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At least 217 records · Page 12

Evaluation of daily gridded climate products using in situ FLUXNET data and tree growth modeling

Gridded climate data products have facilitated research in climate and ecology by providing meteorological data continuously across large spatial scales. However, the sensitivity of scientific outcomes to dataset choice remains poorly understood, and evaluation using station-based records can favor datasets built heavily on weather stations. Here, we evaluate seven high-resolution daily gridded datasets covering the contiguous United States using independent meteorology from the FLUXNET2015 dataset, with a focus on the implications of dataset choice for process-based tree growth modeling. We find that gridded products tend to capture temperature accurately while consistently overestimating the magnitude and frequency of precipitation and its extremes. Moreover, datasets vary in how they define a ‘day,’ which significantly affects temporal alignment with FLUXNET2015 observations. Despite differences among the datasets, the interannual variability in tree ring simulations is insensitive to dataset choice, likely because daily-scale biases are averaged out through accumulated growth across several months. However, inaccuracies in temperature and precipitation can significantly bias modeled xylem cell production, with systematically higher annual precipitation in the gridded datasets leading to greater xylem production compared to simulations using in situ data. Our results suggest that model applications, especially those that integrate to time scales longer than one day, are likely insensitive to climate dataset choice, but applications that are sensitive to daily climate variations or to absolute climate values need to carefully consider biases in gridded climate products.

54 ENVIRONMENTAL SCIENCES↗

The trailing edge is everywhere: tree rings reveal the transient risk of extinction hidden inside climate envelope forecasts

Given the importance of climate in shaping species’ geographic distributions, climate change poses an existential threat to biodiversity. Climate envelope modeling, the predominant approach used to quantify this threat, presumes that individuals in populations respond to climate variability and change according to species-level responses inferred from spatial occurrence data—such that individuals at the cool edge of a species’ distribution should benefit from warming (the “leading edge”), whereas individuals at the warm edge should suffer (the “trailing edge”). Using 1,558 tree-ring time series of an aridland pine (Pinus edulis) collected at 977 locations across the species’ distribution, we found that trees everywhere grow less in warmer-than-average and drier-than-average years. Ubiquitous negative temperature sensitivity indicates that individuals across the entire distribution should suffer with warming—the entire distribution is a trailing edge. Species-level responses to spatial climate variation are opposite in sign to individual-scale responses to time-varying climate for approximately half the species’ distribution with respect to temperature and the majority of the species’ distribution with respect to precipitation. These findings, added to evidence from the literature for scale-dependent climate responses in hundreds of species, suggest that correlative, equilibrium-based range forecasts may fail to accurately represent how individuals in populations will be impacted by changing climate. A scale-dependent view of the impact of climate change on biodiversity highlights the transient risk of extinction hidden inside climate envelope forecasts and the importance of evolution in rescuing species from extinction whenever local climate variability and change exceeds individual-scale climate tolerances.

54 ENVIRONMENTAL SCIENCES↗

Improving leaf spring phenology modelling for temperate tree species: An integration of the Farquhar–Medlyn photosynthesis model with the optimality‐based approach

Spring leaf phenology in temperate tree species is highly sensitive to climate change and significantly affects plant photosynthetic performance, resource utilization, competition and trophic interactions, thereby impacting various ecosystem functions. Although optimality-based (OPT) approaches for modelling spring phenology are increasingly recognized, the optimal representation of the underlying principle (balancing photosynthesis gains with chilling risks) remains controversial. Here, we integrated a coupled Farquhar–Medlyn photosynthesis model into an existing OPT model, and termed the resulting model R-OPT, and evaluated its performance using the PEP725 dataset, which includes 409,144 site-species-year records from across Europe. Our results show that R-OPT outperforms both the default OPT and non-optimality-based models (e.g. the chilling-forcing trade-off and growing degree day models). This improved performance is consistent within and across five focal tree species but varies by region: R-OPT excels in lowland, moist environments but is less effective in high-altitude, cold, and dry areas, possibly due to an incomplete representation of environmental constraints on photosynthetic carbon gain in these regions. Our research advances leaf spring phenology modelling by emphasizing an optimality principle that balances photosynthetic carbon gain with chilling risk, improving the representation of plant photosynthesis processes and enhancing understanding of environmental factors influencing phenology in the context of climate change.

coupled Farquhar–Medlyn photosynthesis model↗

Tree rings reveal the transient risk of extinction hidden inside climate envelope forecasts

Given the importance of climate in shaping species’ geographic distributions, climate change poses an existential threat to biodiversity. Climate envelope modeling, the predominant approach used to quantify this threat, presumes that individuals in populations respond to climate variability and change according to species-level responses inferred from spatial occurrence data—such that individuals at the cool edge of a species’ distribution should benefit from warming (the “leading edge”), whereas individuals at the warm edge should suffer (the “trailing edge”). Using 1,558 tree-ring time series of an aridland pine (Pinus edulis) collected at 977 locations across the species’ distribution, we found that trees everywhere grow less in warmer-than-average and drier-than-average years. Ubiquitous negative temperature sensitivity indicates that individuals across the entire distribution should suffer with warming—the entire distribution is a trailing edge. Species-level responses to spatial climate variation are opposite in sign to individual-scale responses to time-varying climate for approximately half the species’ distribution with respect to temperature and the majority of the species’ distribution with respect to precipitation. These findings, added to evidence from the literature for scale-dependent climate responses in hundreds of species, suggest that correlative, equilibrium-based range forecasts may fail to accurately represent how individuals in populations will be impacted by changing climate. A scale-dependent view of the impact of climate change on biodiversity highlights the transient risk of extinction hidden inside climate envelope forecasts and the importance of evolution in rescuing species from extinction whenever local climate variability and change exceeds individual-scale climate tolerances.

54 ENVIRONMENTAL SCIENCES↗

A Region-Growing Segmentation Approach to Delineating Timberline from Satellite-Derived Tree Fractional Cover Products

Timberline marks the transitions from continuous forests to sparse forests and tundra landscapes. As the spatial distribution and dynamics of timberline are closely associated with regional energy and carbon balance, mapping timberline is important to a wide range of environmental and ecological studies. However, current timberline delineation approaches remain under-developed. We proposed an automatic timberline delineation method based on a seeded region-growing segmentation technique and satellite-derived products of tree fractional cover. We applied our approach to the West Siberian Plain and Alaska treeline regions as defined by the Circumpolar Arctic Vegetation Map. The results demonstrate the effectiveness of the proposed method for the accurate delineation of the timberlines that spatially align well with very-high-resolution satellite images. Based on the delineated timberlines, we find regional-scale tree encroachment to be not as substantial as previously reported. The proposed approach can be applied to understanding climate-induced forest responses and inform forest management practices.

Circumpolar Arctic Vegetation Map↗

The Mexican Drought Atlas: Tree-Ring Reconstructions of the Soil Moisture Balance During the Late Pre-Hispanic, Colonial, and Modern Eras

Mexico has suffered a long history and prehistory of severe sustained drought. Drought over Mexico is modulated by ocean-atmospheric variability in the Atlantic and Pacific, raising the possibility for long-range seasonal climate forecasting, which could help mediate the economic and social impacts of future dry spells. The instrumental record of Mexican climate is very limited before 1920, but tree-ring chronologies developed from old-growth forests in Mexico can provide an excellent proxy representation of the spatial pattern and intensity of past moisture regimes useful for the analysis of climate dynamics and climate impacts. The Mexican Drought Atlas (MXDA) has been developed from an extensive network of 252 climate sensitive tree-ring chronologies in and near Mexico. The MXDA reconstructions extend from 1400 CE-2012 and were calibrated with the instrumental summer (JJA) self-calibrating Palmer Drought Severity Index (scPDSI) on a 0.5deg latitude/longitude grid extending over land areas from 14 to 34degN and 75-120degW using Ensemble Point-by-Point Regression (EPPR) for the 1944-1984 period. The grid point reconstructions were validated for the period 1920-1943 against instrumental gridded scPDSI values based on the fewer weather station observations available during that interval. The MXDA provides a new spatial perspective on the historical impacts of moisture extremes over Mexico during the past 600-years, including the Aztec Drought of One Rabbit in 1454, the drought of El Ano de Hambre in 1785-1786, and the drought that preceded the Mexican Revolution of 1909-1910. The El Nino/Southern Oscillation (ENSO) is the most important ocean-atmospheric forcing of moisture variability detected with the MXDA. In fact, the reconstructions suggest that the strongest central equatorial Pacific sea surface temperature (SST) teleconnection to the soil moisture balance over North America may reside in northern Mexico. This ENSO signal has stronger and more time-stable correlations than computed for either the Atlantic Multidecadal Oscillation or Pacific Decadal Oscillation. The extended Multivariate ENSO Index is most highly correlated with reconstructed scPDSI over northern Mexico, where warm events favor moist conditions during the winter, spring, and early summer. This ENSO teleconnection to northern Mexico has been strong over the past 150 years, but it has been comparatively weak and non-stationary in the MXDA over central and southern Mexico where eastern tropical Pacific and Caribbean/tropical Atlantic SSTs seem to be more important. The ENSO teleconnection to northern Mexico is weaker in the available instrumental PDSI, but analyses based on the millennium climate simulations with the Community Earth System Model suggest that the moisture balance during the winter, spring, and early summer over northern Mexico may indeed be particularly sensitive to ENSO forcing. Nationwide drought is predicted to become more common with anthropogenic climate change, but the MXDA reconstructions indicate that intense "All Mexico" droughts have been rare over the past 600 years and their frequency does not appear to have increased substantially in recent decades.

El Nino↗

Youngstown and Warren Disasters: Mapping Flood Susceptibility, Vulnerability, and Risk and Tree Canopy Coverage in Northern Ohio to Inform Stormwater Management and Flood Mitigation Efforts

Both pluvial and fluvial flooding events pose direct challenges on urban infrastructure and communities across the United States. Heavy rainfall events oversaturate the ground, overflow waterbodies, and overwhelm stormwater infrastructure. Vulnerable areas receive heavy damage from flooding events due to physical factors like increased impervious surfaces, poor stormwater systems, and limited greenspaces. These vulnerable neighborhoods are comprised of aging populations, minority communities, and lower income levels. Lack of data in these communities have made it difficult to implement policymaking and flood mitigation strategies. Using the Urban Flood Risk Mitigation model (InVEST) and the PlanetScope satellite constellation, the team visualized historical flooding and tree canopy coverage as a measure of flood susceptibility. The team also used the Arc-Malstrom model to provide further insight into where flooding accumulates via surface elevation depressions in the study area. To validate these models, the team explored the spatial variation of rainfall events using NASA’s Integrated Multi-satellite Retrievals for Global Precipitation Measurement (GPM IMERG). The resulting maps highlight areas surrounding the cities of Youngstown and Warren as being the most flood susceptible and socially vulnerable, while the city centers contain the lowest tree canopy coverage. The DEVELOP team collaborated with the Environmental Collaborative of Ohio (ECO) to create products for end users within the City of Warren’s Water Pollution Control Department, the Eastgate Regional Council of Governments and the Healthy Community Partnership of Mahoning Valley. These products help identify target areas for preventative flood mitigation measures as well as areas ideal for green infrastructure intervention.

InVEST Urban Flood Risk Mitigation Model↗

Quantum Distributed Algorithms for Approximate Steiner Trees and Directed Minimum Spanning Trees​

We present two algorithms in the Quantum CONGEST- CLIQUE model of distributed computation that succeed with high probability; one for producing an approximately optimal Steiner Tree, and one for producing an exact directed minimum spanning tree, each of which uses O ̃(n 1/4 ) rounds of communication and O ̃(n 9/4 ) messages, achieving a lower asymptotic round and message complexity than any known algorithms in the classical CONGEST-CLIQUE model. At a high level, we achieve these results by combining classical algorithms with fast quantum subroutines. Additionally, we characterize the constants and logarithmic factors involved in our algorithms, as well as related classical algorithms, revealing that advances are needed to render both practical.

quantum computing↗

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution

A central problem in biology is to understand how organisms evolve and adapt to their environment by acquiring variations in the observable characteristics or traits of species across the tree of life. With the growing availability of large-scale image repositories in biology and recent advances in generative modeling, there is an opportunity to accelerate the discovery of evolutionary traits automatically from images. Toward this goal, we introduce Phylo-Diffusion, a novel framework for conditioning diffusion models with phylogenetic knowledge represented in the form of HIERarchical Embeddings (HIER-Embeds). We also propose two new experiments for perturbing the embedding space of Phylo-Diffusion: trait masking and trait swapping, inspired by counterpart experiments of gene knockout and gene editing/swapping. Our work represents a novel methodological advance in generative modeling to structure the embedding space of diffusion models using tree-based knowledge. Our work also opens a new chapter of research in evolutionary biology by using generative models to visualize evolutionary changes directly from images. We empirically demonstrate the usefulness of Phylo-Diffusion in capturing meaningful trait variations for fishes and birds, revealing novel insights about the biological mechanisms of their evolution. (Model and code can be found at imageomics.github.io/phylo-diffusion)

Khurana, Mridul↗

Soil Particulate Organic Matter is Related to Ericoid Mycorrhizal Shrubs, not Ectomycorrhizal Trees, in a Temperate Forest

Mycorrhizal associations are key drivers of soil biogeochemistry, but previous studies have focused almost exclusively on ectomycorrhizal (EcM) and arbuscular mycorrhizal (AM) associations. Ericoid mycorrhizal (ErM) shrubs frequently occur in forest understories and are expanding in response to disturbance, but are rarely considered in biogeochemical frameworks. We investigated the relationships of understory ErM shrubs and overstory trees on carbon (C) and nitrogen (N) in soil organic matter fractions in a southern Appalachian temperate forest. We sampled the 0–10 cm mineral soil layer from 43 plots at the Coweeta Hydrologic Laboratory, across gradients in overstory EcM dominance and understory ErM shrub biomass. Soil C:N ratios increased with both increasing EcM dominance and increasing ErM shrub biomass. However, total particulate organic matter (POM) C, and the proportion of C and N held in POM increased with increasing ErM shrub biomass, but not with increasing EcM dominance. In contrast, mineral-associated organic matter (MAOM) C and N were negatively associated with EcM dominance, but were not related to ErM shrubs. Our findings suggest that ErM shrubs facilitate POM formation while AM trees promote MAOM formation. Because ErM shrub biomass represents a small fraction of total forest biomass, our work provides evidence that ErM shrubs have an outsized effect on soil organic matter, which advocates for their inclusion in mechanistic studies and biogeochemical frameworks.

Bonilla, Kayla A. [University of Georgia, Athens, ↗

Towards smarter green infrastructure: Fusing bark ecology and stemflow hydrodynamics on tree stems

A wide array of bark surfaces sheath wooded plants in rural and urban areas alike. Much work has examined the function and role of bark in different contexts and different environs, including urban areas, finding that it is rich in life and can play a role in the transfer of water and matter to the ground surface. Accordingly, this paper presents a first step to weld and fuse bark ecology and stemflow hydrodynamics. It is an effort to develop a physically-based understanding of the transport of water and matter (e.g., solutes, particulates, microorganisms) along tree stems using relevant equations to allow a more informed consideration of bark in green infrastructure initiatives. In particular, the hydrodynamical equations are based on the conservation of water mass, conservation of momentum, and conservation of scalar mass. These equations, coupled with contemplation of corticular life, underpin and substantiate bark’s unifying role as a modulator and cultivator. By elucidating the ‘black box’ of the tree stem and utilizing the formulations set forth in this paper, urban foresters and planners can develop green infrastructure to help advance ecosystem services and sustainability development goals (SDG), especially SDG 11 and SDG 15.

60 APPLIED LIFE SCIENCES↗

Litter production and foliar nutrient resorption in fast- and slow-growing tree species in the Central Amazon

Litterfall is crucial for forest maintenance, serving as a primary mechanism for nutrient return to the nutrient-poor soils of tropical forests. Foliar nutrient resorption likewise represents an important nutrient-conservation mechanism. Yet, little is known about how these processes vary between fast- and slow-growing species in post-logging areas of the Amazon forest. Here, the objective of this study was to quantify litterfall production and the resorption of foliar nutrients in fast-growing and slow-growing tree species of the Central Amazon, in a forest that was experimentally logged in 1987. The study was conducted from May 2022 to April 2023. Litterfall was collected biweekly using four collectors that were systematically distributed beneath the canopy of each monitored tree, totaling 72 collectors. Three fast-growing and three slow-growing species were selected, each with three replicates, totaling 18 monitored individuals. Species-specific samples of fresh (green) and senesced (litter) leaves were collected and analyzed for their nutrient content and resorption efficiency. Fast-growing species had a monthly leaf litter deposition of 13.53 ± 1.6 g m −2 month −1 , compared to 2.59 ± 0.4 g m −2 month −1 for slow-growing species. The average annual litter production across both functional types was 8.6 ± 2.6 Mg ha −1 year −1 . Nutrient inputs through litterfall were higher in fast-growing species for all elements, particularly nitrogen (N), with 21.92 ± 4.9 kg ha −1 year −1 . Phosphorus (P) and potassium (K) exhibited the highest foliar resorption. P resorption efficiency was 68.3 % in fast-growing species and 57.8 % in slow-growing species. For K, efficiencies were 59.0 % and 41.7 %, respectively. These results highlight the substantial role that fast-growing species play in restoring forest productivity in managed Amazon forests, both through higher litter deposition and nutrient fluxes, and through nutrient conserving-mechanisms such as foliar nutrient resorption.

Amazon forest↗

Decision-tree structures utilizing a phase-transition material

The rich internal physics due to competing electronic phases present in phase-transition materials such as VO2 offer the potential for compact building block design for emerging non-von Neumann computing technologies. Here, based on the relaxation dynamics of an insulator-metal phase transition, we demonstrate experimentally a decision-tree classifier embedded within a single volatile resistive switching device. The tree is constructed by the combination of the voltage pulse and relaxation time and can adapt to different tasks. We use machine learning to analyze the relaxation process, enabling a predictive voltage-relaxation time phase diagram for the electrical resistance state. Classification of the etiology of the chronic cough is presented as a proof-of-principle use case. Further, our approach can be generalized to broader classes of solid-state and solid-liquid interfacial systems that demonstrate a variety of phase relaxations.

36 MATERIALS SCIENCE↗

A Behavior Tree Approach for Battery-Aware Inspection of Large Structures Using Drones

Electric multi-rotor drones have been used to inspect several structures, including large buildings and dams. In these inspections, energy consumption is a concern. To prevent the drone from running out of battery, commercial drones usually come back to their home position when the battery level reaches a minimum threshold. The pilots then need to replace the battery and use their own experience to restart the inspection mission approximately from where it ended before the drone returned home. Instead of relying on the human operator, in this paper, we automate this process using behavior trees, which is an effective way to perform autonomous mission control and supervision. By integrating battery management strategies into a behavior tree framework, this paper demonstrates the drone’s adaptive and resilient decision-making when confronted with limited power constraints. We implemented our methodology using a commercial drone and tested the proposed ideas in a photogrammetry-based inspection task.

42 ENGINEERING↗

Neighborhood sociome factors and pediatric asthma exacerbations: Protective role of tree crown density and importance of pharmacy access in Chicago's south side

Abstract Background Pediatric asthma exacerbations remain a critical public health concern, particularly in historically underserved urban settings. Objective This study investigates sociome factors—the social context of disease—associated with asthma exacerbations among children living in Chicago's South Side, leveraging clinical and publicly available generalizable census tract‐level datasets from agencies including ChiVes, the City of Chicago Data Portal, EPA, Census Bureau, HUD, NOAA, and more. The aim is to uncover novel hypotheses for potential new interventions. Methods A generalized linear model assessed associations with the outcome of asthma exacerbations while accounting for clustering at the patient level. Predictors included all variables from the Sociome Data Commons, including social, environmental, behavioral, economic, housing, and school variables. Results Predictors of decreased risk included patient age (+4.8 years, −22%), tree crown density (+6% coverage, −17%), parks per acre (+0.41, −8%), and labor market engagement (+0.8 points, −9%). Conversely, predictors of increased risk included increased distance to the nearest pharmacy (+0.28 miles, +12%), limited English skills (+2.3%, +10%), higher inequality (+0.08 points, +8%), and visits in the Spring (+11%) and Fall (+20%). Conclusion The results suggest that tree crown density, a novel finding in the context of asthma exacerbations, may play a protective role. Limited access to health care facilities such as pharmacies continues to complicate care. Clinical Implications These findings provide hypotheses for future interventions for long‐standing asthma disparities.

Allergy↗

Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs

This package contains data, outputs, equations, and R scripts for analyses for manuscript entitled "Hot droughts in the Amazon: A window to a future hypertropical climate" by J. Chambers et al., in particular it contains statistical models and analyses for the INPA BIONTE tree mortality study. The Models folder contains details for all statistical models in PDF files. The Scripts folder contains the R scripts for Bayesian Hierarchical Models (two text files) and SEMs (one text file) are separate and reasonably annotated. All data associated with these scripts are in the data folder. The Data folder contains two of the three CSV files used for the analyses and are called by the R scripts. Two of them are part of published datasets (`BIONTE_mortality-rates.csv` from Lima et al. 2024, DOI:10.15486/ngt/1898910 and `SPEI.csv` from Pastorello et al. 2023 DOI:10.15486/ngt/1958257) and also provided in this package for convenience (please see the corresponding datasets for usage and citation terms). The third dataset (`BIONTE_gapfilled_wd.csv`) contains sensitive information and can be obtained by contacting the manuscript lead author. The Outputs folder contains the two output files that provide extra information about the analyses. The file `figuresFeb2025d.pdf` contains all the figures from the manuscript - captions are in the manuscript. The file `ChambersMS.pdf` contains primary results from Bayesian statistical models, regression analyses, and validation steps applied to the tree mortality data from the INPA experiments. The document includes visual summaries, model diagnostics, and leave-one-out (LOO) validation results. A breakdown of file contents can be found in the README file that is part of this package.

54 ENVIRONMENTAL SCIENCES↗