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At least 235 records · Page 13

A map of the rubisco biochemical landscape

Rubisco is the primary CO 2 -fixing enzyme of the biosphere, yet it has slow kinetics. The roles of evolution and chemical mechanism in constraining its biochemical function remain debated. Engineering efforts aimed at adjusting the biochemical parameters of rubisco have largely failed, although recent results indicate that the functional potential of rubisco has a wider scope than previously known. Here we developed a massively parallel assay, using an engineered Escherichia coli in which enzyme activity is coupled to growth, to systematically map the sequence–function landscape of rubisco. Composite assay of more than 99% of single-amino acid mutants versus CO 2 concentration enabled inference of enzyme velocity and apparent CO 2 affinity parameters for thousands of substitutions. This approach identified many highly conserved positions that tolerate mutation and rare mutations that improve CO 2 affinity. These data indicate that non-trivial biochemical changes are readily accessible and that the functional distance between rubiscos from diverse organisms can be traversed, laying the groundwork for further enzyme engineering efforts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multi-machine validation of plasma initiation modelling and prospects for future devices: Predicting plasma initiation using only hardware design and control room input data

This paper reports on the generic prediction capability of full electromagnetic plasma initiation modelling with DYON, which was carried out for the first time in fusion research by the joint modelling of the International Tokamak Physics Activity—Integrating Operation Scenario group. The following devices were included in the experiment database: VEST (spherical torus, copper coils, Stainless steel wall, R/a = 0.3 m/0.2 m, V v = 3.7 m 3 ), MAST-U (spherical torus, copper coils, C wall, R/a = 0.7 m/0.5 m, V v = 55 m 3 ), EAST (conventional tokamak, superconducting coils, metallic wall, R/a = 1.85 m/0.5 m, V v = 38 m 3 ), DIII-D (conventional tokamak, copper coils, C wall, R/a = 1.67 m/0.65 m, V v = 35 m 3 ), and KSTAR (conventional tokamak, superconducting coils, C wall, R/a = 1.8 m/0.5 m, V v = 55 m 3 ). Despite the different hardware features of the devices, the required operating spaces of the loop voltage induction and prefill gas pressure for inductive plasma initiation in each device were successfully reproduced by the predictive simulations with DYON using only the individual hardware design and the control room input data for each discharge. This successful validation across multiple machines demonstrates that the full electromagnetic DYON modelling can capture the essential physics of inductive plasma initiation. The simulation settings commonly employed for all modelling and the modifications necessary to account for the discrepancies between individual devices are reported. Predictions for ITER based on the multi-machine validation indicate that a wide range of prefill gas pressures exists for the Townsend breakdown and the plasma burn-through (0.01–1.5 mPa).

DYON↗

Siderophores and secondary metabolites produced by Ganoderma adspersum

Ganoderma adspersum is a white-rot wood-degrading basidiomycete of ecological, biotechnological and medicinal interest. In addition to its role in lignin degradation, it produces bioactive metabolites with reported antimicrobial and antioxidant activities. However, the mechanisms of iron acquisition, including siderophore-mediated pathways, remain poorly characterized in Ganoderma species. Improved understanding of these systems is essential to elucidate their contributions to fungal physiology, secondary metabolism and ecological adaptation. In this study, the genome of G. adspersum was sequenced for the first time and screened for genes that may be involved in the production of secondary metabolites. A gene cluster was identified as potentially involved in iron uptake. In particular, genes related to non-ribosomal peptide synthetases were detected next to a gene encoding a monooxygenase and indicated a potential hydroxamate-family siderophore. Liquid chromatography (LC)-ES-MS analysis of secondary metabolites secreted by G. adspersum into the growth medium under iron-limiting conditions revealed a group of previously undescribed siderophores. Genome and MS/MS analysis suggested that these structures might be related to the coprinoferrin family of siderophores. Aside from siderophores, the genome and LC-MS analysis revealed G. adspersum to be a prolific producer of a variety of triterpenoids and sesquiterpenoids, in agreement with previous findings. This is the first description of the genome sequence of G. adspersum and its siderophores.

Reyes, Carolina [Laboratory for Cellulose and Wood↗

The 2022 High-energy Outburst and Radio Disappearing Act of the Magnetar 1E 1547.0–5408

We report the radio and high-energy properties of a new outburst from the radio-loud magnetar 1E 1547.0–5408. Following the detection of a short burst from the source with Swift-BAT on 2022 April 7, observations by NICER detected an increased flux peaking at (6.0 ± 0.4) × 10 –11 erg s –1 cm –2 in the soft X-ray band, falling to a baseline level of 1.7 × 10 –11 erg s –1 cm –2 over a 17 day period. Joint spectroscopic measurements by NICER and NuSTAR indicated no change in the hard nonthermal tail despite the prominent increase in soft X-rays. Observations at radio wavelengths with Murriyang, the 64 m Parkes radio telescope, revealed that the persistent radio emission from the magnetar disappeared at least 22 days prior to the initial Swift-BAT detection and was redetected two weeks later. Such behavior is unprecedented in a radio-loud magnetar, and may point to an unnoticed slow rise in the high-energy activity prior to the detected short bursts. Finally, our combined radio and X-ray timing revealed the outburst coincided with a spin-up glitch, where the spin frequency and spin-down rate increased by 0.2 ± 0.1 μHz and (–2.4 ± 0.1) × 10 –12 s –2 , respectively. A linear increase in the spin-down rate of (–2.0 ± 0.1) × 10 –19 s –3 was also observed over 147 days of postoutburst timing. Our results suggest that the outburst may have been associated with a reconfiguration of the quasi-polar field lines, likely signaling a changing twist, accompanied by spatially broader heating of the surface and a brief quenching of the radio signal, yet without any measurable impact on the hard X-ray properties.

79 ASTRONOMY AND ASTROPHYSICS↗

The Thermal Plumbing System of Stromboli Volcano, Aeolian Islands (Italy) Inferred From Electrical Conductivity and Induced Polarization Tomography

Abstract We performed the first 3D island‐scale tomography of the electrical conductivity of Stromboli volcano (Aeolian Islands, Italy) using 2D acquisition lines (37.2 km) and a total of 18,880 measurements and 2,402 unique electrode locations. This 3D data set was inverted using a Gauss‐Newton algorithm, parallel‐processing on an unstructured tetrahedral mesh containing 678,420 finite‐element nodes and 3,580,145 elements to account for the topography of the volcanic island. The tomogram exhibits a conductive body (10 −2 –1.0 S m −1 ) consistent with the location of CO 2 and temperature anomalies observed at the ground surface. It corresponds to the hydrothermal system with high electrical conductivity associated with alteration. In order to confirm this interpretation, a 2.5D large‐scale induced polarization tomography was performed crossing the volcano. The joint interpretation of the conductivity and normalized chargeability is done with a petrophysical model previously tested and verified at both shield‐ and strato‐volcanoes. This model implies that alteration (through the effect of the cation exchange capacity associated with clay minerals and zeolites) plays a strong role in both controlling the electrical conductivity and normalized chargeability at Stromboli volcano. A temperature tomogram, derived from the geoelectrical measurements, is consistent with surface temperature anomalies and the Very Long Period (VLP) seismicity related to the mild‐explosive activity. This survey displays at 600 m a.s.l. a lateral shift in the highest temperature location, also corresponding to the source of VLP seismicity. Structural boundaries have a major role in the hottest hydrothermal fluids rising below the active crater terrace of Stromboli volcano.

58 GEOSCIENCES↗

The SPT-deep Cluster Catalog: Sunyaev–Zel’dovich Selected Clusters from Combined SPT-3G and SPTpol Measurements over 100 Square Degrees

We present a catalog of 500 galaxy cluster candidates in the SPT-Deep field: a 100 deg$^{2}$ field that combines data from the SPT-3G and SPTpol surveys to reach noise levels of 3.0, 2.2, and 9.0 μK-arcmin at 95, 150, and 220 GHz, respectively. Candidates are selected via the thermal Sunyaev–Zel’dovich (SZ) effect with a minimum significance of ξ = 4.0, resulting in a catalog of purity ∼89%. Optical data from the Dark Energy Survey and infrared data from the Spitzer Space Telescope are used to confirm 442 cluster candidates. The clusters span 0.12 < z ≲ 1.8 and 1.0 × 10$^{14}$M$_{⊙}$/h$_{70}$ < M$_{500c}$ < 8.7 × 10$^{14}$M$_{⊙}$/h$_{70}$. The sample’s median redshift is 0.74, and the median mass is 1.7 × 10$^{14}$M$_{⊙}$/h$_{70}$; these are the lowest median mass and highest median redshift of any SZ-selected sample to date. We assess the effect of infrared emission from cluster member galaxies on cluster selection by performing a joint fit to the infrared dust and tSZ signals by combining measurements from SPT and overlapping submillimeter data from Herschel/SPIRE. We find that at high redshift (z > 1), the tSZ signal is reduced by $17.9_{−3.2}^{+3.8}$%$(3.8_{−0.7}^{+0.9}$%$)$ at 150 GHz (95 GHz) due to dust contamination. We repeat our cluster finding method on dust-nulled SPT maps and find the resulting catalog is consistent with the nominal SPT-Deep catalog, suggesting dust contamination does not significantly impact the SPT-Deep selection function; we attribute this lack of bias to the inclusion of the SPT 220 GHz band.

79 ASTRONOMY AND ASTROPHYSICS↗

Precise and accurate cosmology with CMB×LSS power spectra and bispectra

With the advent of a new generation of cosmological experiments that will provide high-precision measurements of the cosmic microwave background (CMB) and galaxies in the large-scale structure, it is pertinent to examine the potential of performing a joint analysis of multiple cosmological probes. In this paper, we study the cosmological information content contained in the one-loop power spectra and tree bispectra of galaxies cross-correlated with CMB lensing. We use the FFTLog method to compute angular correlations in spherical harmonic space, applicable for wide angles that can be accessed by forthcoming galaxy surveys. Here, we find that adding the bispectra and cross-correlations with CMB lensing offers a significant improvement in parameter constraints, including those on the total neutrino mass, M ν , and local non-Gaussianity amplitude, ƒ NL . In particular, our results suggest that the combination of the Vera C. Rubin Observatory's Legacy Survey of Space and Time (LSST) and CMB-S4 will be able to achieve σ(M ν )=42 meV from galaxy and CMB lensing correlations, and σ(M ν )=12 meV when further combined with the CMB temperature and polarization data, without any prior on the optical depth.

79 ASTRONOMY AND ASTROPHYSICS↗

Subcloud and Cloud-Base Latent Heat Fluxes during Shallow Cumulus Convection

Doppler and Raman lidar observations of vertical velocity and water vapor mixing ratio are used to probe the physics and statistics of subcloud and cloud-base latent heat fluxes during cumulus convection at the ARM Southern Great Plains (SGP) site in Oklahoma, United States. The statistical results show that latent heat fluxes increase with height from the surface up to ~0.8 Z i (where Z i is the convective boundary layer depth) and then decrease to ~0 at Z i . Peak fluxes aloft exceeding 500 W m −2 are associated with periods of increased cumulus cloud cover and stronger jumps in the mean humidity profile. These entrainment fluxes are much larger than the surface fluxes, indicating substantial drying over the 0–0.8 Z i layer accompanied by moistening aloft as the CBL deepens over the diurnal cycle. We also show that the boundary layer humidity budget is approximately closed by computing the flux divergence across the 0–0.8 Z i layer. Composite subcloud velocity and water vapor anomalies show that clouds are linked to coherent updraft and moisture plumes. The moisture anomaly is Gaussian, most pronounced above 0.8 Z i and systematically wider than the velocity anomaly, which has a narrow central updraft flanked by downdrafts. This size and shape disparity results in downdrafts characterized by a high water vapor mixing ratio and thus a broad joint probability density function (JPDF) of velocity and mixing ratio in the upper CBL. We also show that cloud-base latent heat fluxes can be both positive and negative and that the instantaneous positive fluxes can be very large (~10 000 W m −2 ). However, since cloud fraction tends to be small, the net impact of these fluxes remains modest.

54 ENVIRONMENTAL SCIENCES↗

Cosmology from cross-correlation of ACT-DR4 CMB lensing and DES-Y3 cosmic shear

Cross-correlation between weak lensing of the Cosmic Microwave Background (CMB) and weak lensing of galaxies offers a way to place robust constraints on cosmological and astrophysical parameters with reduced sensitivity to certain systematic effects affecting individual surveys. We measure the angular cross-power spectrum between the Atacama Cosmology Telescope (ACT) DR4 CMB lensing and the galaxy weak lensing measured by the Dark Energy Survey (DES) Y3 data. Our baseline analysis uses the CMB convergence map derived from ACT-DR4 and Planck data, where most of the contamination due to the thermal Sunyaev Zel’dovich effect is removed, thus avoiding important systematics in the cross-correlation. In our modelling, we consider the nuisance parameters of the photometric uncertainty, multiplicative shear bias and intrinsic alignment of galaxies. The resulting cross-power spectrum has a signal-to-noise ratio = 7.1 and passes a set of null tests. We use it to infer the amplitude of the fluctuations in the matter distribution (S_8 ≡ σ_8(Ω_m/0.3)^0.5 = 0.782 ± 0.059) with informative but well-motivated priors on the nuisance parameters. We also investigate the validity of these priors by significantly relaxing them and checking the consistency of the resulting posteriors, finding them consistent, albeit only with relatively weak constraints. This cross-correlation measurement will improve significantly with the new ACT-DR6 lensing map and form a key component of the joint 6×2pt analysis between DES and ACT.

79 ASTRONOMY AND ASTROPHYSICS↗

Procedure for the Computational Models created for the DOE/NRC Collaboration for Criticality Safety Support for Commercial-Scale HALEU Fuel Cycles Project (DNCSH)

This procedure outlines the application models developed as part of the US Department of Energy (DOE) and Nuclear Regulatory Commission (NRC) collaboration for criticality safety support for commercial scale HALEU fuel cycle and transportation (DNCSH) project, an effort authorized by the US Congress. The project is a joint effort among the DOE, NRC, numerous national laboratories, and private enterprises with project management from Oak Ridge National Laboratory.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Redshift Evolution of the Feedback–Cooling Equilibrium in the Core of 48 SPT Galaxy Clusters: A Joint Chandra–SPT–ATCA Analysis

We analyze the cooling and feedback properties of 48 galaxy clusters at redshifts 0.4 < z < 1.3 selected from the South Pole Telescope (SPT) catalogs to evolve like the progenitors of massive and well-studied systems at z ~ 0. We estimate the radio power at the brightest cluster galaxy (BCG) location of each cluster from an analysis of Australia Telescope Compact Array data. Assuming that the scaling relation between the radio power and active galactic nucleus (AGN) cavity power P cav observed at low redshift does not evolve with redshift, we use these measurements in order to estimate the expected AGN cavity power in the core of each system. We estimate the X-ray luminosity within the cooling radius L cool of each cluster from a joint analysis of the available Chandra X-ray and SPT Sunyaev–Zel'dovich (SZ) data. This allows us to characterize the redshift evolution of the P cav /L cool ratio. When combined with low-redshift results, these constraints enable investigations of the properties of the feedback–cooling cycle across 9 Gyr of cluster growth. We model the redshift evolution of this ratio measured for cool-core clusters by a log-normal distribution Log-N (α + βz, σ 2 ) and constrain the slope of the mean evolution to β = -0.05 ± 0.47. This analysis improves the constraints on the slope of this relation by a factor of two. We find no evidence of redshift evolution of the feedback–cooling equilibrium in these clusters, which suggests that the onset of radio-mode feedback took place at an early stage of cluster formation. High values of P cav /L cool are found at the BCG location of noncool-core clusters, which might suggest that the timescales of the AGN feedback cycle and the cool core–noncool core transition are different. This work demonstrates that the joint analysis of radio, SZ, and X-ray data solidifies the investigation of AGN feedback at high redshifts.

79 ASTRONOMY AND ASTROPHYSICS↗

Joint X-Ray, Kinetic Sunyaev–Zeldovich, and Weak Lensing Measurements: Toward a Consensus Picture of Efficient Gas Expulsion from Groups and Clusters

There is no consensus on how baryon feedback shapes the underlying matter distribution from either simulations or observations. We confront the uncertain landscape by jointly analyzing new measurements of the gas distribution around groups and clusters—DESI+ACT kinetic Sunyaev–Zel’dovich (kSZ) effect profiles and eROSITA X-ray gas masses—with mean halo masses characterized by galaxy–galaxy lensing. Across a wide range of halo masses ( M 500 = 10 13−14 M ⊙ ) and redshifts (0 < z < 1), we find evidence of more efficient gas expulsion beyond several R 500 than predicted by most state-of-the-art simulations. A like-with-like comparison reveals all kSZ and X-ray observations are inconsistent with the fiducial 1 Gpc 3 hydrodynamical FLAMINGO simulation, which was calibrated to reproduce pre-eROSITA X-ray gas fractions: eROSITA X-ray gas fractions are 2 × lower than the simulation, and the kSZ measurements are combined >8σ discrepant. The FLAMINGO simulation variant with the most gas expulsion, and therefore the most suppression of the matter power spectrum relative to a dark-matter-only simulation, provides a good description of how much gas is expelled and how far it extends; the enhanced gas depletion is achieved by more powerful but less frequent AGN outbursts. Joint kSZ, X-ray, and lensing measurements form a consistent picture of gas expulsion beyond several R 500 , implying a more suppressed matter power spectrum than predicted by most recent simulations. Complementary observables (e.g., thermal Sunyaev–Zel’dovich effect and fast radio bursts) and next-generation simulations are critical to understanding the physical mechanism behind this extreme gas expulsion and mapping its impact on the large-scale matter distribution.

79 ASTRONOMY AND ASTROPHYSICS↗

Cosmological constraints from the tomography of DES-Y3 galaxies with CMB lensing from ACT DR4

We present a measurement of the cross-correlation between the MagLim galaxies selected from the Dark Energy Survey (DES) first three years of observations (Y3) and cosmic microwave background (CMB) lensing from the Atacama Cosmology Telescope (ACT) Data Release 4 (DR4), reconstructed over ∼ 436 deg 2 of the sky. Our galaxy sample, which covers ∼ 4143 deg 2 , is divided into six redshift bins spanning the redshift range of 0.20 < z <1.05. We adopt a blinding procedure until passing all consistency and systematics tests. After imposing scale cuts for the cross-power spectrum measurement, we reject the null hypothesis of no correlation at 9.1σ. We constrain cosmological parameters from a joint analysis of galaxy and CMB lensing-galaxy power spectra considering a flat ΛCDM model, marginalized over 23 astrophysical and systematic nuisance parameters. We find the clustering amplitude S 8 ≡ σ 8 (Ω m /0.3) 0.5 = 0.75 +0.04 -0.05 . In addition, we constrain the linear growth of cosmic structure as a function of redshift. Our results are consistent with recent DES Y3 analyses and suggest a preference for a lower S 8 compared to results from measurements of CMB anisotropies by the Planck satellite, although at a mild level (< 2σ) of statistical significance.

79 ASTRONOMY AND ASTROPHYSICS↗

Stellar mass as a galaxy cluster mass proxy: application to the Dark Energy Survey redMaPPer clusters

Abstract We introduce a galaxy cluster mass observable, μ⋆, based on the stellar masses of cluster members, and we present results for the Dark Energy Survey (DES) Year 1 (Y1) observations. Stellar masses are computed using a Bayesian model averaging method, and are validated for DES data using simulations and COSMOS data. We show that μ⋆ works as a promising mass proxy by comparing our predictions to X-ray measurements. We measure the X-ray temperature–μ⋆ relation for a total of 129 clusters matched between the wide-field DES Y1 redMaPPer catalogue and Chandra and XMM archival observations, spanning the redshift range 0.1 < $z$ < 0.7. For a scaling relation that is linear in logarithmic space, we find a slope of α = 0.488 ± 0.043 and a scatter in the X-ray temperature at fixed μ⋆ of $\sigma _{{\rm ln} T_\mathrm{ X}|\mu _\star }= 0.266^{+0.019}_{-0.020}$ for the joint sample. By using the halo mass scaling relations of the X-ray temperature from the Weighing the Giants program, we further derive the μ⋆-conditioned scatter in mass, finding $\sigma _{{\rm ln} M|\mu _\star }= 0.26^{+ 0.15}_{- 0.10}$. These results are competitive with well-established cluster mass proxies used for cosmological analyses, showing that μ⋆ can be used as a reliable and physically motivated mass proxy to derive cosmological constraints.

79 ASTRONOMY AND ASTROPHYSICS↗

The TESS–Keck Survey. I. A Warm Sub-Saturn-mass Planet and a Caution about Stray Light in TESS Cameras

We report the detection of a Saturn-size exoplanet orbiting HD 332231 (TOI 1456) in light curves from the Transiting Exoplanet Survey Satellite (TESS). HD 332231—an F8 dwarf star with a V-band magnitude of 8.56—was observed by TESS in Sectors 14 and 15. We detect a single-transit event in the Sector 15 presearch data conditioning (PDC) light curve. We obtain spectroscopic follow-up observations of HD 332231 with the Automated Planet Finder, Keck I, and SONG telescopes. The orbital period we infer from radial velocity (RV) observations leads to the discovery of another transit in Sector 14 that was masked by PDC due to scattered light contamination. A joint analysis of the transit and RV data confirms the planetary nature of HD 332231 b, a Saturn-size (0.867{sub −0.025}{sup +0.027} R{sub J}), sub-Saturn-mass (0.244±0.021 M{sub J}) exoplanet on a 18.71 day circular orbit. The low surface gravity of HD 332231 b and the relatively low stellar flux it receives make it a compelling target for transmission spectroscopy. Also, the stellar obliquity is likely measurable via the Rossiter–McLaughlin effect, an exciting prospect given the 0.14 au orbital separation of HD 332231 b. The spectroscopic observations do not provide substantial evidence for any additional planets in the HD 332231 system, but continued RV monitoring is needed to further characterize this system. We also predict that the frequency and duration of masked data in the PDC light curves for TESS Sectors 14–16 could hide transits of some exoplanets with orbital periods between 10.5 and 17.5 days.

79 ASTRONOMY AND ASTROPHYSICS↗

Measurement of the phase between strong and electromagnetic amplitudes in the decay J/ψ → ϕη

The first direct measurement of the relative phase between the strong and electromagnetic amplitudes for a J/ψ decaying into a vector-pseudoscalar final state is performed using 26 energy points of e + e − annihilation data between 3.00 GeV and 3.12 GeV. The data sets were collected by the BESIII detector with a total integrated luminosity of 452 pb −1 . By investigating the interference pattern in the cross section lineshape of e + e − → ϕη, the relative phase between the strong and electromagnetic amplitudes of J/ψ decay is determined to be within [133°, 228°] at 68% confidence level.

QCD↗