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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 217 records · Page 12
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Accessible, uniform protein property prediction with a scikit-learn based toolset AIDE

Summary Protein property prediction via machine learning with and without labeled data is becoming increasingly powerful, yet methods are disparate and capabilities vary widely over applications. The software presented here, “Artificial Intelligence Driven protein Estimation (AIDE)”, enables instantiating, optimizing, and testing many zero-shot and supervised property prediction methods for variants and variable length homologs in a single, reproducible notebook or script by defining a modular, standardized application programming interface (API), i.e. drop-in compatible with scikit-learn transformers and pipelines. Availability and implementation AIDE is an installable, importable python package inheriting from scikit-learn classes and API and is installable on Windows, Mac, and Linux. Many of the wrapped models internal to AIDE will be effectively inaccessible without a GPU, and some assume CUDA. The newest stable, tested version can be found at https://github.com/beckham-lab/aide_predict and a full user guide and API reference can be found at https://beckham-lab.github.io/aide_predict/. Static versions of both at the time of writing can be found on Zenodo.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Ubiquity and functional uniformity in CO2 concentrating mechanisms in multiple phyla of Bacteria is suggested by a diversity and prevalence of genes encoding candidate dissolved inorganic carbon transporters

ABSTRACT Autotrophic microorganisms catalyze the entry of dissolved inorganic carbon (DIC; = CO2 + HCO3− + CO32−) into the biological component of the global carbon cycle, despite dramatic differences in DIC abundance and composition in their sometimes extreme environments. “Cyanobacteria” are known to have CO2 concentrating mechanisms (CCMs) to facilitate growth under low CO2 conditions. These CCMs consist of carboxysomes, containing enzymes ribulose 1,5-bisphosphate oxygenase and carbonic anhydrase, partnered to DIC transporters. CCMs and their DIC transporters have been studied in a handful of other prokaryotes, but it was not known how common CCMs were beyond “Cyanobacteria”. Since it had previously been noted that genes encoding potential transporters were found neighboring carboxysome loci, α-carboxysome loci were gathered from bacterial genomes, and potential transporter genes neighboring these loci are described here. Members of transporter families whose members all transport DIC (CHC, MDT and Sbt) were common in these neighborhoods, as were members of the SulP transporter family, many of which transport DIC. 109 of 115 taxa with carboxysome loci have some form of DIC transporter encoded in their genomes, suggesting that CCMs consisting of carboxysomes and DIC transporters are widespread not only among “Cyanobacteria”, but also among members of “Proteobacteria” and “Actinobacteria”.

Scott, Kathleen M.↗
DOE OSTI2021

Response of extreme precipitation to uniform surface warming in quasi-global aquaplanet simulations at high resolution

Projections of precipitation extremes in simulations with global climate models are very uncertain in the tropics, in part because of the use of parameterizations of deep convection and model deficiencies in simulating convective organization. Here, we analyse precipitation extremes in high-resolution simulations that are run without a convective parameterization on a quasi-global aquaplanet. The frequency distributions of precipitation rates and precipitation cluster sizes in the tropics of a control simulation are similar to the observed distributions. In response to climate warming, 3 h precipitation extremes increase at rates of up to 9 % K - 1 in the tropics because of a combination of positive thermodynamic and dynamic contributions. The dynamic contribution at different latitudes is connected to the vertical structure of warming using a moist static stability. When the precipitation rates are first averaged to a daily timescale and coarse-grained to a typical global climate-model resolution prior to calculating the precipitation extremes, the response of the precipitation extremes to warming becomes more similar to what was found previously in coarse-resolution aquaplanet studies. However, the simulations studied here do not exhibit the high rates of increase of tropical precipitation extremes found in projections with some global climate models. This article is part of a discussion meeting issue ‘Intensification of short-duration rainfall extremes and implications for flash flood risks’.

Science & Technology - Other Topics↗
DOE OSTI2025

Assessing the impact of uniform rotation on the structure of neutron stars

Driven by recent laboratory experiments and astronomical observations, significant advances have deepened our understanding of neutron-star physics. NICER's Pulse Profile Modeling has refined our knowledge of neutron star masses and radii, while gravitational-wave detections have revealed key insights into the structure of neutron stars. Particularly relevant is the extraction of the tidal deformability by the LIGO-Virgo collaboration and the most recent determination of stellar radii by NICER, both suggesting a relatively soft equation of state (EOS) at intermediate densities. Additionally, measurements from the PREX collaboration and from pulsar timing suggest instead that the EOS is stiff in the vicinity of saturation density and at the highest densities accessible to date. But how stiff can the EOS be at these very high densities? Recent events featuring compact objects near the “lower mass gap” have raised questions about the existence of very massive neutron stars. Motivated by this finding and in light of new refinements to theoretical models, we explore the possibility that these massive objects may indeed be rapidly rotating neutron stars. Here, we explore how rotation affects both the maximum neutron star mass and their associated radii, and discuss the implications they may have on the equation of state.

Equations of state of nuclear matter↗
DOE OSTI2021

Penrose process for a charged black hole in a uniform magnetic field

Spinning black holes create electromagnetic storms when immersed in ambient magnetic fields, illuminating the otherwise epically dark terrain. In an electromagnetic extension of the Penrose process, tremendous energy can be extracted, boosting the energy of radiating particles far more efficiently than the mechanical Penrose process. We locate the regions from which energy can be mined and demonstrate explicitly that they are no longer restricted to the ergosphere. Here we also show that there can be toroidal regions that trap negative energy particles in orbit around the black hole. We find that the effective charge coupling between the black hole and the superradiant particles decreases as energy is extracted, much like the spin of a black hole decreases in the mechanical analogue. While the effective coupling decreases, the actual charge of the black hole increases in magnitude reaching the energetically-favored Wald value, at which point energy extraction is impeded. We demonstrate the array of orbits for products from the electromagnetic Penrose process.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Uniform-density Bose-Einstein condensates of the Gross-Pitaevskii equation found by solving the inverse problem for the confining potential

Here, in this work, we consider a “reverse-engineering” approach to construct confining potentials that support exact, constant density kovaton solutions to the classical Gross-Pitaevskii equation (GPE) also known as the nonlinear Schr¨odinger equation (NLSE). In the one-dimensional case, the exact solution is the sum of stationary kink and anti-kink solutions, i.e. a kovaton, and in the overlapping region, the density is constant. In higher dimensions, the exact solutions are generalizations of this wave function. In the absence of self-interactions, the confining potential is similar to a smoothed out finite square well with minima also at the edges. When self-interactions are added, a term proportional to ±gψ*ψ gets added to the confining potential and ±gM, where M is the norm, gets added to the total energy. In the realm of stability analysis, we find (linearly) stable solutions in the case with repulsive self-interactions which also are stable to self-similar deformations. For attractive interactions, however, the minima at the edges of the potential get deeper and a barrier in the center forms as we increase the norm. This leads to instabilities at a critical value of M (related to the number of particles in the BEC). Comparing the stability criteria from Derrick’s theorem and Bogoliubov-de Gennes analysis stability results, we find that both predict stability for repulsive self-interactions and instability at a critical mass M for attractive interactions. However, the numerical analysis gives a much lower critical mass. The numerical analysis shows further that the initial instabilities violate the symmetry x → -x assumed by Derrick’s theorem.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

High Efficiency Uniform Wakefield Acceleration of a Positron Beam Using Stable Asymmetric Mode in a Hollow Channel Plasma

Plasma wakefield acceleration in the blowout regime is particularly promising for high-energy acceleration of electron beams because of its potential to simultaneously provide large acceleration gradients and high energy transfer efficiency while maintaining excellent beam quality. However, no equivalent regime for positron acceleration in plasma wakes has been discovered to date. We show that after a short propagation distance, an asymmetric electron beam drives a stable wakefield in a hollow plasma channel that can be both accelerating and focusing for a positron beam. A high charge positron bunch placed at a suitable distance behind the drive bunch can beam-load or flatten the longitudinal wakefield and enhance the transverse focusing force, leading to high efficiency and narrow energy spread acceleration of the positrons. Three-dimensional quasistatic particle-in-cell simulations show that an over 30% energy extraction efficiency from the wake to the positrons and a 1% level energy spread can be simultaneously obtained. Further optimization is feasible.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2026

Single-shot hard X-ray spectrometer with uniform spatial and spectral response

We demonstrate a single-shot hard X-ray spectrometer based on small-angle scattering from glassy carbon that is insensitive to XFEL beam-dependent spatial and spectral variations. Comparison with established X-ray Thomson scattering diagnostics using stochastic correlation X-ray spectroscopy demonstrates full-bandwidth coverage with meV-scale spectral resolution, enabling reliable single-shot spectroscopic measurements.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

Impact of Random Spatial Fluctuation in Non-Uniform Crystalline Phases on the Device Variation of Ferroelectric FET

In this work, a comprehensive study of random spatial fluctuation of the ferroelectric (FE) phase and dielectric (DE) phase in FeFETs is conducted to understand its impact on device variation. It is found that: i) there exists a certain DE percentage threshold that below which the increase of the DE phase does not significantly impact the device memory window and variation and only above which evident device degradation can be observed; ii) increasing the DE phase increases the variation in the memory window and the coercive field distribution further exacerbates the variation, hence degrading the sensing margin; iii) decreasing the number of grains degrades the device variation, which calls for further grain size engineering for variation suppression.

42 ENGINEERING↗
DOE OSTI2023

Cellulose assembles into helical bundles of uniform handedness in cell walls with abnormal pectin composition

Plant cells and organs grow into a remarkable diversity of shapes, as directed by cell walls composed primarily of polysaccharides such as cellulose and multiple structurally distinct pectins. The properties of the cell wall that allow for precise control of morphogenesis are distinct from those of the individual polysaccharide components. For example, cellulose, the primary determinant of cell morphology, is a chiral macromolecule that can self-assemble in vitro into larger-scale structures of consistent chirality, and yet most plant cells do not display consistent chirality in their growth. One interesting exception is the Arabidopsis thaliana rhm1 mutant, which has decreased levels of the pectin rhamnogalacturonan-I and causes conical petal epidermal cells to grow with a left-handed helical twist. Here, we show that in rhm1 the cellulose is bundled into large macrofibrils, unlike the evenly distributed microfibrils of the wild type. This cellulose bundling becomes increasingly severe over time, consistent with cellulose being synthesized normally and then self-associating into macrofibrils. We also show that in the wild type, cellulose is oriented transversely, whereas in rhm1 mutants, the cellulose forms right-handed helices that can account for the helical morphology of the petal cells. Furthermore, our results indicate that when the composition of pectin is altered, cellulose can form cellular-scale chiral structures in vivo, analogous to the helicoids formed in vitro by cellulose nano-crystals. We propose that an important emergent property of the interplay between rhamnogalacturonan-I and cellulose is to permit the assembly of nonbundled cellulose structures, providing plants flexibility to orient cellulose and direct morphogenesis.

59 BASIC BIOLOGICAL SCIENCES↗