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At least 235 records · Page 13

Marginal protein stability drives subcellular proteome isoelectric point

There exists a positive correlation between the pH of subcellular compartments and the median isoelectric point (pI) for the associated proteomes. Proteins in the human lysosome—a highly acidic compartment in the cell—have a median pI of ∼6.5, whereas proteins in the more basic mitochondria have a median pI of ∼8.0. Proposed mechanisms reflect potential adaptations to pH. For example, enzyme active site general acid/base residue pKs are likely evolved to match environmental pH. However, such effects would be limited to a few residues on specific proteins, and might not affect the proteome at large. A protein model that considers residue burial upon folding recapitulates the correlation between proteome pI and environmental pH. This correlation can be fully described by a neutral evolution process; no functional selection is included in the model. Proteins in acidic environments incur a lower energetic penalty for burying acidic residues than basic residues, resulting in a net accumulation of acidic residues in the protein core. The inverse is true under alkaline conditions. The pI distributions of subcellular proteomes are likely not a direct result of functional adaptations to pH, but a molecular spandrel stemming from marginal stability.

Kaiser Loell↗

Markov Chain Monte Carlo Bayesian Learning for Neural Networks

Conventional training methods for neural networks involve starting al a random location in the solution space of the network weights, navigating an error hyper surface to reach a minimum, and sometime stochastic based techniques (e.g., genetic algorithms) to avoid entrapment in a local minimum. It is further typically necessary to preprocess the data (e.g., normalization) to keep the training algorithm on course. Conversely, Bayesian based learning is an epistemological approach concerned with formally updating the plausibility of competing candidate hypotheses thereby obtaining a posterior distribution for the network weights conditioned on the available data and a prior distribution. In this paper, we developed a powerful methodology for estimating the full residual uncertainty in network weights and therefore network predictions by using a modified Jeffery's prior combined with a Metropolis Markov Chain Monte Carlo method.

Goodrich, Michael S.↗

Validation of a Manually Oscillating Chair for In-The-Field Assessment of Dynamic Visual Acuity on Crewmembers Within Hours of Returning From Long-Duration Spaceflight

Long-duration spaceflight results in sensorimotor adaptations, which cause functional deficits during gravitational transitions, such as landing on a planetary surface after long-duration microgravity exposure. Both the vestibular system and the central nervous system are affected by gravitational transitions. These systems are responsible for coordinating head and eye movements via the vestibulo-ocular reflex (VOR) and go through an adaptation period upon exposure to microgravity. Consequently, they must also re-adapt to Earth's gravitational environment upon landing. This re-adaptation causes decrements in gaze control and dynamic visual acuity, with crewmembers reporting oscillopsia and blurred vision caused by retinal slip, or the inability to keep an image focused on their retina. This is thought to drive motion sickness symptoms experienced by most crewmembers following landing. Retinal slip can be estimated by dynamic visual acuity (DVA); visual acuity while in motion. Previously, DVA has been assessed in the laboratory where subjects walked at 6.4 km/hr on a motorized treadmill. Using this method, Peters et al. (2011) found that DVA is worsened in astronauts by an average of 0.75 eye-chart lines one day after landing. However, it is believed that re-adaptation occurs quickly and that DVA might be worse immediately upon re-exposure to a gravitational environment. Since many crewmembers are unable to walk safely upon landing, it was necessary to develop a method for replicating the vertical head movements associated with walking. In addition, the use of a chair to imitate the head displacement caused by walking isolates eye-head interactions without allowing for trunk and lower-body compensation, as seen with treadmill walking (Mulavara & Bloomberg 2003). Therefore, a modality for assessing DVA in the field within a few hours of landing was developed. In this study, we validated the ability of a manually operated oscillating chair to reproduce the oscillatory frequency of walking on a treadmill. Healthy non-astronaut subjects (n=14) participated in one test session and completed three static (seated) and three dynamic (walking/oscillated) visual acuity tests. DVA was assessed using a motorized treadmill, an automated oscillating chair, and a manually operated chair, both developed in the Neuroscience Laboratory at JSC. The automated chair was motor-driven and set to oscillate vertically at 2 Hz with a vertical displacement of +/- 5 cm to simulate vertical translation while walking. The manually operated chair was oscillated vertically by a test operator to the beat of a metronome at 120 beats/min (2 Hz) and a vertical displacement of approximately +/- 5 cm. As the subject was oscillated, they were asked to discern the direction gap of Landolt-C optotypes of varying sizes and verbally reported the direction while an operator recorded their response using a gamepad. Subjects were outfitted with accelerometers (sampling rate = 128 Hz) on their head, trunk and lumbar spine. A fast Fourier transform was performed on the vertical trunk acceleration to compare the peak and spread of the distribution of oscillation frequencies for each oscillating condition. The spread of the frequency distribution for the manual chair was not significantly different from either the treadmill or the automated chair. However, all three conditions had similar non-zero standard error values, suggesting a variance in head movement frequency which may affect DVA. The average oscillation frequency of the manual chair (1.85 Hz) was significantly different (α=0.05) from that of treadmill walking (2.24 Hz), but not significantly different from that of the automated chair (1.85 Hz) and all three conditions had small standard errors (SEM = 0.04, 0.06, and 0.08 Hz for manual, treadmill, and automated respectively). This implies that both chairs oscillate at a frequency below that of treadmill walking, but are comparable to each other and reproducible across sessions. Additionally, DVA scores did not vary significantly across conditions. The smaller spread values of the oscillating chairs' frequencies indicated mitigation of variation induced by locomotor strategies, which enables better examination of the issue of VOR adaptation. Furthermore, due to the deconditioned state of crewmembers in the initial hours after landing, it is easier to transport a manual bouncing chair into the field and safer to perform a vision test while seated in a chair versus walking on a treadmill. Therefore, the manually oscillating chair has been deemed to meet and exceed the DVA testing capabilities previously obtained by treadmill walking.

Kreutzberg, G. A.↗

Two-layer convective heating prediction procedures and sensitivities for blunt body reentry vehicles

This paper provides a description of procedures typically used to predict convective heating rates to hypersonic reentry vehicles using the two-layer method. These procedures were used to compute the pitch-plane heating distributions to the Apollo geometry for a wind tunnel test case and for three flight cases. Both simple engineering methods and coupled inviscid/boundary layer solutions were used to predict the heating rates. The sensitivity of the heating results in the choice of metrics, pressure distributions, boundary layer edge conditions, and wall catalycity used in the heating analysis were evaluated. Streamline metrics, pressure distributions, and boundary layer edge properties were defined from perfect gas (wind tunnel case) and chemical equilibrium and nonequilibrium (flight cases) inviscid flow-field solutions. The results of this study indicated that the use of CFD-derived metrics and pressures provided better predictions of heating when compared to wind tunnel test data. The study also showed that modeling entropy layer swallowing and ionization had little effect on the heating predictions.

Bouslog, Stanley A.↗

Theoretical Study of Natural Convection Flows in Closed-End Cylindrical Vessels Final Report

This study is concerned with the analytical solutions of natural convection flows in closed-end cylindrical vessels to obtain exact solutions of temperature and velocity distribution in the laminar flow region under steady state condition. The temperature and velocity distributions, in general power series of displacements, are substituted into the three basic equations of continuity, momentum and energy. The relationships between coefficients of all powers are obtained through initial and boundary conditions and recurrence formulae. For constant wall temperature conditions the general solution of temperature and velocity may be expressed as a function of displacement, geometry ratio and Rayleigh number. Prandtl number does not enter as an independent parameter.

Convective flow↗

Flow characteristics of various swirl-can module designs

Flow measurements were performed on each of six swirl-can combustor module designs under simulated combustor operating conditions to find the design which exhibited a small recirculation zone, intense air mixing, and good fuel distribution in its wake. Conditions that are favorable for producing low oxides of nitrogen emissions and high combustion efficiency were investigated. The recirculation zone, the turbulence intensity and the fuel distribution pattern are obtained in the wake region of the center module of a three module array. The most promising swirl-can module design incorporates two air swirlers which discharge air in opposite directions (contraswirl), mixes the fuel and air upstream of the inner swirler, and has a flow area blockage of 64.3% for the three module array.

Mularz, E. J.↗

The role of hydrogen thermalization in shaping the Lyman-alpha coma

Two interrelated aspects of the thermalization of cometary hydrogen were addressed using a three-dimensional Monte Carlo particle trajectory model: photochemical heating of the coma and the velocity distribution of cometary hydrogen leaving the inner coma that produces the extended Lyman-alpha coma. Observed cometary conditions were examined, ranging from productive comets like Kohoutek at very small heliocentric distances to intrinsically small comets like Giacobini-Zinner at 1 AU. The collisional decoupling of hydrogen yields bulk flow speeds and gas temperatures which are smaller than generally predicted in hydrodynamic models. By properly including these conditions the hydrogen velocity distribution required to produce the observed Lyman-alpha coma can be derived naturally. The two-dimensional morphology of the H coma is diagnostic of the physical conditions in the inner coma.

Combi, Michael R.↗

NASA Numerical and Experimental Evaluation of UTRC Low Emissions Injector

Computational and experimental analyses of a PICS-Pilot-In-Can-Swirler technology injector, developed by United Technologies Research Center (UTRC) are presented. NASA has defined technology targets for near term (called "N+1", circa 2015), midterm ("N+2", circa 2020) and far term ("N+3", circa 2030) that specify realistic emissions and fuel efficiency goals for commercial aircraft. This injector has potential for application in an engine to meet the Pratt & Whitney N+3 supersonic cycle goals, or the subsonic N+2 engine cycle goals. Experimental methods were employed to investigate supersonic cruise points as well as select points of the subsonic cycle engine; cruise, approach, and idle with a slightly elevated inlet pressure. Experiments at NASA employed gas analysis and a suite of laser-based measurement techniques to characterize the combustor flow downstream from the PICS dump plane. Optical diagnostics employed for this work included Planar Laser-Induced Fluorescence of fuel for injector spray pattern and Spontaneous Raman Spectroscopy for relative species concentration of fuel and CO2. The work reported here used unheated (liquid) Jet-A fuel for all fuel circuits and cycle conditions. The initial tests performed by UTRC used vaporized Jet-A to simulate the expected supersonic cruise condition, which anticipated using fuel as a heat sink. Using the National Combustion Code a PICS-based combustor was modeled with liquid fuel at the supersonic cruise condition. All CFD models used a cubic non-linear k-epsilon turbulence wall functions model, and a semi-detailed Jet-A kinetic mechanism based on a surrogate fuel mixture. Two initial spray droplet size distribution and spray cone conditions were used: (1) an initial condition (Lefebvre) with an assumed Rosin-Rammler distribution, and 7 degree Solid Spray Cone; and (2) the Boundary Layer Stripping (BLS) primary atomization model giving the spray size distribution and directional properties. Contour and line plots are shown in comparison with experimental data (where this data is available) for flow velocities, fuel, and temperature distribution. The CFD results are consistent with experimental observations for fuel distribution and vaporization. Analysis of gas sample results, using a previously-developed NASA NOx correlation, indicates that for sea-level takeoff, the PICS configuration is predicted to deliver an EINOx value of about three for the targeted supersonic aircraft. Emissions results at supersonic cruise conditions show potential for meeting the NASA goals with liquid fuel.

Hicks, Yolanda R.↗

NASA Numerical and Experimental Evaluation of UTRC Low Emissions Injector

Computational and experimental analyses of a PICS-Pilot-In-Can-Swirler technology injector, developed by United Technologies Research Center (UTRC) are presented. NASA has defined technology targets for near term (called "N+1", circa 2015), midterm ("N+2", circa 2020) and far term ("N+3", circa 2030) that specify realistic emissions and fuel efficiency goals for commercial aircraft. This injector has potential for application in an engine to meet the Pratt & Whitney N+3 supersonic cycle goals, or the subsonic N+2 engine cycle goals. Experimental methods were employed to investigate supersonic cruise points as well as select points of the subsonic cycle engine; cruise, approach, and idle with a slightly elevated inlet pressure. Experiments at NASA employed gas analysis and a suite of laser-based measurement techniques to characterize the combustor flow downstream from the PICS dump plane. Optical diagnostics employed for this work included Planar Laser-Induced Fluorescence of fuel for injector spray pattern and Spontaneous Raman Spectroscopy for relative species concentration of fuel and CO2. The work reported here used unheated (liquid) Jet-A fuel for all fuel circuits and cycle conditions. The initial tests performed by UTRC used vaporized Jet-A to simulate the expected supersonic cruise condition, which anticipated using fuel as a heat sink. Using the National Combustion Code a PICS-based combustor was modeled with liquid fuel at the supersonic cruise condition. All CFD models used a cubic non-linear k-epsilon turbulence wall functions model, and a semi-detailed Jet-A kinetic mechanism based on a surrogate fuel mixture. Two initial spray droplet size distribution and spray cone conditions were used: 1) an initial condition (Lefebvre) with an assumed Rosin-Rammler distribution, and 7 degree Solid Spray Cone; and 2) the Boundary Layer Stripping (BLS) primary atomization model giving the spray size distribution and directional properties. Contour and line plots are shown in comparison with experimental data (where this data is available) for flow velocities, fuel, and temperature distribution. The CFD results are consistent with experimental observations for fuel distribution and vaporization. Analysis of gas sample results, using a previously-developed NASA NOx correlation, indicates that for sea-level takeoff, the PICS configuration is predicted to deliver an EINOx value of about 3 for the targeted supersonic aircraft. Emissions results at supersonic cruise conditions show potential for meeting the NASA goals with liquid fuel.

Hicks, Yolanda R.↗

A fast viscous correction method for full-potential transonic wing analysis

An analysis of the transonic flowfield around a three-dimensional wing is carried out using a strip method. Attention is given to the boundary layer growth in the streamwise direction. A viscous correction technique is defined for the TWING code for solving the full potential equations. A viscous ramp at the base of a shock is superimposed on the boundary layer displacement thickness generated by an integral boundary layer method. A relationship is then obtained between the effective displacement thickness and a vertical component of the surface velocity, a transpirational boundary condition. The viscous correction is found to be unnecessary in weak shock conditions but gives a better shock position and pressure distribution in a strong shock condition when compared with data from an ONERA M6 airfoil and the Hinson and Burdges (1980) Wing A.

Lee, S. C.↗

Particle size and velocity measurement in flames by laser anemometer

Simultaneous droplet size and velocity measurements by a particle counting Laser Doppler Anemometer (LDA) in kerosene fuel sprays under burning and non-burning conditions are presented. Particle sizes are derived from pulse height analysis of the mean LDA signals and velocities are simultaneously determined by measuring Doppler shift frequencies. The measurements show that droplet velocity is a function of droplet diameter for burning and non-burning conditions, and spatially averaged size distributions are derived from velocity data. A comparison of results obtained under burning and non-burning conditions show changes in size distribution due to preferential vaporization of small droplets, acceleration due to thermal expansion of gases, and corresponding changes in droplet momentum.

Chigier, N. A.↗

Numerical analysis of flow through oscillating cascade sections

The design of turbomachinery blades requires the prevention of flutter for all operating conditions. However, flow field predictions used for aeroelastic analysis are not well understood for all flow regimes. The present research focuses on numerical solutions of the Euler and Navier-Stokes equations using an ADI procedure to model two-dimensional, transonic flow through oscillating cascades. The model prescribes harmonic pitching motions for the blade sections for both zero and nonzero interblade phase angles. The code introduces the use of a deforming grid technique for convenient specification of the periodic boundary conditions. Approximate nonreflecting boundary conditions were coded for the inlet and exit boundary conditions. Sample unsteady solutions were performed for an oscillating cascade and compared to experimental data. Also, test cases were run for a flat plate cascade to compare with the unsteady, small-perturbation, subsonic analyis. The predictions for oscillating cascades with nonzero interblade phase angle cases, which were near a resonant condition, differ from the experiment and theory. The zero degree interblade phase angle cases, which were near a resonant condition, differ from the experiment and theory. Studies on reflecting versus nonreflecting inlet and exit boundary conditions show that the treatment of the boundary can have a significant effect on the first harmonic, unsteady pressure distributions for certain flow conditions.

Huff, Dennis L.↗

Numerical analysis of flow through oscillating cascade sections

The design of turbomachinery blades requires the prevention of flutter for all operating conditions. However, flow field predictions used for aeroelastic analysis are not well understood for all flow regimes. The present research focuses on numerical solutions of the Euler and Navier-Stokes equations using an ADI procedure to model two-dimensional, transonic flow through oscillating cascades. The model prescribes harmonic pitching motions for the blade sections for both zero and nonzero interblade phase angles. The code introduces the use of a deforming grid technique for convenient specification of the perioidic boundary conditions. Approximate nonreflecting boundary conditons were coded for the inlet and exit boundary conditions. Sample unsteady solutions were performed for an oscillating cascade and compared to experimental data. Also, test cases were run for a flat plate cascade to compare with the unsteady, small-perturbation, subsonic analysis. The predictions for oscillating cascades with nonzero interblade phase angle cases, which were near a resonant condition, differ from the experiment and theory. The zero degree interblade phase angle cases, which were near a resonant condition, differ from the experiment and theory. Studies on reflecting versus nonreflecting inlet and exit boundary conditions show that the treatment of the boundary can have a significant effect on the first harmonic, unsteady pressure distribution for certain flow conditions.

Huff, Dennis L.↗

Numerical analysis of flow through oscillating cascade sections

The design of turbomachinery blades requires the prevention of flutter for all operating conditions. However, flow field predictions used for aeroelastic analysis are not well understood for all flow regimes. The present research focuses on numerical solutions of the Euler and Navier-Stokes equations using an ADI procedure to model two-dimensional, transonic flow through oscillating cascades. The model prescribes harmonic pitching motions for the blade sections for both zero and non-zero inter-blade phase angles. The code introduces the use of a deforming grid technique for convenient specification of the periodic boundary conditions. Approximate nonreflecting boundary conditions have been coded for the inlet and exit boundary conditions. Sample unsteady solutions have been performed for an oscillating cascade and compared to experimental data. Also, test cases were fun for a flat plate cascade to compare with an unsteady, small-perturbation, subsonic analysis. The predictions for oscillating cascades with non-zero inter-blade phase angles are in good agreement with experimental data and small-perturbation theory. The zero degree inter-blade phase angle cases, which were near a resonant condition, differ from the experiment and theory. Studies on reflecting versus non-reflecting inlet and exit boundary conditions show that the treatment of the boundary can have a significant effect on the first harmonic, unsteady pressure distributions for certain flow conditions. This code is expected to be used as a tool for reviewing simpler models that do not include the full nonlinear aerodynamics or as a final check for designs against flutter in turbomachinery.

Huff, Dennis L.↗

Characteristics of Coupled Nongray Radiating Gas Flows with Ablation Product Effects About Blunt Bodies During Planetary Entries

A computational method was developed for the fully-coupled solution of nongray, radiating gas flows with ablation product effects about blunt bodies during planetary entries. The treatment of radiation accounts for molecular band, continuum, and atomic line transitions with a detailed frequency dependence of the absorption coefficient. The ablation of the entry body was solved as part of the solution for a steady-state ablation process. The method was applied by results at typical conditions during entry to Venus. The radiative heating rates along the downstream region of the body can exceed the stagnation point value. The radiative heating to the body is attenuated in the boundary layer at the downstream region of the body and at the stagnation point of the body. A study of the radiation, inviscid flow about spherically capped, conical bodies during planetary entries shows that the nondimensional, radiative heating distributions are nonsimilar with entry conditions. Caution should be exercised in attempting to extrapolate results from known distributions to other entry conditions for which solutions have not yet been obtained.

Sutton, K.↗

Modeling a beaver population on the Prescott Peninsula, Massachusetts: Feasibility of LANDSAT as an input

A preliminary dynamic model of beaver spatial distribution and population growth was developed. The feasibility of locating beaver ponds on LANDSAT digital tapes, and of using this information to provide initial conditions of beaver spatial distribution for the model, and to validate model predictions is discussed. The techniques used to identify beaver ponds on LANDSAT are described.

Finn, J. T.↗