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At least 235 records · Page 13

Landau-Pomeranchuk-Midgal effect and charm production in p p collisions at energies available at the CERN Large Hadron Collider using the parton cascade model

We study the impact of the Landau-Pomeranchuk-Midgal (LPM) effect on the dynamics of parton interactions in proton-proton collisions at energies available at the CERN Large Hadron Collider. For our investigation we utilize a microscopic kinetic theory based on the Boltzmann equation. The calculation traces the space-time evolution of the cascading partons interacting via semihard pQCD scatterings and fragmentations. We focus on the impact of the LPM effect on the production of charm quarks, since their production is exclusively governed by processes well described in our kinetic theory. Furthermore, the LPM effect is found to become more prominent as the collision energy rises and at central rapidities, and may significantly affect the model's predicted charm distributions at low momenta.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Fire as a fundamental ecological process: Research advances and frontiers

Fire is a powerful ecological and evolutionary force that regulates organismal traits, population sizes, species interactions, community composition, carbon and nutrient cycling and ecosystem function. It also presents a rapidly growing societal challenge, due to both increasingly destructive wildfires and fire exclusion in fire–dependent ecosystems. As an ecological process, fire integrates complex feedbacks among biological, social and geophysical processes, requiring coordination across several fields and scales of study. Here, we describe the diversity of ways in which fire operates as a fundamental ecological and evolutionary process on Earth. We explore research priorities in six categories of fire ecology: (a) characteristics of fire regimes, (b) changing fire regimes, (c) fire effects on above–ground ecology, (d) fire effects on below–ground ecology, (e) fire behaviour and (f) fire ecology modelling. We identify three emergent themes: the need to study fire across temporal scales, to assess the mechanisms underlying a variety of ecological feedbacks involving fire and to improve representation of fire in a range of modelling contexts. As fire regimes and our relationships with fire continue to change, prioritizing these research areas will facilitate understanding of the ecological causes and consequences of future fires and rethinking fire management alternatives.

54 ENVIRONMENTAL SCIENCES↗

Weakly Ordered Nanostructured Silver Disilicate and Its Colloidal Solutions: Preparation and Properties

It was shown that the interaction of silver cations in alkaline aqueous solutions with various kinds of silicates, regardless of their chemical and aggregation state, leads to the formation of an exclusively disilicate form of silver salt. We develop procedures for synthesis of nanostructured weakly ordered nonstoichiometric silver disilicate Ag{sub 6 –x}H{sub x}Si{sub 2}O{sub 7} capable of forming aqueous colloids. We study the micellular structure of colloidal particles in these solutions and demonstrate that permeability of silicic acid layers enveloping nanosized salt cores of these micelles depends on pH. Colloidal silver disilicate is found to exhibit a high catalytic activity in photoinduced oxidation of a broad spectrum of different compounds, which is demonstrated for compounds stable in aqueous solutions such as some organic dies and ferrocyanide complex ([Fe(CN){sub 6}{sup −4}).

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Optical potential uncertainties on exclusive tens-of-MeV Ar cross sections

Large liquid argon time projection chamber (LArTPC) neutrino detectors, such as those planned for the Deep Underground Neutrino Experiment (DUNE), show considerable promise as a platform for next-generation measurements of supernova neutrinos. Thanks to the neutron excess in $^{40}$Ar as well as the detailed tracking possible with LArTPCs, these detectors are expected to be uniquely capable of measuring supernova electron neutrinos with high statistics and minimal backgrounds. However, these technological advantages come at the price of complexities in data interpretation; reconstruction of the incident energies of supernova neutrinos in a future LArTPC-based analysis will be subject to a variety of systematic uncertainties related to nuclear interaction modeling. In this talk, we present a study of a subset of these uncertainties as implemented in the MARLEY event generator used by DUNE and other LArTPC neutrino experiments. Variations to the optical potential used in the MARLEY nuclear de-excitation model are applied to the calculation of exclusive tens-of-MeV neutrino-nucleus cross sections for the first time, and the impact on observables of interest for supernova neutrino detection is examined. We also discuss prospects for quantifying other sources of uncertainty on the MARLEY neutrino interaction model.

El-Haj, Luca Abu↗

Leptonic scalars at the LHC

We explore the collider prospects of neutrino non-standard interaction with a Standard Model (SM) gauge-singlet leptonic scalar ϕ carrying two units of lepton-number-charge. These leptonic scalars are forbidden from interacting with the SM fermions at the renormalizable level and, if one allows for higher-dimensional operators, couple predominantly to SM neutrinos. For masses at or below the electroweak scale, ϕ decays exclusively into neutrinos. Its characteristic production signature at hadron collider experiments like the LHC would be via the vector boson fusion process and leads to same-sign dileptons, two forward jets in opposite hemispheres, and missing transverse energy, i.e., $$ pp\to {\mathrm{\ell}}_{\alpha}^{\pm }{\mathrm{\ell}}_{\beta}^{\pm } jj+{E}_T^{\mathrm{miss}}\left(\alpha, \beta =e,\mu, \tau \right) $$ pp → ℓ α ± ℓ β ± jj + E T miss α β = e μ τ . Exploiting the final states of electrons and muons, we estimate, for the first time, the sensitivity of the LHC to these lepton-number-charged scalars. We show that the LHC sensitivity is largely complementary to that of low-energy precision measurements of the decays of charged leptons, charged mesons, W , Z and the SM Higgs boson, as well as the neutrino beam experiments like MINOS, and searches for neutrino self-interactions at IceCube and in cosmological observations. For ϕ mass larger than roughly 10 GeV, our projected LHC sensitivity would surpass all existing bounds.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Latent Dirichlet Allocation modeling of environmental microbiomes

Interactions between stressed organisms and their microbiome environments may provide new routes for understanding and controlling biological systems. However, microbiomes are a form of high-dimensional data, with thousands of taxa present in any given sample, which makes untangling the interaction between an organism and its microbial environment a challenge. Here we apply Latent Dirichlet Allocation (LDA), a technique for language modeling, which decomposes the microbial communities into a set of topics (non-mutually-exclusive sub-communities) that compactly represent the distribution of full communities. LDA provides a lens into the microbiome at broad and fine-grained taxonomic levels, which we show on two datasets. In the first dataset, from the literature, we show how LDA topics succinctly recapitulate many results from a previous study on diseased coral species. We then apply LDA to a new dataset of maize soil microbiomes under drought, and find a large number of significant associations between the microbiome topics and plant traits as well as associations between the microbiome and the experimental factors, e.g. watering level. This yields new information on the plant-microbial interactions in maize and shows that LDA technique is useful for studying the coupling between microbiomes and stressed organisms.

59 BASIC BIOLOGICAL SCIENCES↗

Double-differential inclusive charged-current ν μ cross sections on hydrocarbon in MINERvA at ( E ν ) ~ 3.5 GeV

MINERvA reports inclusive charged-current cross sections for muon neutrinos on hydrocarbon in the NuMI beamline. We measured the double-differential cross section in terms of the longitudinal and transverse muon momenta, as well as the single-differential cross sections in those variables. The data used in this analysis correspond to an exposure of 3.34×10 20 protons on target with a peak neutrino energy of approximately 3.5 GeV. Measurements are compared to the GENIE, NuWro and GiBUU neutrino cross-section predictions, as well as a version of GENIE modified to produce better agreement with prior exclusive MINERvA measurements. None of the models or variants were able to successfully reproduce the data across the entire phase space, which includes areas dominated by each interaction channel.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Partonic transverse distributions of up and down quarks

The quark-gluon dynamics manifests itself in a set of non-perturbative functions describing all possible spin-spin and spin-orbit correlations. The Transverse Momentum Dependent parton distributions (TMDs) and Generalized Parton Distributions (GPDs) carry information not only on the longitudinal but also on the transverse momentum and position of partons, providing rich and direct information on the orbital motion of quarks. Single and Dihadron semi-inclusive and hard exclusive production, both in current and target fragmentation regions, provide a variety of spin and azimuthal angle dependent observables, sensitive to the dynamics of quark-gluon interactions. Studies of the 3D PDFs are currently driving the upgrades of several existing facilities (JLab, COMPASS and RHIC), and the design and construction of new facilities worldwide (EIC, FAIR, and JPARC). In this talk, we present an overview of the current status and some future measurements of the orbital structure of nucleons at Jefferson Lab.

Avagyan, Harutyun↗

PilN binding modulates the structure and binding partners of the Pseudomonas aeruginosa type IVa pilus protein PilM

Pseudomonas aeruginosa is an opportunistic bacterial pathogen that expresses type IVa pili. The pilus assembly system, which promotes surface-associated twitching motility and virulence, is composed of inner and outer membrane subcomplexes, connected by an alignment subcomplex composed of PilMNOP. PilM binds to the N terminus of PilN, and we hypothesize that this interaction causes functionally significant structural changes in PilM. To characterize this interaction, we determined the crystal structures of PilM and a PilM chimera where PilM was fused to the first 12 residues of PilN (PilM·PilN(1–12)). Structural analysis, multiangle light scattering coupled with size exclusion chromatography, and bacterial two-hybrid data revealed that PilM forms dimers mediated by the binding of a novel conserved motif in the N terminus of PilM, and binding PilN abrogates this binding interface, resulting in PilM monomerization. Structural comparison of PilM with PilM·PilN(1–12) revealed that upon PilN binding, there is a large domain closure in PilM that alters its ATP binding site. Using biolayer interferometry, we found that the association rate of PilN with PilM is higher in the presence of ATP compared with ADP. Bacterial two-hybrid data suggested the connectivity of the cytoplasmic and inner membrane components of the type IVa pilus machinery in P. aeruginosa , with PilM binding to PilB, PilT, and PilC in addition to PilN. Pull-down experiments demonstrated direct interactions of PilM with PilB and PilT. As a result, we propose a working model in which dynamic binding of PilN facilitates functionally relevant structural changes in PilM.

36 MATERIALS SCIENCE↗

Detailed Characterization of Nuclear Recoil Pulse Shape Discrimination in the DarkSide-50 Direct Dark Matter Experiment

While evidence of non-baryonic dark matter has been accumulating for decades, its exact nature continues to remain a mystery. Weakly Interacting Massive Particles (WIMPs) are a well motivated candidate which appear in certain extensions of the Standard Model, independently of dark matter theory. If such particles exist, they should occasionally interact with particles of normal matter, producing a signal which may be detected. The DarkSide-50 direct dark matter experiment aims to detect the energy of recoiling argon atoms due to the elastic scattering of postulated WIMPs. In order to make such a discovery, a clear understanding of both the background and signal region is essential. This understanding requires a careful study of the detector's response to radioactive sources, which in turn requires such sources may be safely introduced into or near the detector volume and reliably removed. The CALibration Insertaion System (CALIS) was designed and built for this purpose in a j oint effort between Fermi National Laboratory and the University of Hawaii. This work describes the design and testing of CALIS, its installation and commissioning at the Laboratori Nazionali del Gran Sasso (LNGS) and the multiple calibration campaigns which have successfully employed it. As nuclear recoils produced by WIMPs are indistinguishable from those produced by neutrons, radiogenic neutrons are both the most dangerous class of background and a vital calibration source for the study of the potential WIMP signal. Prior to the calibration of DarkSide-50 with radioactive neutron sources, the acceptance region was determined by the extrapolation of nuclear recoil data from a separate, dedicated experiment, ScENE, which measured the distribution of the pulse shape discrimination parameter, $f_{90}$, for nuclear recoils of known energies. This work demonstrates the validity of the extrapolation of ScENE values to DarkSide-50, by direct comparison of the $f_{90}$ distributio n of nuclear recoils from ScENE and an AmBe calibration sour! ce. The combined acceptance as defined by ScENE and the \textit{in-situ} AmBe calibration were used to establish the best WIMP exclusion limit on an argon target. Unfortunately, radioactive sources used for the calibration of DarkSide-50 are universally accompanied by gamma decays, which obscure the low energy region where most WIMP interactions are expected to occur and seem to make continuing dependence on an external measurement such as ScENE inevitable. However, this work presents a novel method of nuclear recoil calibration employing event selection, unique to the design of DarkSide-50, which produces a nearly pure sample of nuclear recoils. Further, it describes the execution of a neutron calibration campaign, from planning to analysis, which yielded a valuable data set for defining the acceptance region. Together with the event selection techniques, this allows for the definition of the acceptance region independent of ScENE values. Two analytical models of the $f_{90 }$ distribution are described and their results for nuclear recoils are compared. Finally, a detailed study of integrated noise in nuclear and electron recoil

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Crystal structure of E. coli ZinT with one zinc-binding mode and complexed with citrate

Highlights: • Crystal structure of E. coli ZinT complexed with citrate in one zinc-binding mode. • The bound zinc shows octahedral coordination by histidine residues and citrate. • EcZinT exists as a monomer in solution in the absence and presence of zinc ions. The ZnuABC ATP-binding cassette transporter found in gram-negative bacteria has been implicated in ensuring adequate zinc import into Zn(II)-poor environments. ZinT is an essential component of ZnuABC and contributes to metal transport by transferring metals to ZnuA, which delivers them to ZnuB in periplasmic zinc recruitment. Although several structures of E. coli ZinT have been reported, its zinc-binding sites and oligomeric state have not been clearly identified. Here, we report the crystal structure of E. coli ZinT at 1.76 Å resolution. This structure contains one zinc ion in its calycin-like domain, and this ion is coordinated by three highly conserved histidine residues (His167, His176 and His178). Moreover, three oxygen atoms (O{sub 1}, O{sub 6} and O{sub 7}) from the citrate molecule interact with zinc, giving the zinc ion stable octahedral coordination. Our EcZinT structure shows the fewest zinc ions bound of all reported EcZinT structures. Crystallographic packing and size exclusion chromatography suggest that EcZinT prefers to form monomers in solution. Our results provide insights into the molecular function of ZinT.

60 APPLIED LIFE SCIENCES↗

Structural Basis for Noncanonical Substrate Recognition of Cofilin/ADF Proteins by LIM Kinases

Cofilin/actin-depolymerizing factor (ADF) proteins are critical nodes that relay signals from protein kinase cascades to the actin cytoskeleton, in particular through site-specific phosphorylation at residue Ser3. This is important for regulation of the roles of cofilin in severing and stabilizing actin filaments. Consequently, cofilin/ADF Ser3 phosphorylation is tightly controlled as an almost exclusive substrate for LIM kinases. Here we determine the LIMK1:cofilin-1 co-crystal structure. We find an interface that is distinct from canonical kinase-substrate interactions. We validate this previously unobserved mechanism for high-fidelity kinase-substrate recognition by in vitro kinase assays, examination of cofilin phosphorylation in mammalian cells, and functional analysis in S. cerevisiae. The interface is conserved across all LIM kinases. Remarkably, we also observe both pre- and postphosphotransfer states in the same crystal lattice. Furthermore, this study therefore provides a molecular understanding of how kinase-substrate recognition acts as a gatekeeper to regulate actin cytoskeletal dynamics.

59 BASIC BIOLOGICAL SCIENCES↗

Quantifying uncertainties due to irreducible three-body forces in deuteron-nucleus reactions

Deuteron-induced nuclear reactions are an essential tool for probing the structure of nuclei as well as astrophysical information such as (n, γ) cross sections. The deuteron-nucleus system is typically described within a Faddeev three-body model consisting of a neutron (n), a proton (p), and the target nucleus (A) interacting through pairwise phenomenological potentials. While Faddeev techniques enable the exact description of the three-body dynamics, their predictive power is limited in part by the omission of irreducible neutron-proton-nucleus three-body force (n–p–A 3BF). Here, our goal is to quantify systematic uncertainties stemming from the reduction of deuteron-nucleus (d + A) dynamics to a picture of three pointlike nuclear clusters interacting via pairwise nucleon-nucleus forces, using as testing grounds d + α scattering and the 6 Li ground state. We particularly focus on quantifying uncertainties arising from the full antisymmetrization of the (A + 2)-body system with the target nucleus fixed in its ground state. We adopt the ab initio no-core shell model coupled with the resonating group method (NCSM/RGM) to compute microscopic n–α and p–α interactions, and use them in a three-body description of the d + α system by means of momentum-space Faddeev-type equations. Simultaneously, we also carry out ab initio calculations of d + α scattering and 6 Li ground state by means of six-body NCSM/RGM calculations to serve as a benchmark for the three-body model predictions given by the Faddeev calculations. By comparing the Faddeev and NCSM/RGM results, we show that the irreducible n–p–α 3BF has a non-negligible effect on bound state and scattering observables alike. Specifically, the Faddeev approach yields a 6 Li ground state that is approximately 600 keV shallower than the one obtained with the NCSM/RGM. Additionally, the Faddeev calculations for d + α scattering yield a 3 + resonance that is located approximately 400 keV higher in energy compared to the NCSM/RGM result. The shape of the d + α angular distributions computed using the two approaches also differ, owing to the discrepancy in the predictions of the 3 + resonance energy. The Faddeev three-body model predictions for d + α scattering and 6 Li using microscopic n–α and p–α potentials differ from those computed microscopically with the NCSM/RGM. These discrepancies are due to the n–p–α 3BF, which arises from two-nucleon exchange terms in the microscopic d–α interaction and are not accounted for in the three-body model Faddeev calculations. This study lays the foundation for future parametrizations of the 3BF due to Pauli exclusion principle effects in improved three-body calculations of deuteron-induced reactions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

An eccentric binary millisecond pulsar with a helium white dwarf companion in the galactic field

Low-mass white dwarfs (LMWDs) are believed to be exclusive products of binary evolution, as the universe is not old enough to produce them from single stars. Because of the strong tidal forces operating during the binary interaction phase, the remnant systems observed today are expected to have negligible eccentricities. Here, we report on the first unambiguous identification of an LMWD in an eccentric (e = 0.13) orbit around the millisecond pulsar PSR J2234+0511, which directly contradicts this picture. We use our spectra and radio-timing solution (derived elsewhere) to infer the WD temperature (T{sub eff}=8600±190 K), and peculiar systemic velocity relative to the local standard of rest (≃31 km s{sup −1}). We also place model-independent constraints on the WD radius (R{sub WD}=0.024{sub −0.002}{sup +0.004} R{sub ⊙}) and surface gravity (log g=7.11{sub −0.16}{sup +0.08} dex). The WD and kinematic properties are consistent with the expectations for low-mass X-ray binary evolution and disfavor a dynamic three-body formation channel. In the case of the high eccentricity being the result of a spontaneous phase transition, we infer a mass of ∼1.60 M {sub ⊙} for the pulsar progenitor, which is too low for the quark-nova mechanism proposed by Jiang et al., and too high for the scenario of Freire and Tauris, in which a WD collapses into a neutron star via a rotationally delayed accretion-induced collapse. We find that eccentricity pumping via interaction with a circumbinary disk is consistent with our inferred parameters. Finally, we report tentative evidence for pulsations that, if confirmed, would transform the star into an unprecedented laboratory for WD physics.

79 ASTRONOMY AND ASTROPHYSICS↗

Probing sub-5 Ångstrom micropores in carbon for precise light olefin/paraffin separation

Olefin/paraffin separation is an important but challenging and energy-intensive process in petrochemical industry. The realization of carbons with size-exclusion capability is highly desirable but rarely reported. Herein, we report polydopamine-derived carbons (PDA-Cx, where x refers to the pyrolysis temperature) with tailorable sub-5 Å micropore orifices together with larger microvoids by one-step pyrolysis. The sub-5 Å micropore orifices centered at 4.1–4.3 Å in PDA-C800 and 3.7–4.0 Å in PDA-C900 allow the entry of olefins while entirely excluding their paraffin counterparts, performing a precise cut-off to discriminate olefin/paraffin with sub-angstrom discrepancy. The larger voids enable high C 2 H 4 and C 3 H 6 capacities of 2.25 and 1.98 mmol g –1 under ambient conditions, respectively. Breakthrough experiments confirm that a one-step adsorption-desorption process can obtain high-purity olefins. Inelastic neutron scattering further reveals the host–guest interaction of adsorbed C 2 H 4 and C 3 H 6 molecules in PDA-Cx. This study opens an avenue to exploit the sub-5 Å micropores in carbon and their desirable size-exclusion effect.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Interfacial Water Manipulation with Ionic Liquids for the Oxygen Reduction Reaction

The role that interfacial water plays in both promoting and inhibiting the electrochemical oxygen reduction reaction (ORR) remains somewhat unclear and controversial. Here, we use electroanalytical chemistry, spectroscopy, and microkinetic modeling to probe the impact of hydrophobic ionic liquid (IL) thin films on interfacial water structure and its role in promoting or inhibiting the ORR. Through the use of in situ ATR-SEIRAS, we find that the IL thin films limit the content of water at the interface and prevent the formation of hydrogen bond stabilized water organization. The impact of this exclusion of water on the promotion of the ORR is through the reduced coverage of OH ad spectator species. The decreased solvation of “active” OH ad species weakens its interaction with the catalyst surface, lowering the barrier to the last step in the ORR mechanism. This “destabilized” OH ad impact on ORR kinetics is confirmed through a microkinetic model. Furthermore, the results presented here highlight the mechanistic pathway through which hydrophobic ILs enhance ORR kinetics and point to pathways to both further improve this performance enhancement and the potential for integration of hydrophobic ILs into other technologically relevant elementary electrochemical reactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Dark Photon Dark Matter and Low-frequency Gravitational-wave Detection with Gaia-like Astrometry

Astrometric surveys offer us a method for searching for elusive cosmic signatures, such as ultralight dark photon dark matter and gravitational waves (GWs), by observing the temporal change of stars’ apparent locations. The detection capabilities of such surveys rapidly decrease at low frequencies, because the signals become hardly distinguishable from the background motion of stars. In this work, we find that the background motion can be well described by a linear model over time, based on which we propose a linear background subtraction scheme. Compared to the conventional quadratic subtraction, the advantage of linear subtraction emerges within the frequency range below 6 × 10 −9 Hz. Taking dark photons with purely gravitational interactions, dark photons with additional U(1) B or U(1) B−L gauge interactions, and low-frequency GWs as examples, we illustrate that the linear subtraction scheme can result in an enhancement of more than 1 order of magnitude in the exclusion limits of Gaia-like experiments in the low-frequency range.

Astrometry↗

Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu

Prolyl hydroxylation is a very common post-translational modification and plays many roles in eukaryotes such as collagen stabilization, hypoxia sensing, and controlling protein transcription and translation. There is a growing body of evidence that suggests that prokaryotes contain prolyl 4-hydroxylases (P4Hs) homologous to the hypoxia-inducible factor (HIF) prolyl hydroxylase domain (PHD) enzymes that act on elongation factor Tu (EFTu) and are likely involved in the regulation of bacterial translation. Recent biochemical and structural studies with a PHD from Pseudomonas putida (PPHD) determined that it forms a complex with EFTu and hydroxylates a prolyl residue of EFTu. Moreover, while animal, plant, and viral P4Hs act on peptidyl proline, most prokaryotic P4Hs have been known to target free l-proline; the exceptions include PPHD and a P4H from Bacillus anthracis (BaP4H) that modifies collagen-like proline-rich peptides. Here we use biophysical and mass spectrometric methods to demonstrate that BaP4H recognizes full-length BaEFTu and a BaEFTu 9-mer peptide for site-specific proline hydroxylation. Using size-exclusion chromatography coupled small-angle X-ray scattering (SEC–SAXS) and binding studies, we determined that BaP4H forms a 1:1 heterodimeric complex with BaEFTu. The SEC–SAXS studies reveal dissociation of BaP4H dimeric subunits upon interaction with BaEFTu. While BaP4H is unusual within bacteria in that it is structurally and functionally similar to the animal PHDs and collagen P4Hs, respectively, this work provides further evidence of its promiscuous substrate recognition. Lastly, it is possible that the enzyme might have evolved to hydroxylate a universally conserved protein in prokaryotes, similar to the PHDs, and implies a functional role in B. anthracis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗