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All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology

The TOPAS Monte Carlo (MC) system is used in radiation therapy and medical imaging research, having played a significant role in making Monte Carlo simulations widely available for proton therapy related research. While TOPAS provides detailed simulations of patient scale properties, the fundamental unit of the biological response to radiation is a cell. Thus, our goal was to develop TOPAS-nBio, an extension of TOPAS dedicated to advance understanding of radiobiological effects at the (sub-)cellular, (i.e., the cellular and sub-cellular) scale. TOPAS-nBio was designed as a set of open source classes that extends TOPAS to model radiobiological experiments. TOPAS-nBio is based on and extends Geant4-DNA, which extends the Geant4 toolkit, the basis of TOPAS, to include very low-energy interactions of particles down to vibrational energies, explicitly simulates every particle interaction (i.e., without using condensed histories) and propagates radiolysis products. To further facilitate the use of TOPAS-nBio, a graphical user interface was developed. TOPAS-nBio offers full track-structure Monte Carlo simulations, integration of chemical reactions within the first millisecond, an extensive catalogue of specialized cell geometries as well as sub-cellular structures such as DNA and mitochondria, and interfaces to mechanistic models of DNA repair kinetics. We compared TOPAS-nBio simulations to measured and published data of energy deposition patterns and chemical reaction rates (G values). Our simulations agreed well within the experimental uncertainties. Additionally, we expanded the chemical reactions and species provided in Geant4-DNA and developed a new method based on independent reaction times (IRT), including a total of 72 reactions classified into 6 types between neutral and charged species. Chemical stage simulations using IRT were a factor of 145 faster than with step-by-step tracking. Finally, we applied the geometric/chemical modeling to obtain initial yields of double-strand breaks (DSBs) in DNA fibers for proton irradiations of 3 and 50 MeV and compared the effect of including chemical reactions on the number and complexity of DSB induction. Over half of the DSBs were found to include chemical reactions with approximately 5% of DSBs caused only by chemical reactions. In conclusion, the TOPAS-nBio extension to the TOPAS MC application offers access to accurate and detailed multiscale simulations, from a macroscopic description of the radiation field to microscopic description of biological outcome for selected cells. TOPAS-nBio offers detailed physics and chemistry simulations of radiobiological experiments on cells simulating the initially induced damage and links to models of DNA repair kinetics.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
NASA NTRS1991

Particle motion in the tail current sheet

Theory of particle motion in current sheets is reviewed. For small, approximately constant normal magnetic field, Bz, particles oscillate about the current sheet and 'live' within the sheet for one-half gyroperiod based on Bz. This lifetime replaces the mean collision time in the Lorentzian conductivity and thus gives rise to the concept of an inertial (or gyro-) conductivity. A substorm model by Coroniti utilizes this conductivity to allow reconnection to proceed without anomalous processes, due to wave-particle interactions. Chaotic particle orbits may at times be important to the dynamics, depending on parameters such as particle energy, current sheet thickness, and field line curvature. A current sheet model with neutral line predicts a ridge structure and asymmetries in the distribution function. Ion distributions near the plasma sheet boundary layer, during the CDAW 6 interval, are consistent with the model predictions. In recent studies by Mitchell et al. and Williams et al., the major current carriers during the growth phase of a substorm were found to be adiabatic electrons not more than 1 keV, but just before a current disruption event, the tail current was mainly carried by energetic ions undergoing current sheet oscillation.

Speiser, T. W.↗
DOE OSTI2021

An Indirect Search for Weakly Interacting Massive Particles in the Sun Using Upward-going Muons in NOvA

I present the first Dark Matter search results using the full data set collected with the upward-going muon trigger in NOvA. Weakly Interactive Massive Particles (WIMPs) are a theoretical non-baryonic form of Dark Matter. The nature of Dark Matter is one of the most exciting open questions in modern physics. Though its existence can be inferred by astrophysical evidence, its properties are not yet understood. If we assume that Dark Matter particles can produce Standard Model particles through their interactions, an indirect search can help shed light on this mystery.The NOvA collaboration has built a 14 kton, fine-grained, low-Z, total absorption tracking calorimeter at an off-axis angle to the NuMI neutrino beam. Even though the detector is optimized to observe electron neutrino appearance from a muon neutrino beam, it has a unique potential for more exotic searches given its excellent granularity and energy resolution and relatively low-energy neutrino thresholds. In fact, with an efficient upward-going muon trigger and sufficient background suppression offline, NOvA is capable of a competitive indirect Dark Matter search for low-mass WIMPs.The idea of the upward-going muon trigger is first to select high-quality muon tracks, then use the timing information of all of the hits of each track to estimate directionality. In this way, the background flux is suppressed by more than a factor of 10^5 at trigger level to a rate of approximately 1 Hz. To further optimize this search, we use only upward-going muons that point to the Sun, so our search occurs at night when the Sun is on the other side of the Earth. This strategy also allows us to use the time when the Sun is above the horizon as a control region to estimate the background. Ultimately, implementation of a cut based and maximum likelihood analysis provides a powerful tool for rejecting background and selecting a sample of neutrino-induced upward-going muons. The overall background rejection power achieved by the analysis is substantial and impressive. Starting with approximately 150,000 events per second, we reduced it to 40 events per year. Since no statistically significant excess was found, a 90\% C.L. upper limit on the expected muon flux of upward-going muons has been set using the upper limit on the number of events given the number of observed events in the signal region. Lastly, by assuming the theory behind the upward-going muon flux, a limit on the WIMP-nucleon spin-dependent cross-section in the Sun was estimated. Although the limits on the spin-dependent cross-section do not appear to be competitive with previous indirect Dark Matter searches, the upward-going muon flux limits are promising. The upward-going muon flux limits could extend these results to a broader class of models that are not specific to the dark matter theory but produce upward-going muons, leading to competitive results.

Principato, Cristiana↗
NASA NTRSDate not supplied

A Dynamic Testing Approach for Particulate Erosion–Corrosion for Gas Turbine Coatings

Particle interactions in gas turbine engines can be multicomponent, complex phenomena leading to the degradation of thermal (TBCs) and environmental barrier coatings (EBCs) meant to protect engine components. Ingestion of particles into the engine can lead to recession of coatings due to particle erosion. Similarly, these same particles can become molten, adhere to coatings and result in thermochemical corrosion of coating materials. Particle erosion testing is often carried out where the particles are injected into a gas stream, accelerated within a nozzle, and impinge on sample. Conversely, most molten particle corrosion testing is often done in static laboratory furnaces, which does not capture the dynamic nature of deposition in application. Nevertheless, these damage mechanisms are often tested separately and no single standard exists to test both erosive and corrosive particle interactions with coating materials under relevant operating conditions for gas turbine engines. Understanding the synergies of particle interactions in engines is crucial in determining operating lifetimes of potential coating materials. Such considerations emphasize the need for realistic approaches in standardizing particle interaction testing in combustion environments. The current study outlines initial efforts at NASA Glenn’s Erosion Burner Rig Facility in improving dynamic erosion/corrosion testing methods by assessing the durability of state-of-the-art (SOA) TBC material 7 wt.% yttria stabilized zirconia (7YSZ) as a function of particle deposition rate, burner temperature, and particle size. Calibration data to determine particle deposition rate will be presented, and mass and optical profilometry measurements were utilized to estimate mass/volume loss versus deposition per increment of particulate used over time. Electron microscopy analyses were then carried out to assess coating damage after testing.

TBC↗
NASA NTRSDate not supplied

A Dynamic Testing Approach for Particulate Erosion–Corrosion for Gas Turbine Coatings

Particle interactions in gas turbine engines can be multicomponent, complex phenomena leading to the degradation of thermal (TBCs) and environmental barrier coatings (EBCs) meant to protect engine components. Ingestion of particles into the engine can lead to recession of coatings due to particle erosion. Similarly, these same particles can become molten, adhere to coatings and result in thermochemical corrosion of coating materials. Particle erosion testing is often carried out where the particles are injected into a gas stream, accelerated within a nozzle, and impinge on sample. Conversely, most molten particle corrosion testing is often done in static laboratory furnaces, which does not capture the dynamic nature of deposition in application. Nevertheless, these damage mechanisms are often tested separately and no single standard exists to test both erosive and corrosive particle interactions with coating materials under relevant operating conditions for gas turbine engines. Understanding the synergies of particle interactions in engines is crucial in determining operating lifetimes of potential coating materials. Such considerations emphasize the need for realistic approaches in standardizing particle interaction testing in combustion environments. The current study outlines initial efforts at NASA Glenn’s Erosion Burner Rig Facility in improving dynamic erosion/corrosion testing methods by assessing the durability of state-of-the-art (SOA) TBC material 7 wt.% yttria stabilized zirconia (7YSZ) as a function of particle deposition rate, burner temperature, and particle size. Calibration data to determine particle deposition rate will be presented, and mass and optical profilometry measurements were utilized to estimate mass/volume loss versus deposition per increment of particulate used over time. Electron microscopy analyses were then carried out to assess coating damage after testing.

TBC↗
NASA NTRSDate not supplied

A Dynamic Testing Approach for Particulate Erosion–Corrosion for Gas Turbine Coatings

Particle interactions in gas turbine engines can be multicomponent, complex phenomena leading to the degradation of thermal (TBCs) and environmental barrier coatings (EBCs) meant to protect engine components. Ingestion of particles into the engine can lead to recession of coatings due to particle erosion. Similarly, these same particles can become molten, adhere to coatings and result in thermochemical corrosion of coating materials. Particle erosion testing is often carried out where the particles are injected into a gas stream, accelerated within a nozzle, and impinge on sample. Conversely, most molten particle corrosion testing is often done in static laboratory furnaces, which does not capture the dynamic nature of deposition in application. Nevertheless, these damage mechanisms are often tested separately and no single standard exists to test both erosive and corrosive particle interactions with coating materials under relevant operating conditions for gas turbine engines. Understanding the synergies of particle interactions in engines is crucial in determining operating lifetimes of potential coating materials. Such considerations emphasize the need for realistic approaches in standardizing particle interaction testing in combustion environments. The current study outlines initial efforts at NASA Glenn’s Erosion Burner Rig Facility in improving dynamic erosion/corrosion testing methods by assessing the durability of state-of-the-art (SOA) TBC material 7 wt.% yttria stabilized zirconia (7YSZ) as a function of particle deposition rate, burner temperature, and particle size. Calibration data to determine particle deposition rate will be presented, and mass and optical profilometry measurements were utilized to estimate mass/volume loss versus deposition per increment of particulate used over time. Electron microscopy analyses were then carried out to assess coating damage after testing.

burner rig↗
DOE OSTI2018

Investigation and quantification of flow unsteadiness in shock-particle cloud interaction

This work aims to study the interaction of a shock wave with a cloud of particles to quantify flow unsteadiness and velocity fluctuations using particle-resolved direct numerical simulation (PR-DNS). Three cases are studied, with each case revealing one aspect of the intricate flow phenomena involved in this interaction. The unsteady interaction of a shock wave with a transverse array of particles reveals the origin of unsteadiness under the effect of mutual wave-wave and wave-wake interactions between the particles. In the second case, the interaction of a shock with a particle cloud is studied, with a focus on the interaction of the complex wave system with the vortical structure. A budget analysis of the vorticity equation reveals the sources of strong unsteadiness in the particle cloud. A detailed analysis of the velocity fluctuation and kinetic energy in the fluctuating motion is performed to ascertain the importance of the velocity fluctuations that arise from the strong unsteadiness. Here, an analogous analysis is presented, in the third case, for a gradually-induced flow on the same particle cloud along with a comparison to the shock induced case to assess the impulsive effect of shock on intensity of the fluctuating field statistics.

42 ENGINEERING↗
NASA NTRS2004

Interactive Terascale Particle Visualization

This paper describes the methods used to produce an interactive visualization of a 2 TB computational fluid dynamics (CFD) data set using particle tracing (streaklines). We use the method introduced by Bruckschen et al. [2001] that pre-computes a large number of particles, stores them on disk using a space-filling curve ordering that minimizes seeks, and then retrieves and displays the particles according to the user's command. We describe how the particle computation can be performed using a PC cluster, how the algorithm can be adapted to work with a multi-block curvilinear mesh, and how the out-of-core visualization can be scaled to 296 billion particles while still achieving interactive performance on PG hardware. Compared to the earlier work, our data set size and total number of particles are an order of magnitude larger. We also describe a new compression technique that allows the lossless compression of the particles by 41% and speeds the particle retrieval by about 30%.

Ellsworth, David↗
NASA NTRS1971

Wave-wave interactions due to scattering by electrons.

The kinetic wave equation which describes the nonlinear wave-particle interaction in a plasma is considered, and a method which uses the picture of quantized plasmons interacting with particles for the description of nonlinear wave-particle interactions is briefly described. In this method an assumption is made of the Markoffian character of the equation. It is shown that the Markoffian assumption can be justified at least for the case when the plasma is close to a stable stationary state. The diagram method developed by Nishikawa (1966) is used to derive an explicit expression for the kinetic equation. The application of the result to the case of interaction between an electron-wave and an ion-wave is discussed.

Nishikawa, K.↗
DOE OSTI2019

Laying the Foundation for a Predictive Theory of Electroweak Nuclear Phenomena

Reliable model-independent predictions of nuclear processes such as beta-decay and neutrinonucleus scattering are important for many fundamental science and mission-related investigations; For example, accurate descriptions of as beta-decay are required for modeling the anti-neutrino spectrum of nuclear reactor, whether for trying to detect new physics such as sterile neutrinos, or remotely identifying the purpose of that reactor. For these activities, we need accurate calculations, as well as careful and thorough analyses of theoretical error and uncertainty in the underlying models and the many-body methods and codes used in solving that model. Unfortunately, modern theoretical calculations of these processes are inadequate for this task. At the heart of this inadequacy is the interaction between nucleons and other particles known as nuclear currents. Historically, descriptions of nuclear currents took into account only the simplest of particle interactions. Recently, the development of an effective field theory known as chiral EFT has been used to derive large corrections to these particle interactions. However, the complex nature of these corrections inhibited their use in ab initio methods of predicting nuclear processes. We developed a novel method to address these complexities and applied it in a series of benchmark and demonstrative calculations using state-of-the-art quantum few-nucleon solvers. Specifically, we studied the role of two-nucleon currents in electroweak processes using light nuclei (i.e., nuclei containing fewer than five nucleons) as a workbench to compute these processes and quantify their uncertainties using Bayesian extensions of the EFT.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2017

The plasma depletion layer beyond the heliopause: evidence, implications, and predictions for Voyager 2 and new horizons

A plasma depletion layer (PDL) is predicted beyond the heliopause, analogous to the PDLs observed sunwards of planetary magnetopauses: draping of interstellar medium (ISM) magnetic field lines over the heliopause should increase the magnetic field strength and, perpendicular ion temperature, cause density depletions by allowing plasma ions (and electrons) with large parallel temperatures to escape along B, and increase the temperature anisotropy until limited by wave instabilities. Published Voyager 1 magnetometer and plasma wave data provide strong evidence for the coupled magnetic amplification (≈30%) and density depletion (≈50%) expected for a weak PDL. The predicted reduction in parallel temperature is ≈50%. The locations on the sky of the PDL and the points on the heliopause of maximum magnetic draping and total pressure are predicted using the ISM magnetic field direction obtained from the Interstellar Boundary Explorer (IBEX) ribbon. The IBEX ribbon overlies the former, as expected, while the latter lies within the ridge of maximum, non-ribbon, globally distributed flux. The PDL should be strongest along the ISM field line passing through these points and the Sun–ISM velocity vector. Based on their trajectories, Voyager 2 and New Horizons should observe a much stronger PDL (stronger magnetic amplification, density depletion, and changes in temperature) than Voyager 1. Finally, the reduced cosmic ray fluxes observed near 90° pitchangle by Voyager 1 beyond the heliopause appear qualitatively consistent with wave–particle interactions transferring perpendicular particle energy to parallel energy where the PDL is strong, followed by magnetic focusing as particles propagate into weaker magnetic field regions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Hierarchical Assembly of Plasmonic Nanoparticle Heterodimer Arrays with Tunable Sub-5 nm Nanogaps

Nanoparticle assemblies have generated intense interest because of their novel optical, electronic, and magnetic properties that open up numerous opportunities in fundamental and applied nanophotonics, -electronics, and -magnetics. However, despite the great scientific and technological potential of these structures, it remains an outstanding challenge to reliably fabricate such assemblies with both nanometer-level structural control and precise spatial arrangements on a macroscopic scale. It is the combination of these two features that is key to realizing nanoparticle assemblies potential, particular for device applications. To address this challenge, we propose a hierarchical assembly approach consisting of both template-particle and particle-particle interactions, whereby the former ensures precise addressability of assemblies on a surface and the latter provides nanometer-level structural control. Template-particle interactions are harnessed via chemical-pattern-directed assembly, and the particle-particle interactions are controlled using DNA-directed self-assembly. To demonstrate the potential of this hierarchical assembly approach, we demonstrate the fabrication of a particularly fascinating assembly: the nanoparticle heterodimer, which possesses a surprisingly rich set of plasmonic properties and is a promising candidate to enable a variety of imaging and sensing applications. Each heterodimer is placed on the surface at predetermined locations, and the precise control of the nanogaps is confirmed by far-field scattering measurements of individual dimers. We further demonstrate that the gap size can be effectively tuned by varying the DNA length. By correlating measured spectra with finite-difference time-domain (FDTD) simulations, we determine the gap sizes to be 4.2 and 5.0 nm-with subnm deviation-for the two DNA lengths investigated. This is one of the best gap uniformities ever demonstrated for surface-bound nanoparticle assemblies. The estimated surface-enhanced Raman scattering (SERS) enhancement factor of these heterodimers is on the order of 10 5 -10 6 with high reproducibility and predictable polarization-dependence. This hierarchical fabrication technique-employing both template-particle and particle-particle interactions-constitutes a novel platform for the realization of functional nanoparticle assemblies on surfaces and thereby creates new opportunities to implement these structures in a variety of applications.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
NASA NTRSDate not supplied

Implementation of Charged Particle Behavior in Discrete Element Method (DEM) Simulations

To understand the behavior of charged lunar regolith when perturbed by lunar landers, it is important to couple the grain dynamics with mechanical and electrical particle interactions. To accomplish this, improvements have been made to a discrete element method (DEM) software package to include both short- and long-range interactions between spherical particles. Short-range interactions rely on contact between the particles, such as electrical conduction and triboelectric charge transfer driven by work functions. Long-range interactions act at a distance between every pairing of particles, such as electrostatic forces and gravitational forces. Results from simulations between a few particles are compared with theory to verify these added behaviors prior to scaling up to more complex scenarios. The radii, initial charges, electrical conductivities, work functions, and separation of the particles are varied and the resultant charges as well as the time required to reach the final state are determined.

Electrostatics↗
DOE OSTI2022

Fast Particle-Wave Interactions and Alfvén Eigenmodes in JET Tokamak Plasmas

This document serves as the closeout report of DOE Grant Award No. DE-FG02-99ER54563 with project period 1 April 2015 through 31 March 2020. The project comprised the international collaboration between MIT and EU scientists on the JET facility to improve our understanding of the physics of energetic particle-wave interactions by measuring the damping rates of stable Alfvén Eigenmodes (AEs) and unstable energetic particle driven modes. More specifically, this project involved the continued participation of MIT, the Culham Centre for Fusion Energy, the Swiss Plasma Center, and theorists from various European laboratories and from UC Irvine. Past contributions from the University of São Paulo are gratefully acknowledged. The Alfvén Eigenmode Active Diagnostic (AEAD) on JET discharges was successfully upgraded in this period and has extracted physically useful information, in primarily deuterium plasma discharges. It is expected that such experiments would be continued during the DT campaign in CY 2021 to assess the damping rates of similar modes in the presence of alpha particles, a product of fusing burning plasma. Only JET would carry out such experiments in the near term in the world. It is important to note that this collaboration was continued under DOE Grant Award No. DE-SC0014264 from 1 April 2020 through the present. In this grant period, the AEAD was upgraded with a set of individual amplifiers for each of a set of six antennas in two toroidally opposite locations. These new amplifiers allowed targeted selection of the antennas’ toroidal spectrum for AEs of interest with toroidal mode number | n | ≤ 20. The resonant detection and measurement of the damping rates of AEs was obtained from magnetic probes that could be compared with theory and simulations. This is a key topic of investigation for ITER and all other next-step fusion experiments, where such modes will interact with energetic particles produced by fusion reactions (alpha particles), Neutral Beam Injection (NBI) and Ion Cyclotron Resonance Heating (ICRH). The majority of the observations during this period were of Toroidal Alfvén Eigenmodes (TAEs) as these are most commonly observed on JET; a number of measurements were made during dedicated TAE experiments. However, a new set of lower frequency band filters were procured with the goal of studying Geodesic Acoustic Modes (GAMs), Beta (Acoustic) AEs (BAE/BAAEs), and Reverse Shear AEs (RSAEs), also predicted by theory. Commissioning and optimizations were successfully completed in this period, and the diagnostic has been in operation during the more recent JET campaigns. Initial results have been obtained in dedicated TAE experiments and successfully compared to drift-kinetic theory. A wide range of theoretical studies have been undertaken in support of the upcoming JET campaigns experiments. To supplement the ongoing use of ideal MHD codes, such as MISHKA during the studies of TAEs, gyrokinetic simulations of low frequency AEs were performed in collaboration with UC Irvine. The Gyrokinetic Toroidal Code (GTC) was used to determine the structure, frequencies and stability of AEs in JET plasmas. Thus, a solid scientific foundation has been laid for future DT campaigns in JET in the 2021 operation period when the damping rates of relevant modes in the presence of alpha particles could be assessed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Interactions of particles with “continuous spin” fields

Powerful general arguments allow only a few families of long-range interactions, exemplified by gauge field theories of electromagnetism and gravity. However, all of these arguments presuppose that massless fields have zero spin scale (Casimir invariant) and hence exactly boost invariant helicity. This misses the most general behavior compatible with Lorentz symmetry. We present a Lagrangian formalism describing interactions of matter particles with bosonic “continuous spin” fields with arbitrary spin scale ρ. Remarkably, physical observables are well approximated by familiar theories at frequencies larger than ρ, with calculable deviations at low frequencies and long distances. For example, we predict specific ρ-dependent modifications to the Lorentz force law and the Larmor formula, which lay the foundation for experimental tests of the photon’s spin scale. We also reproduce known soft radiation emission amplitudes for nonzero ρ. The particles’ effective matter currents are not fully localized to their worldlines when ρ ≠ 0, which motivates investigation of manifestly local completions of our theory. Our results also motivate the development of continuous spin analogues of gravity and non-Abelian gauge theories. Given the correspondence with familiar gauge theory in the small ρ limit, we conjecture that continuous spin particles may in fact mediate known long-range forces, with testable consequences.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS1991

Interrelation of soft and hard X-ray emissions during solar flares. II - Simulation model

Two-dimensional electrostatic particle simulations are presented which incorporate the effect of quasi-static electric fields on particle dynamics as well as effects associated with wave-particle interactions induced by the accelerated particles. The properties of the soft and hard X-ray and microwave emissions from such systems are examined. In particular, it is shown that acceleration by quasi-static electric fields and heating via wave-particle interactions produces electron distributions with a broken-power law, similar to those inferred from hard X-ray spectra. Also, heating of the ambient plasma gives rise to a region of hot plasma propagating down to the chromosphere at about the ion sound speed.

Winglee, R. M.↗