamma source‚ and it is possible to detect particle impacts. However‚ we do not observe a difference in radiation-induced-like events when comparing the above and underground results for niobium-based transmon qubits with sapphire substrates. We conclude that the majority of these events are not radiation-related and are attributed to other noise sources‚ which by far dominate single-qubit errors in modern transmon qubits. [1] Dominicis‚ Roy et al. arXiv:2405.18355

Roy, Tanay↗

DOE OSTI2025

Single-Bunch Instabilities at the Fermilab Recycler Ring

Gonzalez-Ortiz, Cristhian [Fermilab]↗

DOE OSTI2022

Bacterial Membranes Are More Perturbed by the Asymmetric Versus Symmetric Loading of Amphiphilic Molecules

Characterizing the biophysical properties of bacterial membranes is critical for understanding the protective nature of the microbial envelope, interaction of biological membranes with exogenous materials, and designing new antibacterial agents. Presented here are molecular dynamics simulations for two cationic quaternary ammonium compounds, and the anionic and nonionic form of a fatty acid molecule interacting with a Staphylococcus aureus bacterial inner membrane. The effect of the tested materials on the properties of the model membranes are evaluated with respect to various structural properties such as the lateral pressure profile, lipid tail order parameter, and the bilayer’s electrostatic potential. Conducting asymmetric loading of molecules in only one leaflet, it was observed that anionic and cationic amphiphiles have a large impact on the Staphylococcus aureus membrane’s electrostatic potential and lateral pressure profile as compared to a symmetric distribution. Nonintuitively, we find that the cationic and anionic molecules induce a similar change in the electrostatic potential, which points to the complexity of membrane interfaces, and how asymmetry can induce biophysical consequences. Finally, we link changes in membrane structure to the rate of electroporation for the membranes, and again find a crucial impact of introducing asymmetry to the system. Understanding these physical mechanisms provides critical insights and viable pathways for the rational design of membrane-active molecules, where controlling the localization is key.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Combustion studies of n-butyl acetate synthesized by a new biological process and comparisons with neat n-butyl acetate

Blending petroleum fuels with biofuels is a common approach for stemming the depletion of crude oil while also mitigating the impact of their combustion on the environment. It has recently been considered that n-butyl acetate (BA, C6H12O2, boiling point of 399K) could be a viable biofuel additive to diesel fuel. This paper reports the combustion dynamics of BA droplets in the absence of external convection. Two grades of BA were examined: one synthesized by a new process that uses a solventogenic Clostridium strain through an extractive fermentation process using n-hexadecane as the extractant (SBA); the other commercially available as a high-purity (99.9%) 'neat' BA grade produced by Fischer esterification (NBA). The mass concentration of by-products from the synthesis process amounted to approximately 6% of the total composition and included n-butanol, n-hexadecane, iso-propyl alcohol and ethyl acetate. The platform used to study the combustion of commercial and synthesized BA was an isolated droplet burning with spherical symmetry. Initial droplet diameters were fixed at 0.6 mm. Experiments were carried out in a drop tower to promote one-dimensional transport dynamics, in the standard atmosphere, and with ignition accomplished by spark discharge. Differences in droplet burning rates and flame structures were undetectable between NBA and SBA, despite the differences in burning among the SBA components individually. The results presented show that the new synthesis process for butyl acetate yields a sustainable alternative to conventional methodologies with burning characteristics that are identical to NBA in stagnant gas transport fields.

Wang, Yujie↗

DOE OSTI2023

Evidence for Suppression of Structure Growth in the Concordance Cosmological Model

We present evidence for a suppressed growth rate of large-scale structure during the dark-energy dominated era. Modeling the growth rate of perturbations with the ``growth index'' γ, we find that current cosmological data strongly prefer a higher growth index than the value γ=0.55 predicted by general relativity in a flat ΛCDM cosmology. Both the cosmic microwave background data from Planck and the large-scale structure data from weak lensing, galaxy clustering, and cosmic velocities separately favor growth suppression. When combined, they yield γ = 0.633$^{+0.025}_{–0.024}$, excluding γ = 0.55 at a statistical significance of 3.7σ. The combination of fσ8 and Planck measurements prefers an even higher growth index of γ = 0.639$^{+0.024}_{–0.025}$, corresponding to a 4.2σ-tension with the concordance model. In Planck data, the suppressed growth rate offsets the preference for nonzero curvature and fits the data equally well as the latter model. Furthermore, a higher γ leads to a higher matter fluctuation amplitude S 8 inferred from galaxy clustering and weak lensing measurements, and a lower S 8 from Planck data, effectively resolving the S 8 tension.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Effects of charging rates on LiNi 0.6 Mn 0.2 Co 0.2 O 2 (NMC622)/graphite Li-ion cells

Enabling fast charging capability of lithium-ion battery is of great importance to widespread adoption of electric vehicles. Increasing the charging rates from state-of-the-art 2C (30 min) to 6C (10 min) requires deep understanding on the cell aging mechanism. Here, 400 mAh pouch cells are cycled at 1C, 4C and 6C charging rates with 1C discharging rate. Capacity fading, cathode structural changes, Li inventory loss, electrolyte composition changes and Li plating on graphite electrodes are thoroughly studied by various characterization techniques. The rapid capacity fading in cells at 6C charging rate is mainly due to Li inventory loss from cathode structure and metallic Li plating on graphite electrode at higher charging rate. Post-mortem analysis also revealed changes in electrolyte such as increased salt molarity and transesterification during fast charging.

25 ENERGY STORAGE↗

DOE OSTI2025

Exploiting Synergies Between Lensing and BAO Surveys for Improved Cosmological Constraints

Pinning down the nature of dark energy is one of the most pressing questions in modern physics and is one of the five key science drivers identified in the P5 report [P514]. Dark energy is thought to be either a cosmological constant with an equation of state w = P/ρ = −1 which remains constant at all times, a new type of fluid with an equation of state that varies with time (w ̸= constant), or dark energy might indicate a breakdown of Einstein’s Theory of General Relativity (GR). It is of critical importance to distinguish between these three scenarios. This can only be accomplished by ambitious and demanding measurements of both the expansion rate of the universe (to track the time evolution of dark energy) together with measurements of the rate at which cosmic structures, such as galaxies and clusters of galaxies, grow with time (the “growth rate”). Because of the challenging nature of such observations, and because no single probe simultaneously measures both expansion and growth, the Dark Energy Task Force [A+06] emphasized the importance of using multiple distinct methods to characterize dark energy.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

The advanced evolution of massive stars

The nuclear rates for reactions involving 12 C and 16 O are key to computing the energy release and nucleosynthesis evolution of massive stars during their advanced burning phases. Ultimately, these burning rates shape the stellar structure and evolution and influence the nature of the compact objects produced at the end of the stellar life. We explore the implications of new nuclear reaction rates from both experimental and theoretical studies for 12 C(α, γ) 16 O, 12 C+ 12 C, 12 C+ 16 O, and 16 O+ 16 O reactions for massive stars. Our goal is to investigate how the chemical structure and nucleosynthesis evolve from the He-exhaustion stage to the O-burning phase and how these processes influence the ultimate stellar fate. We computed rotating and non-rotating models for stars of different masses at solar metallicity. We used the stellar evolution code GENEC, which includes a large network of nuclear reactions and isotopes involved in advanced phases, as well as updated rates for 12 C(α,γ) 16 O. For the three fusion reactions involving 12 C and 16 O, we considered new rates following a data-driven fusion suppression scenario (hereafter HIN(RES)) and new theoretical rates obtained with time-dependent Hartree-Fock (TDHF) calculations. The updated 12 C(α, γ) 16 O rates mainly impact the chemical structure evolution changing the 12 C/ 16 O ratio at He-exhaustion and have little effect on the CO core mass. This variation in the 12 C/ 16 O ratio is in some cases critical for predicting the final fate of the model, which is very sensitive to 12 C abundance, and in particular the 20 M ⊙ remnant may change from a black hole to a neutron star. The He-burning (C-burning) lifetime is also decreased (increased) by about −2% (+15%). The combined new rates for 12 C+ 12 C and 16 O+ 16 O fusion reactions according to the HIN(RES) model lead to shorter C- and O-burning lifetimes by ≈ − 10%, and −50%, respectively, and shift the ignition conditions to higher temperatures and densities. In contrast, the theoretical TDHF rates primarily affect C-burning, increasing its duration by about 30% and lowering the ignition temperature. These changes modify the chemical structure of the core, the size and duration of C-burning shells, and hence their compactness. They also impact the central and shell nucleosynthesis (by ±1 dex and by factors of ±2–10, respectively), while 12 C+ 16 O reaction rates variations remain the least important.

abundances↗

DOE OSTI2020

Enabling high rate capability, low internal resistance, and excellent cyclability for vanadium redox flow batteries utilizing ultrafast laser-structured graphite felt

The electrochemical performance of vanadium redox flow batteries (VRFBs) was enhanced via laser-patterned graphite felt (GF) electrodes. The laser-structured GF electrodes engineered via preparing a series of well-ordered microscopic channel structures with an average width of 200 μm, creating a three-dimensional carbon framework. The ultrafast laser patterning increased the porosity by 10%, as compared to pristine electrode. The analysis of the overpotential distribution using electrochemical impedance spectroscopy revealed that the electrode polarization involving charge transfer and diffusion resistance is strongly alleviated with the aid of carbon micro-perforation. The advanced design of laser-structured GF electrode also exhibits high rate capability, low internal resistance, and excellent cyclability. The improved performance was attributed to the synergistic effect involving (i) high electrochemically active surface area for rapid electrochemical reactions (i.e., V(II)/V(III) and V(IV)/V(V) redox couples) and (ii) excellent transport properties for facile electron/ion/species transport. The micro-scale channels created with the laser-ablation technique act as capillary structures and enabled homogeneous and rapid wetting of GF electrodes as formulated with the classical Washburn equation. The VRFB equipped with the laser-structured GF electrodes delivered a high discharge capacity with exceptional capacity retention upon extended cycling (>84.9%). In conclusion, accordingly, the design of laser-structured electrode paves the pathway towards finely tuning the electrode internal microstructure for improved cyclability, durability, and capacity retention in various electrochemical energy storage/conversion devices (e.g. all-vanadium redox flow batteries).

25 ENERGY STORAGE↗

DOE OSTI2022

The importance of long-timescale simulations for driven systems: An example of He bubble growth at a W GB

Accelerated Molecular Dynamics (AMD) is used to study complex systems under realistic conditions by extending the timescales accessible by Molecular Dynamics. However, some studies rely instead on driving atomic systems harder with higher temperature, faster growth, etc. Here, we study He bubble growth at a W grain boundary as an illustration of harnessing AMD methods to avoid consequences of over-driving the system. The growth mechanisms observed for a He bubble grown under realistic conditions are compared to bubbles-grown orders of magnitude faster, at rates typical of conventional molecular dynamics simulations. We find that progressive growth mechanisms and bubble structures depend on the rate at which the bubble is grown providing further evidence that care must be taken when simulating the dynamics of driven systems such as this one.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Effect of Alkali-Silica Reaction Expansion Rate and Confinement on Concrete Degradation

Alkali-silica reaction (ASR) is a major deterioration mechanism that affects the durability of concrete structures. As the slow rate of ASR development and the restrained expansion in field concrete might affect the development of ASR damage, an experimental program was performed to investigate the effects of the rate of ASR expansion and confinement on the degradation of mechanical properties of concretes. Literature data on the degradation of mechanical properties of concretes with ASR expansion were collected and analyzed to investigate the influence of the rate of ASR expansion and confinement on the degradation trends. Degradation of mechanical properties was found to be significantly influenced by the rate of ASR expansion and slightly affected by confinements. The slow rate of ASR expansion seems to be beneficial in limiting concrete degradation. The effects of confinement seem to be related to the direction of restraint and crack orientations.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Irradiation at Ultra-High (FLASH) Dose Rates Reduces Acute Normal Tissue Toxicity in the Mouse Gastrointestinal System

Preclinical studies using ultra-high dose rate (FLASH) irradiation have demonstrated reduced normal tissue toxicity compared with conventional dose rate (CONV) irradiation, although this finding is not universal. We investigated the effect of temporal pulse structure and average dose rate of FLASH compared with CONV irradiation on acute intestinal toxicity.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2022

Mesoporous MoO 2 thin films for high rate Li + storage: Effect of crystallinity and porous structure

MoO 2 has attracted much recent attention as a high capacity energy storage material. While much of the current work on MoO 2 has been focused on the high capacity four-electron reduction, this reaction is limited to slow charging process due to the large volume change and phase transitions involved. In this study we focus on one-electron insertion reactions and demonstrate that ordered mesoporous thin films of MoO 2 can show signatures of pseudocapacitive charge storage. Mesoporous MoO 2 (mp-MoO 2 ) thin films were treated at different temperatures between 350 and 700 °C to explore the role of crystallinity and nanoscale structure on charging dynamics. The porosity and pore size decreased while the crystallinity and grain size increased as the calcination temperature increased. Materials processed at 600 °C showed the best electrochemical performance due to an optimized combination of high crystallinity and small grain size. These materials could be charged and discharged in 24 s while still achieving a Li + storage capacity of 158 mAh/g. While such thin film systems do not constitute a practical energy storage device, the work here provides structural design parameters for the production of future bulk nanoporous materials.

25 ENERGY STORAGE↗

DOE OSTI2020

Structural, Spectroscopic, and Kinetic Insight into the Heating Rate Dependence of Studtite and Metastudtite Dehydration

Uranyl peroxide minerals studtite (UO 2 O 2 ·4H 2 O) and metastudtite (UO 2 O 2 ·2H 2 O) are important materials in the nuclear fuel cycle. When heated, they dehydrate and transform to amorphous uranium oxides (UO x ), yet phase stability and heating rate dependence of these transformations are poorly understood. This information is critical to proper management of fuel cycle materials. In this work, we use in situ powder X-ray diffraction (PXRD), Raman spectroscopy, and thermogravimetric analysis (TGA) to monitor the dehydration of studtite and metastudtite. Strong linear correlation between the heating rate and phase transition temperature is observed. Geometric contraction and diffusion-related kinetic models describe studtite dehydration at slow heating rates, whereas Avrami–Erofeev or reaction order models become more accurate for faster thermal treatments. A second order model describes the transition from metastudtite to UO x regardless of the heating rate. Water retention during studtite dehydration is indicated by PXRD, Raman spectroscopy, and TGA. Here, we observe mixed-phase UO x dehydration products of metastudtite with a likely formation mechanism involving conversion of some uranyl centers from hexagonal to pentagonal bipyramidal coordination units via peroxide liberation. Our observations clarify over 100 years of measurements on these materials and represent an advancement in understanding the chemical behavior of nuclear fuel cycle materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function

The evolutionary rates of functionally related genes often covary. We present a gene coevolution network inferred from examining nearly 3 million orthologous gene pairs from 332 budding yeast species spanning ~400 million years of evolution. Network modules provide insight into cellular and genomic structure and function. Examination of the phenotypic impact of network perturbation using deletion mutant data from the baker’s yeast Saccharomyces cerevisiae, which were obtained from previously published studies, suggests that fitness in diverse environments is affected by orthologous gene neighborhood and connectivity. Mapping the network onto the chromosomes of S. cerevisiae and Candida albicans revealed that coevolving orthologous genes are not physically clustered in either species; rather, they are often located on different chromosomes or far apart on the same chromosome. The coevolution network captures the hierarchy of cellular structure and function, provides a roadmap for genotype-to-phenotype discovery, and portrays the genome as a linked ensemble of genes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

A Comprehensive Experimental Study on Microstructure‐Graded Graphite Anodes for Enhancing Fast‐Charging Capability of Lithium‐Ion Batteries

Lithium‐ion batteries with high gravimetric capacity density and improved cycle life performance under fast‐charging conditions are crucial for widespread electric vehicle (EV) adoption. This study investigates how designing graphite anode microstructure, specifically porosity, and particle‐size gradients, improves lithium‐ion (Li + ) transport during fast‐charging conditions. Three‐layered graphite anodes with varying porosity (24%, 36%, 46%) and particle size gradients (3, 5, 10 μm) were compared to a conventional single‐layered electrode in half‐cell configurations. At room temperature and high discharge rate (2C), both gradient structures showed significantly enhanced capacity retention (80% and 67% vs. 50%) compared to the conventional electrode, highlighting the effectiveness of microstructure engineering for fast charging. The study also investigated the temperature's impact on cycle life. After 200 cycles at 2°C and 45°C, all gradient structures demonstrated superior capacity retention (≈80%) compared to the conventional electrode (35%), suggesting the gradients mitigate degradation rate at high temperatures. Electrochemical impedance spectroscopy confirmed superior Li+ diffusion and lower resistivity in gradient electrodes. Simulations explored the influence of gradient profiles on reaction kinetics across the electrode thickness. Overall, this research demonstrates that the fast‐charging capability of graphite electrodes can be greatly enhanced by engineering the electrode microstructure, thereby making EV technology more accessible and appealing.

Ahmadi, Soma↗