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Satellite Remote Sensing Studies of Biological and Biogeochemical Processing in the Ocean

The remote sensing of phycoerythrin-containing phytoplankton by ocean color was evaluated. Phycoerythrin (PE) can be remotely sensed by three methods: surface reflectance (Sathyendranath et al. 1994), by laser-activated fluorescence (Hoge and Swift 1986) and by passive fluorescence (Letelier et al. 1996). In collaboration with Dr. Frank Hoge and Robert Swift during Dr. Maria Vernet's tenure as Senior Visiting Scientist at Wallops Island, the active and passive methods were studied, in particular the detection of PE fluorescence and spectral reflectance from airborne LIDAR (AOL). Airborne instrumentation allows for more detailed and flexible sampling of the ocean surface than satellites thus providing the ideal platform to test model and develop algorithms than can later be applied to ocean color by satellites such as TERRA and AQUA. Dr. Vernet's contribution to the Wallops team included determination of PE in the water column, in conjunction with AOL flights in the North Atlantic Bight. In addition, a new flow-through fluorometer for PE determination by fluorescence was tested and calibrated. Results: several goals were achieved during this period. Cruises to the California Current, North Atlantic Bight, Gulf of Maine and Chesapeake Bay provided sampling under different oceanographic and optical conditions. The ships carried the flow-through fluorometer and samples for the determination of PE were obtained from the flow-through flow. The AOL was flown over the ship's track, usually several flights during the cruise, weather permitting.

Vernet, Maria↗

SeaWiFS technical report series. Volume 22: Prelaunch acceptance report for the SeaWFS radiometer

The final acceptance, or rejection, of the Sea-viewing Wide field-of-view Sensor (SeaWiFS) will be determined by the instrument's on-orbit operation. There is, however, an extensive set of laboratory measurements describing the operating characteristics of the radiometer. Many of the requirements in the Ocean Color Data Mission (OCDM) specifications can be checked only by laboratory measurements. Here, the calibration review panel (composed of the authors of this technical memorandum) examines the laboratory characterization and calibration of SeaWiFS in the light of the OCDM performance specification. Overall, the performance of the SeaWiFS instrument meets or exceeds the requirements of the OCDM contract in all but a few unimportant details. The detailed results of this examination are presented here by following the outline of the specifications, as found in the Contract. The results are presented in the form of requirements and compliance pairs. These results give conclusions on many, but not all, of the performance specifications. The acceptance of this panel of the performance of SeaWiFS must only be considered as an intermediate conclusion. The ultimate acceptance (or rejection) of the SeaWiFS data set will rely on the measurements made by the instrument on orbit.

Hooker, Stanford B.↗

Sky-Scanning Sun-Tracking Airborne Radiometer (3STAR): Instrument Design, Flight Testing, and Tracking Performance

The Sky-Scanning, Sun-Tracking Airborne Radiometer (3STAR) adapts commercial radiometer technology developed for the ocean color research community to airborne measurement of spectrally resolved solar irradiance and sky radiance. These atmospheric observations are used to derive aerosol optical depth (AOD), supporting localized AOD inputs for atmospheric correction of satellite and airborne data over terrestrial and aquatic (including optically dark) targets. The ability to regionally “tune” atmospheric correction schemes with relevant spatial AOD supports constraining atmospheric correction of remote sensing reflectance. Very wide dynamic range has been achieved for multi-channel band-pass-filter-radiometers originally designed for deployment into the water column. By actively tracking and directly pointing to the Sun, the light attenuation by aerosol particles in the atmospheric column can be quantified. These measurements improve knowledge of atmospheric constituents and the atmospheric corrections required to improve remote sensing capabilities for interpreting reflectance measurements from the Earth surface. 3STAR incorporates a custom Sun-tracking/sky-scanning pointing head, a Sun-tracking camera, and a commercially available, cylindrical, 19-channel radiometer tube assembly. An accurate and responsive mount and tracking system has been developed and certified to NASA and Naval Air Systems Command (NAVAIR) airworthiness standards for deployment into the aircraft slipstream. Ground and flight testing indicate typical tracking errors of less than 0.1 degrees, well within the field of view of the radiometer as required to minimize measurement uncertainty from alignment error. Preliminary AOD measurements compare to within 0.013 with 15 measurements from an Aerosol Robotic Network (AERONET) Cimel instrument at 500 nm wavelength and low solar angle.

Atmosphere↗

Ocean Data Acquisition System

The Ocean Data Acquisition System (ODAS) is a low cost instrument with potential commercial application. It is easily mounted on a small aircraft and flown over the coastal zone ocean to remotely measure sea surface temperature and three channels of ocean color information. From this data, chlorophyll levels can be derived for use by ocean scientists, fisheries, and environmental offices. Data can be transmitted to shipboard for real-time use with sea truth measurements, ocean productivity estimates and fishing fleet direction. The aircraft portion of the system has two primary instruments: an IR radiometer to measure sea surface temperature and a three channel visible spectro-radiometer for 460, 490, and 520 nm wavelength measurements from which chlorophyll concentration can be derived. The aircraft package contains a LORAN-C unit for aircraft location information, clock, on-board data processor and formatter, digital data storage, packet radio terminal controller, and radio transceiver for data transmission to a ship. The shipboard package contains a transceiver, packet terminal controller, data processing and storage capability, and printer. Both raw data and chlorophyll concentrations are available for real-time analysis.

Johnson, B.↗

Assessment of Satellite Radiometry in the Visible Domain

Marine reflectance and chlorophyll-a concentration are listed among the Essential Climate Variables by the Global Climate Observing System. To contribute to climate research, the satellite ocean color data records resulting from successive missions need to be consistent and well characterized in terms of uncertainties. This chapter reviews various approaches that can be used for the assessment of satellite ocean color data. Good practices for validating satellite products with in situ data and the current status of validation results are illustrated. Model-based approaches and inter-comparison techniques can also contribute to characterize some components of the uncertainty budget, while time series analysis can detect issues with the instrument radiometric characterization and calibration. Satellite data from different missions should also provide a consistent picture in scales of variability, including seasonal and interannual signals. Eventually, the various assessment approaches should be combined to create a fully characterized climate data record from satellite ocean color.

ocean color↗

Recovering Nimbus Era Observations at the NASA GES DISC

Between 1964 and 1978, NASA launched a series of seven Nimbus meteorological satellites which provided Earth observations for 30 years. These satellites, carrying a total of 33 instruments to observe the Earth at visible, infrared, ultraviolet, and microwave wavelengths, revolutionized weather forecasting, provided early observations of ocean color and atmospheric ozone, and prototyped location-based search and rescue capabilities. The Nimbus series paved the way for a number of currently operational systems such as the EOS (Earth Observation System) Terra, Aqua, and Aura platforms. The original data archive includes both magnetic tapes and film media. These media are well past their expected end of life, placing at risk valuable data that are critical to extending the history of Earth observations back in time. GES DISC (Goddard Earth Sciences Data and Information Services Center) has been incorporating these data into a modern online archive by recovering the digital data files from the tapes, and scanning images of the data from film strips. The digital data products were written on obsolete hardware systems in outdated file formats, and in the absence of metadata standards at that time, were often written in proprietary file structures. Through a tedious and laborious process, oft-corrupted data are recovered, and incomplete metadata and documentation are reconstructed.

data recovery↗

Vicarious Calibration of the Long Near Infrared Band: Cross-Sensor Differences in Sensitivity

Numerous assumptions and approximations are employed when translating satellite-derived radiance to surface remote sensing reflectance (RRS) for ocean color applications. Among these is the vicarious calibration coefficient (g) of the “long” near infrared band (NIRL) used for atmospheric correction. For this band, the prelaunch calibration has always been deemed sufficient [thus g(NIRL) = 1.00] as long as other bands are vicariously calibrated. Recent research, however, suggests that Moderate Resolution Imaging Spectroradiometer (MODIS)/Aqua RRS time series is quite sensitive to g(NIRL) (and associated vicarious gains in other bands). In this work, we assessed the sensitivity of Visible Infrared Imaging Radiometer Suite onboard the Suomi National Polar-orbiting Partnership satellite (VIIRS/SNPP) RRS to NIRL calibration and compared our results to previous MODIS/Aqua and Sea-viewing Wide Field-of-View Sensor onboard OrbView2 (SeaWiFS)/OrbView2 analysis. In doing so, we note that g(NIRL) sensitivities of mission-averaged RRS time series are lower for VIIRS and Sea-WiFS, relative to MODIS. At the scale of monthly climatologies (MCs), however, all sensors show prominent g(NIRL) sensitivity with that of SeaWiFS being the most substantial. These findings informed simulation analyses, whereby we identified signal-tonoise ratio (SNR) and radiant path geometry, as well as their interaction, as having notable impacts on g(NIRL) sensitivity. As such, g(NIRL) sensitivity is a necessary consideration for reflectance uncertainty budgets, especially for sensors with higher NIR SNR or particular prevailing radiant path geometries. Given the geometry components embedded within g(NIRL) sensitivity, such studies should be coupled with cross-sensor intercalibrations [e.g., using simultaneous same view (SSV) measurements] toward minimizing NIRL errors between satellite instruments, but such efforts will not completely remediate remaining cross-sensor biases in RRS. Index Terms—Moderate Resolution Imaging Spectroradiometer (MODIS)/Aqua, ocean color, ocean gyres, Sea-viewing Wide Field-of-View Sensor onboard OrbView2 (SeaWiFS), system vicarious calibration (SVC), Visible Infrared Imaging Radiometer Suite onboard the Suomi National Polar-orbiting Partnership satellite (VIIRS/SNPP).

MODIS↗

Volume 35, AMT-1 Cruise Report and Preliminary Results

This report documents the scientific activities on board the Royal Research Ship (RRS) 'James Clark Ross' during the irst Atlantic Meridional Transect (AMT-1), 21 September to 24 October 1995. The ship sailed from Grimsby (England) for Montevideo (Uruguay) and then continued on to Stanley (Falkland Islands). The primary objective of the AMT program is to investigate basic biological processes in the open Atlantic Ocean over very broad spatial scales. For AMT-1, the meridional range covered was approximately 50 deg N to 50 deg S or nearly 8,000 nmi. The measurements to be taken during the AMT cruises are fundamental for the calibration, validation, and continuing understanding of remotely sensed observations of biological oceanography. They are also important for understanding plankton community structure over latitudinal scales and the role of the world ocean in global carbon cycles. During AMT-1 a variety of instruments were used to map the physical, chemical, and biological structure of the upper 200 m of the water column. Ocean color measurements were made using state-of-the-art sensors, whose calibration was traceable to the highest international standards. New advances in fluorometry were used to measure photosynthetic activity, which was then used to further interpret primary productivity. A unique set of samples and data were collected for the planktonic assemblages that vary throughout the range of the transect. These data will yield new interpretations on community composition and their role in carbon cycling. While the various provinces of the Atlantic Ocean were being crossed, the partial pressure of CO2 was related to biological productivity. This comparison revealed the areas of drawdown of atmospheric CO2 and how these areas relate to the surrounding biological productivity. These data, plus the measurements of light attenuation and phytoplankton optical properties, will be used as a primary input for basin-scale biological productivity models to help develop ecosystem dynamics models which will be important for improving the forecasting abilities of modelers. The AMT program is also attempting to meet the needs of international agencies in their implementation of Sensor Intercomparison and Merger for Biological and Interdisciplinary Ocean Studies (SIMBIOS), a program to develop a methodology and operational capability to combine data products from the various ocean color satellite missions.

Hooker, Stanford B.↗

Dynamics of the Cold Water Event off the Southeast Coast of the United States in the Summer of 2003: An Application of NASA's Remote Sensing Data to Coastal Studies

The Moderate Resolution Imaging Spectroradiometer (MODIS) instruments onboard of Terra and Aqua satellites provide, for the first time, concurrent measurements of sea surface temperature (SST) and ocean color, which are suitable for coastal upwelling studies. The accuracy, the 1-km spatial resolution, and the almost complete daily coverage of the MODIS data compared with historical measurements make it advantageous for resolving important coastal fronts of chlorophyll concentration and temperature. The cold SST anomaly during summer 2003 off the coast of the South Atlantic Bight is an event that is comprehensively covered by NASA's MODIS and SeaWinds satellite observations. These data combined with in situ tide gauge, mooring, and ship measurements can be used to identify important dynamics responsible for the anomalous cold water event. The analysis of the data suggests that coastal upwelling occurs in the climatological summer forced by the climatological southerlies over the South Atlantic Bight area in summer. However, the strong buoyancy barrier in summer prevents the cold water below the thermocline from reaching the ocean surface. In summer 2003, the southwesterlies in July through August were extraordinarily strong and persistent, which generated the upwelling currents strong enough to overcome the buoyancy resistance. The results of this analysis demonstrate the possibility of monitoring and forecasting the event using combination of the satellite and in situ observations. The MODIS data are archived and distributed by the NASA's Goddard Earth Science (GES) Distributed Active Archive Center (DAAC). The data can be accessed via the URL http://wwv.daac.gsfc.nasa.gov/MODIS.

Yuan, Dongliang↗

Uncertainties in Coastal Ocean Color Products: Impacts of Spatial Sampling

With increasing demands for ocean color (OC) products with improved accuracy and well characterized, per-retrieval uncertainty budgets, it is vital to decompose overall estimated errors into their primary components. Amongst various contributing elements (e.g., instrument calibration, atmospheric correction, inversion algorithms) in the uncertainty of an OC observation, less attention has been paid to uncertainties associated with spatial sampling. In this paper, we simulate MODIS (aboard both Aqua and Terra) and VIIRS OC products using 30 m resolution OC products derived from the Operational Land Imager (OLI) aboard Landsat-8, to examine impacts of spatial sampling on both cross-sensor product intercomparisons and in-situ validations of R(sub rs) products in coastal waters. Various OLI OC products representing different productivity levels and in-water spatial features were scanned for one full orbital-repeat cycle of each ocean color satellite. While some view-angle dependent differences in simulated Aqua-MODIS and VIIRS were observed, the average uncertainties (absolute) in product intercomparisons (due to differences in spatial sampling) at regional scales are found to be 1.8%, 1.9%, 2.4%, 4.3%, 2.7%, 1.8%, and 4% for the R(sub rs)(443), R(sub rs)(482), R(sub rs)(561), R(sub rs)(655), Chla, K(sub d)(482), and b(sub bp)(655) products, respectively. It is also found that, depending on in-water spatial variability and the sensor's footprint size, the errors for an in-situ validation station in coastal areas can reach as high as +/- 18%. We conclude that a) expected biases induced by the spatial sampling in product intercomparisons are mitigated when products are averaged over at least 7 km × 7 km areas, b) VIIRS observations, with improved consistency in cross-track spatial sampling, yield more precise calibration/validation statistics than that of MODIS, and c) use of a single pixel centered on in-situ coastal stations provides an optimal sampling size for validation efforts. These findings will have implications for enhancing our understanding of uncertainties in ocean color retrievals and for planning of future ocean color missions and the associated calibration/validation exercises.

Coastal ocean color↗

SIMBIOS Data Product and Algorithm Validation with Emphasis on the Biogeochemical and Inherent Optical Properties

The purpose of our component of the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) program is to address and quantify the relative accuracy of the various ocean color remote sensing products by means of product and algorithm validation. In order to accomplish these goals, we have been collaborating in an international research program in the Gulf of California designed to examine the spatial and temporal bio-optical variability in this region. In addition, we participated in various cruises of opportunity to supplement our validation data set. Our long-term objectives are to: (1) collect optical and biochemical data in oceanic and coastal regions of interest; (2) provide collected data to the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) Bio-Optical Archive and Storage System (SeaBASS) database, the SIMBIOS project office, and other interested users; (3) maintain and update instrumentation and data archiving and dissemination systems; and (4) determine spatial and temporal error fields for the biological and geophysical data products from the various ocean color missions.

Zaneveld, J. Ronald V.↗

Estimating pixel-level uncertainty in ocean color retrievals from MODIS

The spectral distribution of marine remote sensing reflectance, R(rs), is the fundamental measurement of ocean color science, from which a host of bio-optical and biogeochemical properties of the water column can be derived. Estimation of uncertainty in these derived properties is thus dependent on knowledge of the uncertainty in satellite-retrieved R(rs) (u(c)(R(rs))) at each pixel. Uncertainty in R(rs), in turn, is dependent on the propagation of various uncertainty sources through the R(rs) retrieval process, namely the atmospheric correction (AC). A derivative-based method for uncertainty propagation is established here to calculate the pixel-level uncertainty in R(rs), as retrieved using NASA’s multiple-scattering epsilon (MSEPS) AC algorithm and verified using Monte Carlo (MC) analysis. The approach is then applied to measurements from the Moderate Resolution Imaging Spectroradiometer (MODIS) on the Aqua satellite, with uncertainty sources including instrument random noise, instrument systematic uncertainty, and forward model uncertainty. The uc(Rrs) is verified by comparison with statistical analysis of coincident retrievals from MODIS and in situ Rrs measurements, and our approach performs well in most cases. Based on analysis of an example 8-day global products, we also show that relative uncertainty in R(rs) at blue bands has a similar spatial pattern to the derived concentration of the phytoplankton pigment chlorophyll-a (chl-a), and around 7.3%, 17.0%, and 35.2% of all clear water pixels (chl-a ≤ 0.1 mg/cu.m) with valid u(c)(R(rs)) have a relative uncertainty ≤ 5% at bands 412 nm, 443 nm, and 488 nm respectively, which is a common goal of ocean color retrievals for clear waters. While the analysis shows that u(c)(R(rs)) calculated from our derivative-based method is reasonable, some issues need further investigation, including improved knowledge of forward model uncertainty and systematic uncertainty in instrument calibration.

Pixel-level uncertainty↗

Early Instrument Performance Results from the Terra/Moderate Resolution Imaging Spectroradiometer (MODIS)

The Moderate Resolution Imaging Spectroradiometer (MODIS) is a major observational capability flying on the Earth Observing System (EOS) AM-1 "Terra" mission. This mission is to go into orbit in late 1999 or very early 2000. The MODIS was developed to provide improved observations of land, ocean, and atmosphere features relative to "heritage instruments" such as the NOAA Advanced Very High Resolution Radiometer (AVHRR), the Nimbus Coastal Zone Color Scanner (CZCS)and the SeaStar/SeaWiFS instruments, in particular. In addition the MODIS should provide complementary observations to the Landsat-7 Thematic Mapper and the NOAA HIRS instrument. There has been considerable effort to include capabilities or plans to characterize and assure calibration of the instrument data. These efforts include on on-board blackbody (BB), a solar diffuser (SID), a solar diffuser stability monitor (SDSM), and a spectral radiometric calibration assembly (SDSM). These devices, along with careful analyses of scenes acquired during orbit, are expected to allow comparisons with pre-launch expectations regarding spatial performance, spectral performance, and radiometric performance. In addition deep space observations and observations of the moon are to be used to characterize instrument performance. The purpose of this paper is to provide quantitative comparisons, as results become available from the Terra MODIS, to heritage instruments, pre-launch expectations and specifications.

Salomonson, V. V.↗

Airborne Mission Concept for Coastal Ocean Color and Ecosystems Research

NASA airborne missions in 2011 and 2013 over Monterey Bay, CA, demonstrated novel above- and in-water calibration and validation measurements supporting a combined airborne sensor approach (imaging spectrometer, microradiometers, and a sun photometer). The resultant airborne data characterize contemporaneous coastal atmospheric and aquatic properties plus sea-truth observations from state-of-the-art instrument systems spanning a next-generation spectral domain (320-875 nm). This airborne instrument suite for calibration, validation, and research flew at the lowest safe altitude (ca. 100 ft or 30 m) as well as higher altitudes (e.g., 6,000 ft or 1,800 m) above the sea surface covering a larger area in a single synoptic sortie than ship-based measurements at a few stations during the same sampling period. Data collection of coincident atmospheric and aquatic properties near the sea surface and at altitude allows the input of relevant variables into atmospheric correction schemes to improve the output of corrected imaging spectrometer data. Specific channels support legacy and next-generation satellite capabilities, and flights are planned to within 30 min of satellite overpass. This concept supports calibration and validation activities of ocean color phenomena (e.g., river plumes, algal blooms) and studies of water quality and coastal ecosystems. The 2011 COAST mission flew at 100 and 6,000 ft on a Twin Otter platform with flight plans accommodating the competing requirements of the sensor suite, which included the Coastal-Airborne In-situ Radiometers (C-AIR) for the first time. C-AIR (Biospherical Instruments Inc.) also flew in the 2013 OCEANIA mission at 100 and 1,000 ft on the Twin Otter below the California airborne simulation of the proposed NASA HyspIRI satellite system comprised of an imaging spectrometer and thermal infrared multispectral imager on the ER-2 at 65,000 ft (20,000 m). For both missions, the Compact-Optical Profiling System (Biospherical Instruments, Inc.), an in-water system with microradiometers matching C-AIR, was deployed to compare sea-truth measurements and low-altitude Twin Otter flights within Monterey Bay red tide events. This novel airborne and in-water sensor capability advances the science of coastal measurements and enables rapid response for coastal events.

Oceans↗

Spinoff 2009

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Source record↗

Ocean surface radiation measurement best practices

Ocean surface radiation measurement best practices have been developed as a first step to support the interoperability of radiation measurements across multiple ocean platforms and between land and ocean networks. This document describes the consensus by a working group of radiation measurement experts from land, ocean, and aircraft communities. The scope was limited to broadband shortwave (solar) and longwave (terrestrial infrared) surface irradiance measurements for quantification of the surface radiation budget. Best practices for spectral measurements for biological purposes like photosynthetically active radiation and ocean color are only mentioned briefly to motivate future interactions between the physical surface flux and biological radiation measurement communities. Topics discussed in these best practices include instrument selection, handling of sensors and installation, data quality monitoring, data processing, and calibration. It is recognized that platform and resource limitations may prohibit incorporating all best practices into all measurements and that spatial coverage is also an important motivator for expanding current networks. Thus, one of the key recommendations is to perform interoperability experiments that can help quantify the uncertainty of different practices and lay the groundwork for a multi-tiered global network with a mix of high-accuracy reference stations and lower-cost platforms and practices that can fill in spatial gaps.

54 ENVIRONMENTAL SCIENCES↗

OSTA-1 - The Space Shuttle's first scientific payload

The capabilities of the first Space Shuttle scientific payload for remote sensing observations of the earth are evaluated, and the instruments used are from the Office of Space and Terrestrial Applications (OSTA-1). The payload gathered 10 million square kilometers of data over the earth's oceans, 6 million square kilometers of data over land masses, and global atmospheric data on carbon monoxide concentration. Shuttle imaging radar collected data over a 10,000 km sweep from Spain to Australia, a Shuttle multispectral infrared radiometer obtained 400,000 ten-channel spectra in clear weather conditions over four continents, and the Ocean Color Experiment detected water color for interpretation of major water constituents. The mission is considered to be a success based on the amount of data collected, and scientific and technical insight gained for the development of Shuttle flight instruments.

Moore, J. W.↗

Adaptation of a Hyperspectral Atmospheric Correction Algorithm for Multi-spectral Ocean Color Data in Coastal Waters

This SIMBIOS contract supports several activities over its three-year time-span. These include certain computational aspects of atmospheric correction, including the modification of our hyperspectral atmospheric correction algorithm Tafkaa for various multi-spectral instruments, such as SeaWiFS, MODIS, and GLI. Additionally, since absorbing aerosols are becoming common in many coastal areas, we are making the model calculations to incorporate various absorbing aerosol models into tables used by our Tafkaa atmospheric correction algorithm. Finally, we have developed the algorithms to use MODIS data to characterize thin cirrus effects on aerosol retrieval.

Gao, Bo-Cai↗