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DOE OSTI2023

Thermal adaptation of soil microbial growth traits in response to chronic warming

ABSTRACT Adaptation of soil microbes due to warming from climate change has been observed, but it remains unknown what microbial growth traits are adaptive to warming. We studied bacterial isolates from the Harvard Forest Long-Term Ecological Research site, where field soils have been experimentally heated to 5°C above ambient temperature with unheated controls for 30 years. We hypothesized that Alphaproteobacteria from warmed plots have (i) less temperature-sensitive growth rates; (ii) higher optimum growth temperatures; and (iii) higher maximum growth temperatures compared to isolates from control plots. We made high-throughput measurements of bacterial growth in liquid cultures over time and across temperatures from 22°C to 37°C in 2–3°C increments. We estimated growth rates by fitting Gompertz models to the growth data. Temperature sensitivity of growth rate, optimum growth temperature, and maximum growth temperature were estimated by the Ratkowsky 1983 model and a modified Macromolecular Rate Theory (MMRT) model. To determine evidence of adaptation, we ran phylogenetic generalized least squares tests on isolates from warmed and control soils. Our results showed evidence of adaptation of higher optimum growth temperature of bacterial isolates from heated soils. However, we observed no evidence of adaptation of temperature sensitivity of growth and maximum growth temperature. Our project begins to capture the shape of the temperature response curves, but illustrates that the relationship between growth and temperature is complex and cannot be limited to a single point in the biokinetic range. IMPORTANCE Soils are the largest terrestrial carbon sink and the foundation of our food, fiber, and fuel systems. Healthy soils are carbon sinks, storing more carbon than they release. This reduces the amount of carbon dioxide released into the atmosphere and buffers against climate change. Soil microbes drive biogeochemical cycling and contribute to soil health through organic matter breakdown, plant growth promotion, and nutrient distribution. In this study, we determined how soil microbial growth traits respond to long-term soil warming. We found that bacterial isolates from warmed plots showed evidence of adaptation of optimum growth temperature. This suggests that increased microbial biomass and growth in a warming world could result in greater carbon storage. As temperatures increase, greater microbial activity may help reduce the soil carbon feedback loop. Our results provide insight on how atmospheric carbon cycling and soil health may respond in a warming world.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Atmosphere-Biosphere Interaction Study (Field Campaign Report)

The objective of this campaign was to collect hyperspectral reflectance measurements and complementary optical and infrared data of land surface (i.e., vegetation and soil) throughout the growing season (i.e., from March to September) at high temporal frequency (e.g., < 30 minutes). To collect the measurements, the EcoSpec system, a tower-based sensor system housing seven optical and infrared sensors that was developed at Argonne National Laboratory, was deployed to the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility Southern Great Plains (SGP) atmospheric observatory (within the crop, south of the eddy correlation flux measurement system [ECOR] tower). The EcoSpec system consists of a spectroradiometer having 2,151 channels (350–2,500 nm), red-greenblue (RGB) camera, diffuse radiometer, thermal infrared (TIR) sensors, albedometers, Photochemical Reflectance Index (PRI) sensors, Normalized Difference Vegetation Index (NDVI) sensors, and wetness sensor. The system is designed to collect an array of land surface measurements, including hyperspectral reflectance of plants and soils, RGB photos capturing contextual information of land surface, radiant temperature of sky and land surface, incoming and reflected shortwave radiation, and incoming radiation components (direct and diffuse) as frequent as every minute from up to 12 discrete positions around the tower. This would allow us to capture inherent heterogeneity of the terrestrial ecosystem and to obtain representative spectral signatures of the plant and soil surfaces via averaging those measurements. The SGP site provides advanced atmospheric and other physical measurements that are essential for our investigation of ecosystem functions using hyperspectral reflectance measurements of land surfaces. Located in the mid-latitudes, the SGP site exhibits dynamic seasonality and a wide range of meteorological variability and flux properties that make it ideal for studying interactions between near-surface atmosphere and biosphere across a range of environmental conditions. The atmosphere, plants, and soil control terrestrial carbon and water cycles. To make more accurate climate forecasts, researchers need to understand ecosystem dynamics at the biosphere–atmosphere interface. Even though our ability to forecast ecosystem dynamics and climate at both the regional and global scales has advanced significantly, we still do not know how local phenomena affecting water and carbon fluxes—such as diurnal variations—interrelate with large-scale atmospheric/climate phenomena, and vice versa. The lack of a more thorough understanding of ecosystem dynamics and climate interactions is a key knowledge gap for the improvement of earth system models (ESMs).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Investigating the Impacts of Changes in Land Cover and Land Management on Climate Using ACME

The overall objective of our ACME project is to advance the treatment of land disturbance, particularly land use and land cover changes (LULCCs) and land management practices, and couple it with ALM to fully explore the potential contribution of LULCC and land management practices to future emissions and mitigation opportunities, and terrestrial carbon sources and sinks, and climate change. To achieve this objective, we have incorporated the advances made by DOE in IAM and ESM modeling efforts and our research at UIUC in global land disturbance, carbon management, and socioeconomic research.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Understanding the impacts of elevated CO2 and vapor pressure deficit on tree mortality - CRADA 599 (Abstract)

Many studies have examined the effects of rising CO2 on gas exchange and growth of plants. However, concurrent with the rise in CO2 has been the rise in temperature and associated drying of the atmosphere, or vapor pressure deficit (VPD), which increases tree mortality. Little attention has been given to the net outcome of these antagonistic drivers of plant performance. The net balance of rising CO2 and VPD upon plant and ecosystem function is possibly the largest uncertainty in model projections of the terrestrial carbon and water cycles. The purpose of this CRADA is to improve our predictive understanding of tree mortality under our changing environment. We will collaborate with WSU to provide a mechanistic understanding of the relative impacts of CO2 and VPD on tree mortality that scales across the globe. Ultimately, we will understand the potential impacts and mechanisms underlying CO2 and VPD responses and will enable improved prediction of future tree mortality.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Five draft genome assemblies from Bacillaceae isolated from a degraded wetland environment

Abstract We isolated 5 Bacillaceae from a degraded wetland environment and sequenced their genomes using Illumina NextSeq. Here, we report draft genome sequences of Bacillus velezensus-SC119, Priestia megaterium-SC120, Bacillus zhangzhouensis-SC123, Bacillus pumilis-SC124, and Bacillus idriensis-SC127. The genomes range between 3,657,353 and 5,772,725 base pairs with %GC between 37.62% and 46.38%. Introduction Wetland environments play critical roles in the terrestrial carbon and water cycles and microbial communities are key players in healthy ecosystem function. Endospore forming bacteria in the Bacillaceae family are metabolically and genomically diverse soil heterotrophs that influence plant health, carbon and nitrogen cycling, and often produce diverse natural products that influence other bacterial and non-bacterial species in their environment (1). We collected two soil samples on January 19, 2023 from 42°43'12.7"N 73°45'01.4"W. One was highly hydrated and within a patch of invasive common reeds (Phragmites sp.) and the other was near the base of an Eastern cottonwood tree (Populus deltoides). Bacillus pumilis strain SC124 was isolated from the soil from near the cottonwood tree, while Bacillus velezensis strain SC119, Priestia megaterium strain SC120, Bacillus zhangzhouensis strain SC123, Bacillus idriensis strain SC127 and were isolated from the marshy soil.

isolate, wetlands, genome announcement↗

NASA NTRS1978

Light element geochemistry of the Apollo 12 site

Analytical techniques of improved sensitivity have revealed details of the concentrations and isotopic compositions of light elements for a comprehensive suite of samples from the Apollo 12 regolith. These samples show a wide spread in maturity, although maximum contents observed for solar wind elements are less than observed at other sites, possibly reflecting relative recency of craters at the Apollo 12 site. Isotopic composition of nitrogen is consistent with the idea that N-15/N-14 in the solar wind has increased with time, at least a major part of this increase having occurred in the past 3.1 Gyr. Sulfur isotope systematics support a model in which sulfur is both added to the regolith, by meteoritic influx, and lost, by an isotopically selective process. Most soils from this site are heavily contaminated with terrestrial carbon.

Kerridge, J. F.↗

NASA NTRS1981

Cometary material and the origins of life on earth

The role of cometary material in determining the environmental conditions of the prebiotic earth is reviewed. The organic synthesis pathways that occur in dense interstellar clouds and in comets are examined, and complex organic molecules believed to exist (amino acids, carboxylic acids, purines, pyrimidines and hydrocarbons) based on spectral detections of degradation products are noted. Estimates of the amount of terrestrial volatiles of cometary origin that may have been acquired in collisions during the early history of the earth are considered, and shown to dominate any estimated contributions to terrestrial carbon from other extraterrestrial sources. Current evidence that the origin and early evolution of life began about four billion years ago is discussed in relation to the cometary bombardment processes occurring at the time and the resultant shock waves, reducing atmospheres and reactive chemical species. It is thus concluded that comets contributed significantly to the processes of chemical evolution necessary for the emergence of life on earth.

Lazcano-Araujo, A.↗

NASA NTRS1992

Models of atmosphere-ecosystem-hydrology interactions: Approaches and testing

Interactions among the atmosphere, terrestrial ecosystems, and the hydrological cycle have been the subject of investigation for many years, although most of the research has had a regional focus. The topic is broad, including the effects of climate and hydrology on vegetation, the effects of vegetation on hydrology, the effects of the hydrological cycle on the atmosphere, and interactions of the cycles via material flux such as solutes and trace gases. The intent of this paper is to identify areas of critical uncertainty, discuss modeling approaches to resolving those problems, and then propose techniques for testing. I consider several interactions specifically to illustrate the range of problems. These areas are as follows: (1) cloud parameterizations and the land surface, (2) soil moisture, and (3) the terrestrial carbon cycle.

Schimel, David S.↗

NASA NTRS2004

Use of EO-1 Hyperion Data for Inter-Sensor Calibration of Vegetation Indices

Numerous satellite sensor systems useful in terrestrial Earth observation and monitoring have recently been launched and their derived products are increasingly being used in regional and global vegetation studies. The increasing availability of multiple sensors offer much opportunity for vegetation studies aimed at understanding the terrestrial carbon cycle, climate change, and land cover conversions. Potential applications include improved multiresolution characterization of the surface (scaling); improved optical-geometric characterization of vegetation canopies; improved assessments of surface phenology and ecosystem seasonal dynamics; and improved maintenance of long-term, inter-annual, time series data records. The Landsat series of sensors represent one group of sensors that have produced a long-term, archived data set of the Earth s surface, at fine resolution and since 1972, capable of being processed into useful information for global change studies (Hall et al., 1991).

Huete, Alfredo↗

NASA NTRS1995

The Effects of Elevated CO2 on a Subtropical Scrub Oak-Palmetto Plant Community

A 2.5 year (1992-1995) pilot study was conducted on the effects of twice ambient CO2 on native scrub oak-palmetto vegetation at Kennedy Space Center (KSC). The effects suggest that rising atmospheric CO2 will increase terrestrial carbon and alter the distribution of carbon among the different pools of carbon.

Vieglais, David↗

NASA NTRS2011

Using EO-1 Hyperion to Simulate HyspIRI Products for a Coniferous Forest: The Fraction of PAR Absorbed by Chlorophyll (fAPAR(sub chl)) and Leaf Water Content (LWC)

This study presents development of prototype products for terrestrial ecosystems in preparation for the future imaging spectrometer planned for the Hyperspectral Infrared Imager (HyspIRI) mission. We present a successful demonstration example in a coniferous forest of two product prototypes: fraction of photosynthetic active radiation (PAR) absorbed by chlorophyll of a canopy (fAPAR(sub chl)) and leaf water content (LWC), for future HyspIRI implementation at 60 m spatial resolution. For this, we used existing 30 m resolution imaging spectrometer data available from the Earth Observing One (EO-1) Hyperion satellite to simulate and prototype the level one radiometrically corrected radiance (L1R) images expected from the HyspIRI visible through shortwave infrared spectrometer. The HyspIRI-like images were atmospherically corrected to obtain surface reflectance, and spectrally resampled to produce 60 m reflectance images for wavelength regions that were comparable to all seven of the MODerate resolution Imaging Spectroradiometer (MODIS) land bands. Thus, we developed MODIS-like surface reflectance in seven spectral bands at the HyspIRI-like spatial scale, which was utilized to derive fAPARchl and LWC with a coupled canopy-leaf radiative transfer model (PROSAIL2) for the coniferous forest[1]. With this study, we provide additional evidence that the fAPARchl product is more realistic for describing the physiologically active canopy than the traditional fAPAR parameter for the whole canopy (fAPAR(sub canopy)), and thus should replace it in ecosystem process models to reduce uncertainties in terrestrial carbon cycle studies and ecosystem studies.

Zhang, Qingyuan↗

NASA NTRS2012

SERVIR Science Applications for Capacity Building

SERVIR is a regional visualization and monitoring system using Earth observations to support environmental management, climate adaptation, and disaster response in developing countries. SERVIR is jointly sponsored by NASA and the U.S. Agency for International Development (USAID). SERVIR has been instrumental in development of science applications to support the decision-making and capacity building in the developing countries with the help of SERVIR Hubs. In 2011, NASA Research Opportunities in Space and Earth Sciences (ROSES) included a call for proposals to form SERVIR Applied Sciences Team (SERVIR AST) under Applied Sciences Capacity Building Program. Eleven proposals were selected, the Principal Investigators of which comprise the core of the SERVIR AST. The expertise on the Team span several societal benefit areas including agriculture, disasters, public health and air quality, water, climate and terrestrial carbon assessments. This presentation will cover the existing SERVIR science applications, capacity building components, overview of SERVIR AST projects, and anticipated impacts.

Limaye, Ashutosh↗

NASA NTRS2012

Using EO-1 Hyperion to Simulate HyspIRI Products for a Coniferous Forest: The Fraction of PAR Absorbed by Chlorophyll (fAPAR(sub chl)) and Leaf Water Content(LWC)

This paper presents development of prototype products for terrestrial ecosystems in preparation for the future imaging spectrometer planned for the Hyperspectral Infrared Imager (HyspIRI) mission. We present a successful demonstration example in a coniferous forest of two product prototypes: fraction of photosynthetically active radiation (PAR) absorbed by chlorophyll of a canopy (fAPARchl) and leaf water content (LWC), for future HyspIRI implementation at 60-m spatial resolution. For this, we used existing 30-m resolution imaging spectrometer data available from the Earth Observing One (EO-1) Hyperion satellite to simulate and prototype the level one radiometrically corrected radiance (L1R) images expected from the HyspIRI visible through shortwave infrared spectrometer. The HyspIRIlike images were atmospherically corrected to obtain surface reflectance and spectrally resampled to produce 60-m reflectance images for wavelength regions that were comparable to all seven of the MODerate resolution Imaging Spectroradiometer (MODIS) land bands. Thus, we developed MODIS-like surface reflectance in seven spectral bands at the HyspIRI-like spatial scale, which was utilized to derive fAPARchl and LWC with a coupled canopy-leaf radiative transfer model (PROSAIL2) for the coniferous forest. With this paper, we provide additional evidence that the fAPARchl product is more realistic in describing the physiologically active canopy than the traditional fAPAR parameter for the whole canopy (fAPARcanopy), and thus, it should replace it in ecosystem process models to reduce uncertainties in terrestrial carbon cycle and ecosystem studies.

Earth Observing One↗

NASA NTRS2015

Martian Chlorobenzene Identified by Curiosity in Yellowknife Bay: Evidence for the Preservation of Organics in a Mudstone on Mars

The Sample Analysis at Mars (SAM) instrument on the Curiosity rover is designed to determine the inventory of organic and inorganic volatiles thermally evolved from solid samples using a combination of evolved gas analysis (EGA), gas chromatography mass spectrometry (GCMS), and tunable laser spectroscopy. The first sample analyzed by SAM at the Rocknest (RN) aeolian deposit revealed chlorohydrocarbons derived primarily from reactions between a martian oxychlorine phase (e.g. perchlorate) and terrestrial carbon from N-methyl-N-(tert-butyldimethylsilyl) trifluoroacetamide (MTBSTFA) vapor present in the SAM instrument background. No conclusive evidence for martian chlorohydrocarbons in the RN sand was found. After RN, Curiosity traveled to Yellowknife Bay and drilled two holes separated by 2.75 m designated John Klein (JK) and Cumberland (CB). Analyses of JK and CB by both SAM and the CheMin x-ray diffraction instrument revealed a mudstone (called Sheepbed) consisting of approx.20 wt% smectite clays, which on Earth are known to aid the concentration and preservation of organic matter. Last year at LPSC we reported elevated abundances of chlorobenzene (CBZ) and a more diverse suite of chlorinated hydrocarbons including dichloroalkanes in CB compared to RN, suggesting that martian or meteoritic organic compounds may be preserved in the mudstone. Here we present SAM data from additional analyses of the CB sample and of Confidence Hills (CH), another drill sample collected at the base of Mt. Sharp. This new SAM data along with supporting laboratory analog experiments indicate that most of the chlorobenzene detected in CB is derived from martian organic matter preserved in the mudstone.

Glavin, D.↗

NASA NTRS2015

Martian Chlorobenzene Identified by Curiosity in Yellowknife Bay: Evidence for the Preservation of Organics in a Mudstone on Mars

Curiosity in Yellowknife↗

NASA NTRS2014

The Search for Organic Compounds of Martian Origin in Gale Crater by the Sample Analysis at Mars (SAM) Instrument on Curiosity

One of the key objectives of the Mars Science Laboratory rover and the Sample Analysis at Mars (SAM) instrument suite is to determine the inventory of organic and inorganic volatiles in the atmosphere and surface regolith and rocks to help assess the habitability potential of Gale Crater. The SAM instrument on the Curiosity rover can detect volatile organic compounds thermally evolved from solid samples using a combination of evolved gas analysis (EGA) and gas chromatography mass spectrometry (GCMS) (Mahaffy et al. 2012). The first solid samples analyzed by SAM, a scoop of windblown dust and sand at Rocknest, revealed several chloromethanes and a C4-chlorinated hydrocarbon derived primarily from reactions between a martian oxychlorine phase (e.g. perchlorate) and terrestrial carbon from N-methyl-N-(tertbutyldimethylsilyl)- trifluoroacetamide (MTBSTFA) vapor present in the SAM instrument background (Glavin et al. 2013). After the analyses at Rocknest, Curiosity traveled to Yellowknife Bay and drilled two separate holes in a fluvio-lacustrine sediment (the Sheepbed unit) designated John Klein and Cumberland. Analyses of the drilled materials by both SAM and the CheMin X-Ray Diffraction instrument revealed a mudstone consisting of ~20 wt% smectite clays (Ming et al. 2013; Vaniman et al. 2013), which on Earth are known to aid the concentration and preservation of organic matter. Oxychlorine compounds were also detected in the Sheepbed mudstone during pyrolysis; however, in contrast to Rocknest, much higher levels of chloromethanes were released from the Sheepbed materials, suggesting an additional, possibly martian source of organic carbon (Ming et al. 2013). In addition, elevated abundances of chlorobenzene and a more diverse suite of chlorinated alkanes including dichloropropane and dichlorobutane detected in Cumberland compared to Rocknest suggest that martian or meteoritic organic carbon sources may be preserved in the mudstone (Freissinet et al. 2013). Chloromethane and dichloromethane were also identified after thermal volatilization of the surface soils by the GCMS instruments at the Viking landing sites, although no other chlorinated hydrocarbons were reported (Biemann et al. 1977). Here we focus on the origin of the chlorinated hydrocarbons detected in the Sheepbed mudstone by SAM and the implications for the preservation of organic matter in near-surface materials on Mars.

Mars Curiosity Rover↗

NASA NTRS2017

Temporal Consistency Between Gross Primary Production and Solar-Induced Chlorophyll Fluorescence in the Ten Most Populous Megacity Areas over Years

The gross primary production (GPP) of vegetation in urban areas plays an important role in the study of urban ecology. It is difficult however, to accurately estimate GPP in urban areas, mostly due to the complexity of impervious land surfaces, buildings, vegetation, and management. Recently, we used the Vegetation Photosynthesis Model (VPM), climate data, and satellite images to estimate the GPP of terrestrial ecosystems including urban areas. Here, we report VPM-based GPP (GPPvpm) estimates for the world's ten most populous megacities during 2000-2014. The seasonal dynamics of GPPvpm during 2007-2014 in the ten megacities track well that of the solar-induced chlorophyll fluorescence (SIF) data from GOME-2 at 0.5deg x 0.5deg resolution. Annual GPPvpm during 2000-2014 also shows substantial variation among the ten megacities, and year-to-year trends show increases, no change, and decreases. Urban expansion and vegetation collectively impact GPP variations in these megacities. The results of this study demonstrate the potential of a satellite-based vegetation photosynthesis model for diagnostic studies of GPP and the terrestrial carbon cycle in urban areas.

urban↗

NASA NTRS2015

The Quick Fire Emissions Dataset (QFED): Documentation of Versions 2.1, 2.2 and 2.4: Technical Report Series on Global Modeling and Data Assimilation - Volume 38

Biomass burning is an important source of particulates and trace gases and a major element of the terrestrial carbon cycle. Well constrained emissions from vegetation fires are needed to model direct and indirect effects of biomass burning aerosols, to model homogeneous and heterogeneous chemistry in the atmosphere, and to perform credible Earth system analysis, and climate and air pollution studies. To improve the performance of NASA Goddard Earth Observing System Model (GEOS) in the areas of atmospheric constituent modeling with a focus on biomass burning we developed the Quick Fire Emissions Dataset (QFED). The QFED emissions are based on the fire radiative power (top-down) approach and draw on the cloud correction method developed in the Global Fire Assimilation System (GFAS). Location and fire radiative power of fires are obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS) Level 2 fire products (MOD14 and MYD14) and the MODIS Geolocation products (MOD03 and MYD03). QFED strengths are high spatial and temporal resolutions and near-real time availability. Daily mean emissions are available at 0.3125 times 0.25 degrees and in recent versions also at 0.1 times 0.1 degrees. QFED provides emissions of black carbon, organic carbon, sulfur dioxide, carbon monoxide, carbon dioxide, PM2.5, ammonia, nitrogen oxides, methyl ethyl ketone, propylene, ethane, propane, n- and i-butane, acetaldehyde, formaldehyde, acetone and methane. Two QFED product systems are maintained by the NASA Global Modeling and Assimilation Office (GMAO): one that produces near real-time daily emissions used operationally in the GEOS-5 Data Assimilation System, and one that produces an extended historical dataset with daily emissions from March 2000 to the present. The historical dataset also provides monthly mean and monthly climatological emissions.

Koster, Randal D.↗